Wall clock time and date at job start Tue Mar 31 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.99052 * 2 1 4 4 O 1.43743 * 109.88138 * 238.91918 * 2 1 3 5 5 C 1.44388 * 106.97189 * 214.05938 * 4 2 1 6 6 C 1.54993 * 103.49084 * 40.06239 * 5 4 2 7 7 C 1.54099 * 109.88048 * 121.07991 * 2 1 3 8 8 H 1.08998 * 110.60800 * 240.18799 * 7 2 1 9 9 C 1.50697 * 110.48690 * 2.78719 * 7 2 1 10 10 O 1.21284 * 120.00355 * 84.29013 * 9 7 2 11 11 N 1.34782 * 119.99956 * 264.28849 * 9 7 2 12 12 N 1.40092 * 120.00088 * 179.97438 * 11 9 7 13 13 C 1.34783 * 120.00050 * 180.02562 * 12 11 9 14 14 O 1.21582 * 120.00432 * 180.02562 * 13 12 11 15 15 N 1.34776 * 119.99747 * 359.97438 * 13 12 11 16 16 C 1.46503 * 120.00223 * 179.72635 * 15 13 12 17 17 H 1.09000 * 109.46518 * 325.28254 * 16 15 13 18 18 C 1.50699 * 109.47384 * 205.27512 * 16 15 13 19 19 H 1.07994 * 119.99998 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99782 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00105 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99800 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47135 * 90.00411 * 22 20 18 24 24 H 1.48501 * 109.47248 * 209.99913 * 22 20 18 25 25 H 1.48504 * 109.47318 * 330.00048 * 22 20 18 26 26 C 1.53003 * 109.46703 * 85.27430 * 16 15 13 27 27 F 1.39892 * 109.47266 * 60.00725 * 26 16 15 28 28 F 1.39905 * 109.46601 * 180.02562 * 26 16 15 29 29 F 1.39898 * 109.47400 * 299.99963 * 26 16 15 30 30 H 1.08993 * 109.47479 * 295.47614 * 1 2 3 31 31 H 1.08996 * 109.47229 * 55.48346 * 1 2 3 32 32 H 1.09006 * 109.46622 * 175.47902 * 1 2 3 33 33 H 1.08998 * 110.61435 * 281.55656 * 5 4 2 34 34 H 1.09007 * 110.61421 * 158.56177 * 5 4 2 35 35 H 1.09005 * 110.90447 * 204.77701 * 6 5 4 36 36 H 1.08995 * 110.93958 * 81.18521 * 6 5 4 37 37 H 0.97006 * 119.99540 * 0.02562 * 11 9 7 38 38 H 0.96996 * 120.00765 * 0.02562 * 12 11 9 39 39 H 0.97000 * 119.99759 * 359.97438 * 15 13 12 40 40 H 0.97009 * 120.00242 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1577 5 6 3.2381 -1.3640 -0.7646 6 6 2.9196 -1.8914 0.6576 7 6 2.0540 -0.7481 1.2411 8 1 2.6615 -0.0872 1.8594 9 6 0.9074 -1.3105 2.0411 10 8 0.4261 -2.3823 1.7403 11 7 0.4168 -0.6223 3.0910 12 7 -0.6495 -1.1448 3.8344 13 6 -1.1405 -0.4564 4.8840 14 8 -2.0656 -0.9100 5.5296 15 7 -0.6053 0.7344 5.2187 16 6 -1.1428 1.4855 6.3559 17 1 -2.2199 1.3299 6.4175 18 6 -0.8571 2.9533 6.1687 19 1 -0.3284 3.2927 5.2903 20 6 -1.2716 3.8629 7.1183 21 7 -1.9159 3.4495 8.1877 22 14 -0.9168 5.6822 6.8866 23 1 -2.0396 6.3155 6.1493 24 1 -0.7683 6.3306 8.2143 25 1 0.3395 5.8468 6.1120 26 6 -0.4824 0.9980 7.6470 27 9 0.8999 1.1976 7.5680 28 9 -0.9962 1.7149 8.7330 29 9 -0.7477 -0.3646 7.8208 30 1 -0.3634 0.4420 0.9277 31 1 -0.3633 0.5823 -0.8467 32 1 -0.3633 -1.0246 -0.0810 33 1 4.0685 -0.6586 -0.7355 34 1 3.4587 -2.1906 -1.4401 35 1 3.8333 -2.0223 1.2375 36 1 2.3543 -2.8221 0.6104 37 1 0.8015 0.2351 3.3314 38 1 -1.0345 -2.0020 3.5939 39 1 0.1335 1.0958 4.7044 40 1 -2.2072 4.0894 8.8560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209329613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:29 Heat of formation + Delta-G solvation = -229.242817 kcal Electronic energy + Delta-G solvation = -31147.214314 eV Core-core repulsion = 26162.673979 eV Total energy + Delta-G solvation = -4984.540335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.39799 -48.03271 -47.70738 -42.00952 -41.00012 -39.42646 -36.85548 -36.62757 -34.41186 -33.88279 -32.46253 -31.78641 -30.01671 -27.31558 -26.58532 -24.10233 -23.85903 -23.12330 -22.04260 -21.47838 -20.33723 -19.10320 -18.91476 -18.68638 -18.62402 -17.92245 -17.56136 -17.08259 -16.84913 -16.64446 -16.49336 -16.28333 -15.96607 -15.69832 -15.17366 -14.97883 -14.92711 -14.55498 -14.43779 -14.27059 -14.01652 -13.92394 -13.87020 -13.43870 -13.36198 -13.12380 -13.08833 -12.82923 -12.59994 -12.52583 -12.22123 -12.16696 -11.99649 -11.89425 -11.71187 -11.59889 -11.20282 -10.67137 -10.59567 -10.28940 -9.43338 -8.19269 -6.50587 0.72320 1.28038 1.51078 1.51989 1.62943 1.88391 1.96786 2.40038 2.55556 2.86730 2.97115 3.13448 3.45181 3.68654 3.78275 3.85020 3.94604 4.08830 4.19563 4.22642 4.30493 4.35260 4.56162 4.61219 4.80824 4.86945 4.93117 4.97277 5.16007 5.18996 5.25704 5.28972 5.40465 5.65258 5.72753 5.94246 6.21857 6.53216 6.64309 7.15683 7.22670 7.37701 8.73419 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.003335 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.673119 B = 8394.835717 C = 9367.051914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.113 0.887 4 O -0.396 6.396 5 C 0.046 3.954 6 C -0.142 4.142 7 C -0.130 4.130 8 H 0.150 0.850 9 C 0.531 3.469 10 O -0.566 6.566 11 N -0.515 5.515 12 N -0.530 5.530 13 C 0.708 3.292 14 O -0.607 6.607 15 N -0.711 5.711 16 C 0.269 3.731 17 H 0.051 0.949 18 C -0.559 4.559 19 H 0.100 0.900 20 C 0.016 3.984 21 N -0.875 5.875 22 Si 0.983 3.017 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.253 1.253 26 C 0.411 3.589 27 F -0.201 7.201 28 F -0.150 7.150 29 F -0.220 7.220 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.434 0.566 38 H 0.439 0.561 39 H 0.408 0.592 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.944 -2.404 -14.904 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.130 0.870 4 O -0.316 6.316 5 C -0.030 4.030 6 C -0.180 4.180 7 C -0.153 4.153 8 H 0.168 0.832 9 C 0.319 3.681 10 O -0.443 6.443 11 N -0.268 5.268 12 N -0.285 5.285 13 C 0.407 3.593 14 O -0.483 6.483 15 N -0.367 5.367 16 C 0.161 3.839 17 H 0.069 0.931 18 C -0.596 4.596 19 H 0.118 0.882 20 C -0.190 4.190 21 N -0.509 5.509 22 Si 0.807 3.193 23 H -0.198 1.198 24 H -0.215 1.215 25 H -0.177 1.177 26 C 0.355 3.645 27 F -0.183 7.183 28 F -0.132 7.132 29 F -0.202 7.202 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.278 0.722 38 H 0.285 0.715 39 H 0.245 0.755 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.769 -3.297 -14.547 19.000 hybrid contribution 0.113 0.514 0.739 0.907 sum 11.881 -2.784 -13.808 18.427 Atomic orbital electron populations 1.22152 0.94812 1.02354 1.03307 1.22761 0.94536 0.96641 0.82794 0.86955 1.88907 1.41156 1.68216 1.33310 1.23766 0.87326 0.97252 0.94608 1.23210 1.00363 0.97333 0.97089 1.22944 0.94396 1.00537 0.97428 0.83183 1.21045 0.84369 0.84348 0.78344 1.90728 1.61470 1.23340 1.68765 1.45152 1.28917 1.23930 1.28793 1.44378 1.31302 1.24135 1.28705 1.15894 0.82076 0.81335 0.79952 1.91005 1.32616 1.70401 1.54274 1.44936 1.38715 1.19127 1.33904 1.19305 0.94401 0.92218 0.77956 0.93119 1.21213 1.41119 0.87749 1.09512 0.88221 1.25984 0.94192 1.04867 0.93908 1.70533 1.35001 1.35794 1.09527 0.85156 0.79343 0.77290 0.77526 1.19829 1.21500 1.17652 1.23359 0.76721 0.73264 0.91176 1.92985 1.33524 1.94880 1.96884 1.93384 1.85882 1.75885 1.58003 1.93071 1.93851 1.36682 1.96609 0.90730 0.90807 0.93572 0.89151 0.88007 0.86856 0.91134 0.72169 0.71538 0.75480 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.41 71.98 0.61 -2.58 16 2 C 0.09 1.33 4.05 30.97 0.13 1.46 16 3 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 4 O -0.40 -7.29 11.19 -148.98 -1.67 -8.95 16 5 C 0.05 0.53 7.72 72.66 0.56 1.09 16 6 C -0.14 -1.80 6.65 31.90 0.21 -1.59 16 7 C -0.13 -1.70 3.43 -10.55 -0.04 -1.73 16 8 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 9 C 0.53 11.11 4.87 87.66 0.43 11.54 16 10 O -0.57 -16.40 14.82 -3.04 -0.05 -16.44 16 11 N -0.51 -10.80 5.83 -173.53 -1.01 -11.82 16 12 N -0.53 -15.56 6.26 -184.74 -1.16 -16.72 16 13 C 0.71 26.84 8.22 179.05 1.47 28.31 16 14 O -0.61 -28.80 15.76 -3.97 -0.06 -28.86 16 15 N -0.71 -26.00 4.95 -461.40 -2.28 -28.28 16 16 C 0.27 12.60 2.21 44.25 0.10 12.69 16 17 H 0.05 2.78 7.57 -2.39 -0.02 2.76 16 18 C -0.56 -25.87 8.46 25.60 0.22 -25.65 16 19 H 0.10 4.06 7.74 -2.91 -0.02 4.04 16 20 C 0.02 0.78 5.20 84.65 0.44 1.22 16 21 N -0.87 -46.44 9.50 21.45 0.20 -46.24 16 22 Si 0.98 37.82 29.54 68.60 2.03 39.85 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.29 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 26 C 0.41 20.28 2.81 71.98 0.20 20.48 16 27 F -0.20 -9.14 16.94 44.97 0.76 -8.38 16 28 F -0.15 -8.17 12.91 44.97 0.58 -7.58 16 29 F -0.22 -11.04 15.69 44.97 0.71 -10.33 16 30 H 0.07 1.35 7.09 -2.39 -0.02 1.33 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.13 7.06 -2.38 -0.02 1.11 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 1.33 6.93 -2.39 -0.02 1.31 16 37 H 0.43 6.70 6.70 -213.32 -1.43 5.27 16 38 H 0.44 13.25 8.10 -213.33 -1.73 11.52 16 39 H 0.41 11.50 6.46 -92.71 -0.60 10.90 16 40 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 Total: -1.00 -70.25 341.56 -0.24 -70.49 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -2.61 Total: 28.04 kcal Atomic # 6 Polarization: 40.92 SS G_CDS: 4.32 Total: 45.24 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -4.25 Total: -103.06 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -1.77 Total: -54.26 kcal Atomic # 9 Polarization: -28.35 SS G_CDS: 2.05 Total: -26.30 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -70.25 -0.24 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.750 kcal (2) G-P(sol) polarization free energy of solvation -70.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds