Wall clock time and date at job start Tue Mar 31 2020 23:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99552 * 2 1 4 4 O 1.43747 * 109.87948 * 238.91836 * 2 1 3 5 5 C 1.44369 * 106.98063 * 214.06066 * 4 2 1 6 6 C 1.55002 * 103.49174 * 40.05858 * 5 4 2 7 7 C 1.54104 * 109.88362 * 121.08791 * 2 1 3 8 8 H 1.09000 * 110.60197 * 240.18576 * 7 2 1 9 9 C 1.50700 * 110.48176 * 2.77780 * 7 2 1 10 10 O 1.21283 * 120.00178 * 84.29966 * 9 7 2 11 11 N 1.34776 * 120.00008 * 264.28894 * 9 7 2 12 12 N 1.40093 * 120.00244 * 180.02562 * 11 9 7 13 13 C 1.34778 * 120.00038 * 180.02562 * 12 11 9 14 14 O 1.21594 * 120.00187 * 179.97438 * 13 12 11 15 15 N 1.34773 * 120.00408 * 359.97438 * 13 12 11 16 16 C 1.46500 * 120.00632 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.46544 * 35.00071 * 16 15 13 18 18 C 1.50695 * 109.47208 * 155.00250 * 16 15 13 19 19 H 1.08006 * 120.00108 * 0.02562 * 18 16 15 20 20 C 1.37880 * 120.00128 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99643 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00016 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47052 * 269.99075 * 22 20 18 24 24 H 1.48501 * 109.47419 * 29.99689 * 22 20 18 25 25 H 1.48509 * 109.47047 * 149.99685 * 22 20 18 26 26 C 1.52996 * 109.47207 * 275.00494 * 16 15 13 27 27 F 1.39898 * 109.47037 * 299.99620 * 26 16 15 28 28 F 1.39900 * 109.47304 * 59.99701 * 26 16 15 29 29 F 1.39906 * 109.47074 * 179.97438 * 26 16 15 30 30 H 1.09010 * 109.47150 * 295.47447 * 1 2 3 31 31 H 1.08993 * 109.47901 * 55.47462 * 1 2 3 32 32 H 1.09007 * 109.47129 * 175.47883 * 1 2 3 33 33 H 1.09003 * 110.62220 * 281.56414 * 5 4 2 34 34 H 1.08995 * 110.62136 * 158.55831 * 5 4 2 35 35 H 1.09000 * 110.90958 * 204.77984 * 6 5 4 36 36 H 1.09002 * 110.93450 * 81.18508 * 6 5 4 37 37 H 0.97005 * 119.99708 * 0.02562 * 11 9 7 38 38 H 0.96999 * 120.00530 * 0.02562 * 12 11 9 39 39 H 0.97006 * 119.99508 * 0.02562 * 15 13 12 40 40 H 0.97004 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 3.2378 -1.3641 -0.7650 6 6 2.9196 -1.8915 0.6574 7 6 2.0541 -0.7483 1.2410 8 1 2.6615 -0.0873 1.8593 9 6 0.9074 -1.3106 2.0411 10 8 0.4261 -2.3824 1.7402 11 7 0.4169 -0.6225 3.0910 12 7 -0.6487 -1.1454 3.8351 13 6 -1.1395 -0.4570 4.8847 14 8 -2.0647 -0.9106 5.5303 15 7 -0.6049 0.7342 5.2189 16 6 -1.1387 1.4827 6.3595 17 1 -1.4517 0.7858 7.1369 18 6 -0.0717 2.3969 6.9041 19 1 0.9062 2.4186 6.4462 20 6 -0.3438 3.2058 7.9871 21 7 -1.5348 3.1798 8.5444 22 14 0.9786 4.3395 8.6617 23 1 1.7570 3.6258 9.7057 24 1 1.8870 4.7505 7.5612 25 1 0.3430 5.5436 9.2548 26 6 -2.3403 2.3144 5.9063 27 9 -1.9386 3.2089 4.9085 28 9 -3.3309 1.4657 5.4007 29 9 -2.8504 3.0288 6.9957 30 1 -0.3634 0.4420 0.9278 31 1 -0.3634 0.5824 -0.8466 32 1 -0.3634 -1.0245 -0.0810 33 1 4.0684 -0.6588 -0.7357 34 1 3.4583 -2.1907 -1.4403 35 1 3.8333 -2.0225 1.2372 36 1 2.3541 -2.8222 0.6102 37 1 0.8017 0.2349 3.3315 38 1 -1.0334 -2.0028 3.5949 39 1 0.1330 1.0963 4.7037 40 1 -1.7264 3.7491 9.3060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209329618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:32 Heat of formation + Delta-G solvation = -205.075934 kcal Electronic energy + Delta-G solvation = -31206.659325 eV Core-core repulsion = 26223.166945 eV Total energy + Delta-G solvation = -4983.492380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.42445 -46.07842 -45.68793 -41.06330 -39.70371 -38.46263 -35.60950 -34.88462 -33.08476 -32.61966 -31.81322 -30.61869 -28.28620 -26.60338 -24.67892 -23.10928 -22.52211 -22.27805 -20.54394 -20.30718 -19.03472 -17.96437 -17.15885 -17.02060 -16.79848 -16.72029 -16.40735 -16.02983 -15.63981 -15.38717 -15.27290 -14.97508 -14.58412 -14.43231 -14.08235 -13.40582 -13.21250 -12.99476 -12.65213 -12.64043 -12.59819 -12.47827 -12.47204 -12.36552 -12.07329 -11.90228 -11.66461 -11.37354 -11.34554 -11.28805 -11.19589 -10.93336 -10.89124 -10.57215 -10.40527 -10.01383 -9.83128 -9.79693 -8.84608 -8.59530 -8.18404 -6.33379 -4.58687 1.84719 2.21618 3.11574 3.17342 3.20561 3.34830 3.46867 3.49191 3.94585 4.10394 4.13274 4.38832 4.48375 4.65188 4.75643 4.84097 4.85918 5.00891 5.08648 5.15085 5.27951 5.37679 5.52802 5.69788 5.72123 5.76530 5.77650 6.00221 6.09315 6.39491 6.49227 6.54963 6.88540 7.06142 7.32741 7.37415 7.52169 7.81828 8.34872 8.46314 8.83410 9.09847 10.58184 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.003296 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.150651 B = 8492.079706 C = 9167.548285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.083 0.917 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.136 4.136 8 H 0.109 0.891 9 C 0.529 3.471 10 O -0.532 6.532 11 N -0.524 5.524 12 N -0.539 5.539 13 C 0.707 3.293 14 O -0.561 6.561 15 N -0.722 5.722 16 C 0.261 3.739 17 H 0.089 0.911 18 C -0.555 4.555 19 H 0.077 0.923 20 C 0.066 3.934 21 N -0.837 5.837 22 Si 0.917 3.083 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.282 1.282 26 C 0.416 3.584 27 F -0.210 7.210 28 F -0.216 7.216 29 F -0.136 7.136 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.422 0.578 38 H 0.438 0.562 39 H 0.389 0.611 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.230 -3.983 -13.483 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.101 0.899 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.159 4.159 8 H 0.128 0.872 9 C 0.315 3.685 10 O -0.406 6.406 11 N -0.275 5.275 12 N -0.297 5.297 13 C 0.406 3.594 14 O -0.433 6.433 15 N -0.377 5.377 16 C 0.155 3.845 17 H 0.106 0.894 18 C -0.592 4.592 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.470 5.470 22 Si 0.743 3.257 23 H -0.202 1.202 24 H -0.195 1.195 25 H -0.207 1.207 26 C 0.359 3.641 27 F -0.191 7.191 28 F -0.198 7.198 29 F -0.117 7.117 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.263 0.737 38 H 0.283 0.717 39 H 0.223 0.777 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.924 -4.821 -13.127 16.589 hybrid contribution 0.881 1.153 0.315 1.485 sum 9.805 -3.669 -12.812 16.545 Atomic orbital electron populations 1.22170 0.93162 1.04210 1.03095 1.22621 0.95749 0.95292 0.83009 0.89875 1.88931 1.39703 1.67654 1.32411 1.23564 0.87673 0.96557 0.95047 1.23192 0.99830 0.98782 0.96173 1.22776 0.95611 0.99806 0.97712 0.87233 1.20289 0.84242 0.84987 0.78986 1.90730 1.60326 1.21583 1.68001 1.45017 1.30054 1.23343 1.29074 1.44736 1.30844 1.24708 1.29452 1.15909 0.82268 0.81501 0.79693 1.91040 1.30225 1.69592 1.52423 1.45319 1.38026 1.19249 1.35114 1.19705 0.90289 0.90944 0.83573 0.89371 1.20822 0.97708 1.24705 1.15994 0.90459 1.25075 0.96106 0.96880 0.96263 1.70396 1.18845 1.37447 1.20269 0.86189 0.80701 0.79598 0.79196 1.20155 1.19526 1.20734 1.23142 0.85962 0.79942 0.75044 1.92985 1.91012 1.71136 1.64013 1.93082 1.66458 1.71675 1.88583 1.93411 1.88310 1.78758 1.51205 0.90864 0.91171 0.90670 0.91784 0.88517 0.89406 0.88317 0.73674 0.71673 0.77736 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 8.41 37.15 0.31 -1.43 16 2 C 0.09 0.81 4.05 -26.16 -0.11 0.71 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 O -0.37 -3.80 11.19 -35.23 -0.39 -4.19 16 5 C 0.05 0.34 7.72 38.22 0.29 0.64 16 6 C -0.14 -1.07 6.65 -24.72 -0.16 -1.24 16 7 C -0.14 -1.10 3.43 -90.24 -0.31 -1.41 16 8 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 9 C 0.53 5.98 4.87 -10.99 -0.05 5.93 16 10 O -0.53 -7.76 14.82 5.55 0.08 -7.67 16 11 N -0.52 -6.02 5.83 31.22 0.18 -5.83 16 12 N -0.54 -8.09 6.26 27.63 0.17 -7.91 16 13 C 0.71 13.45 8.21 -86.92 -0.71 12.73 16 14 O -0.56 -12.98 15.75 5.28 0.08 -12.89 16 15 N -0.72 -13.58 4.95 -59.82 -0.30 -13.88 16 16 C 0.26 6.11 2.21 -69.09 -0.15 5.96 16 17 H 0.09 2.34 7.58 -51.93 -0.39 1.94 16 18 C -0.56 -13.24 8.46 -34.44 -0.29 -13.53 16 19 H 0.08 1.70 7.74 -52.48 -0.41 1.29 16 20 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 21 N -0.84 -22.02 9.50 55.43 0.53 -21.50 16 22 Si 0.92 19.05 29.54 -169.99 -5.02 14.03 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C 0.42 10.22 2.81 37.16 0.10 10.32 16 27 F -0.21 -4.89 16.94 2.25 0.04 -4.85 16 28 F -0.22 -5.35 15.67 2.25 0.04 -5.31 16 29 F -0.14 -3.63 12.91 2.25 0.03 -3.60 16 30 H 0.07 0.76 7.09 -51.92 -0.37 0.39 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.93 7.06 -51.93 -0.37 0.57 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.96 6.93 -51.93 -0.36 0.60 16 37 H 0.42 3.92 6.70 -182.60 -1.22 2.69 16 38 H 0.44 6.59 8.10 -182.60 -1.48 5.11 16 39 H 0.39 5.96 6.46 -40.82 -0.26 5.70 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -31.60 341.54 -7.12 -38.71 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.53 Total: 9.54 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: -1.17 Total: 20.22 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.59 Total: -49.12 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.23 Total: -24.76 kcal Atomic # 9 Polarization: -13.87 SS G_CDS: 0.10 Total: -13.77 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.60 -7.12 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.361 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds