Wall clock time and date at job start Tue Mar 31 2020 23:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.99552 * 2 1 4 4 O 1.43747 * 109.87948 * 238.91836 * 2 1 3 5 5 C 1.44369 * 106.98063 * 214.06066 * 4 2 1 6 6 C 1.55002 * 103.49174 * 40.05858 * 5 4 2 7 7 C 1.54104 * 109.88362 * 121.08791 * 2 1 3 8 8 H 1.09000 * 110.60197 * 240.18576 * 7 2 1 9 9 C 1.50700 * 110.48176 * 2.77780 * 7 2 1 10 10 O 1.21283 * 120.00178 * 84.29966 * 9 7 2 11 11 N 1.34776 * 120.00008 * 264.28894 * 9 7 2 12 12 N 1.40093 * 120.00244 * 180.02562 * 11 9 7 13 13 C 1.34778 * 120.00038 * 180.02562 * 12 11 9 14 14 O 1.21594 * 120.00187 * 179.97438 * 13 12 11 15 15 N 1.34773 * 120.00408 * 359.97438 * 13 12 11 16 16 C 1.46500 * 120.00632 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.46544 * 35.00071 * 16 15 13 18 18 C 1.50695 * 109.47208 * 155.00250 * 16 15 13 19 19 H 1.08006 * 120.00108 * 0.02562 * 18 16 15 20 20 C 1.37880 * 120.00128 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99643 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00016 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47052 * 269.99075 * 22 20 18 24 24 H 1.48501 * 109.47419 * 29.99689 * 22 20 18 25 25 H 1.48509 * 109.47047 * 149.99685 * 22 20 18 26 26 C 1.52996 * 109.47207 * 275.00494 * 16 15 13 27 27 F 1.39898 * 109.47037 * 299.99620 * 26 16 15 28 28 F 1.39900 * 109.47304 * 59.99701 * 26 16 15 29 29 F 1.39906 * 109.47074 * 179.97438 * 26 16 15 30 30 H 1.09010 * 109.47150 * 295.47447 * 1 2 3 31 31 H 1.08993 * 109.47901 * 55.47462 * 1 2 3 32 32 H 1.09007 * 109.47129 * 175.47883 * 1 2 3 33 33 H 1.09003 * 110.62220 * 281.56414 * 5 4 2 34 34 H 1.08995 * 110.62136 * 158.55831 * 5 4 2 35 35 H 1.09000 * 110.90958 * 204.77984 * 6 5 4 36 36 H 1.09002 * 110.93450 * 81.18508 * 6 5 4 37 37 H 0.97005 * 119.99708 * 0.02562 * 11 9 7 38 38 H 0.96999 * 120.00530 * 0.02562 * 12 11 9 39 39 H 0.97006 * 119.99508 * 0.02562 * 15 13 12 40 40 H 0.97004 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 3.2378 -1.3641 -0.7650 6 6 2.9196 -1.8915 0.6574 7 6 2.0541 -0.7483 1.2410 8 1 2.6615 -0.0873 1.8593 9 6 0.9074 -1.3106 2.0411 10 8 0.4261 -2.3824 1.7402 11 7 0.4169 -0.6225 3.0910 12 7 -0.6487 -1.1454 3.8351 13 6 -1.1395 -0.4570 4.8847 14 8 -2.0647 -0.9106 5.5303 15 7 -0.6049 0.7342 5.2189 16 6 -1.1387 1.4827 6.3595 17 1 -1.4517 0.7858 7.1369 18 6 -0.0717 2.3969 6.9041 19 1 0.9062 2.4186 6.4462 20 6 -0.3438 3.2058 7.9871 21 7 -1.5348 3.1798 8.5444 22 14 0.9786 4.3395 8.6617 23 1 1.7570 3.6258 9.7057 24 1 1.8870 4.7505 7.5612 25 1 0.3430 5.5436 9.2548 26 6 -2.3403 2.3144 5.9063 27 9 -1.9386 3.2089 4.9085 28 9 -3.3309 1.4657 5.4007 29 9 -2.8504 3.0288 6.9957 30 1 -0.3634 0.4420 0.9278 31 1 -0.3634 0.5824 -0.8466 32 1 -0.3634 -1.0245 -0.0810 33 1 4.0684 -0.6588 -0.7357 34 1 3.4583 -2.1907 -1.4403 35 1 3.8333 -2.0225 1.2372 36 1 2.3541 -2.8222 0.6102 37 1 0.8017 0.2349 3.3315 38 1 -1.0334 -2.0028 3.5949 39 1 0.1330 1.0963 4.7037 40 1 -1.7264 3.7491 9.3060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209329618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:32 Heat of formation + Delta-G solvation = -229.243366 kcal Electronic energy + Delta-G solvation = -31207.707304 eV Core-core repulsion = 26223.166945 eV Total energy + Delta-G solvation = -4984.540359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.39732 -48.03189 -47.70755 -42.01071 -41.00065 -39.42905 -36.85539 -36.62770 -34.41185 -33.88649 -32.46746 -31.78971 -30.01760 -27.32163 -26.58535 -24.10530 -23.86080 -23.12470 -22.04254 -21.48015 -20.33850 -19.10252 -18.91456 -18.69303 -18.61917 -17.89360 -17.62607 -17.05570 -16.80096 -16.66550 -16.49283 -16.32647 -15.95722 -15.70731 -15.15425 -14.99189 -14.92024 -14.55688 -14.43765 -14.27070 -14.01625 -13.92870 -13.87528 -13.45288 -13.37495 -13.12556 -13.08422 -12.83589 -12.59527 -12.52267 -12.23082 -12.16503 -12.00214 -11.89492 -11.71097 -11.59810 -11.20212 -10.67177 -10.59984 -10.28999 -9.43392 -8.19315 -6.50659 0.72294 1.28008 1.50959 1.52042 1.62988 1.88203 1.96849 2.40038 2.55563 2.86248 2.97075 3.13420 3.45052 3.68349 3.78077 3.84847 3.94593 4.08430 4.19671 4.22502 4.30075 4.34291 4.55688 4.59626 4.80803 4.86936 4.93054 4.96257 5.15742 5.17839 5.25645 5.28835 5.40310 5.65186 5.72718 5.93978 6.21838 6.53104 6.64273 7.15608 7.22594 7.37644 8.73392 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.003296 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.150651 B = 8492.079706 C = 9167.548285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.112 0.888 4 O -0.396 6.396 5 C 0.046 3.954 6 C -0.141 4.141 7 C -0.130 4.130 8 H 0.151 0.849 9 C 0.531 3.469 10 O -0.566 6.566 11 N -0.515 5.515 12 N -0.530 5.530 13 C 0.708 3.292 14 O -0.607 6.607 15 N -0.711 5.711 16 C 0.269 3.731 17 H 0.051 0.949 18 C -0.559 4.559 19 H 0.100 0.900 20 C 0.016 3.984 21 N -0.875 5.875 22 Si 0.984 3.016 23 H -0.273 1.273 24 H -0.253 1.253 25 H -0.289 1.289 26 C 0.411 3.589 27 F -0.201 7.201 28 F -0.220 7.220 29 F -0.150 7.150 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.434 0.566 38 H 0.439 0.561 39 H 0.408 0.592 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.431 -2.737 -14.483 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.033 3.967 3 H 0.130 0.870 4 O -0.316 6.316 5 C -0.030 4.030 6 C -0.179 4.179 7 C -0.153 4.153 8 H 0.169 0.831 9 C 0.319 3.681 10 O -0.443 6.443 11 N -0.268 5.268 12 N -0.285 5.285 13 C 0.407 3.593 14 O -0.483 6.483 15 N -0.367 5.367 16 C 0.161 3.839 17 H 0.069 0.931 18 C -0.596 4.596 19 H 0.118 0.882 20 C -0.190 4.190 21 N -0.509 5.509 22 Si 0.807 3.193 23 H -0.198 1.198 24 H -0.177 1.177 25 H -0.215 1.215 26 C 0.355 3.645 27 F -0.183 7.183 28 F -0.202 7.202 29 F -0.132 7.132 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.278 0.722 38 H 0.285 0.715 39 H 0.245 0.755 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.185 -3.581 -14.192 19.045 hybrid contribution -0.135 0.685 0.520 0.871 sum 12.050 -2.896 -13.672 18.453 Atomic orbital electron populations 1.22152 0.94974 1.02356 1.03184 1.22755 0.94399 0.96678 0.82911 0.86993 1.88905 1.41197 1.68213 1.33293 1.23772 0.87300 0.97254 0.94671 1.23209 1.00382 0.97289 0.97039 1.22944 0.94399 1.00563 0.97363 0.83075 1.21046 0.84386 0.84351 0.78329 1.90728 1.61478 1.23367 1.68731 1.45151 1.28905 1.23928 1.28807 1.44377 1.31440 1.24145 1.28554 1.15897 0.81847 0.81440 0.80083 1.91008 1.32311 1.70649 1.54337 1.44936 1.38439 1.18965 1.34332 1.19303 0.90112 0.90352 0.84103 0.93112 1.21215 0.98409 1.24097 1.15883 0.88219 1.25993 0.97968 0.98421 0.96595 1.70537 1.20994 1.38455 1.20873 0.85149 0.78118 0.77165 0.78840 1.19793 1.17657 1.21516 1.23367 0.86211 0.80090 0.74874 1.92987 1.90877 1.70870 1.63538 1.93072 1.66768 1.71795 1.88585 1.93384 1.88575 1.79138 1.52062 0.90954 0.90867 0.93507 0.89134 0.87997 0.86727 0.91129 0.72172 0.71537 0.75480 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 8.41 71.98 0.61 -2.72 16 2 C 0.09 1.36 4.05 30.97 0.13 1.49 16 3 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 4 O -0.40 -7.37 11.19 -148.98 -1.67 -9.04 16 5 C 0.05 0.53 7.72 72.67 0.56 1.09 16 6 C -0.14 -1.76 6.65 31.90 0.21 -1.55 16 7 C -0.13 -1.69 3.43 -10.55 -0.04 -1.72 16 8 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 9 C 0.53 11.11 4.87 87.66 0.43 11.54 16 10 O -0.57 -16.39 14.82 -3.04 -0.05 -16.44 16 11 N -0.51 -10.82 5.83 -173.53 -1.01 -11.83 16 12 N -0.53 -15.58 6.26 -184.74 -1.16 -16.73 16 13 C 0.71 26.86 8.21 179.06 1.47 28.33 16 14 O -0.61 -28.82 15.75 -4.01 -0.06 -28.89 16 15 N -0.71 -26.02 4.95 -461.42 -2.28 -28.30 16 16 C 0.27 12.61 2.21 44.24 0.10 12.70 16 17 H 0.05 2.79 7.58 -2.39 -0.02 2.77 16 18 C -0.56 -25.87 8.46 25.60 0.22 -25.65 16 19 H 0.10 4.06 7.74 -2.91 -0.02 4.04 16 20 C 0.02 0.77 5.20 84.66 0.44 1.21 16 21 N -0.87 -46.45 9.50 21.45 0.20 -46.25 16 22 Si 0.98 37.77 29.54 68.60 2.03 39.79 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.29 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.41 20.30 2.81 71.98 0.20 20.50 16 27 F -0.20 -9.17 16.94 44.97 0.76 -8.41 16 28 F -0.22 -11.07 15.67 44.97 0.70 -10.37 16 29 F -0.15 -8.18 12.91 44.97 0.58 -7.60 16 30 H 0.07 1.39 7.09 -2.38 -0.02 1.37 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.17 7.06 -2.38 -0.02 1.16 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.31 6.93 -2.39 -0.02 1.29 16 37 H 0.43 6.71 6.70 -213.32 -1.43 5.28 16 38 H 0.44 13.26 8.10 -213.33 -1.73 11.53 16 39 H 0.41 11.51 6.46 -92.70 -0.60 10.91 16 40 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -70.37 341.54 -0.24 -70.61 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -2.61 Total: 28.23 kcal Atomic # 6 Polarization: 40.89 SS G_CDS: 4.32 Total: 45.21 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.25 Total: -103.11 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -1.77 Total: -54.36 kcal Atomic # 9 Polarization: -28.42 SS G_CDS: 2.05 Total: -26.37 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.79 kcal Total: -70.37 -0.24 -70.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.636 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds