Wall clock time and date at job start Tue Mar 31 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.87157 * 2 1 4 4 O 1.43743 * 110.00522 * 238.91148 * 2 1 3 5 5 C 1.44382 * 106.97548 * 267.02299 * 4 2 1 6 6 C 1.55216 * 103.56562 * 320.00747 * 5 4 2 7 7 C 1.54103 * 109.87737 * 121.00775 * 2 1 3 8 8 H 1.09000 * 110.49019 * 358.73481 * 7 2 1 9 9 C 1.50700 * 110.48665 * 236.21846 * 7 2 1 10 10 O 1.21278 * 120.00010 * 1.84741 * 9 7 2 11 11 N 1.34778 * 119.99768 * 181.84196 * 9 7 2 12 12 N 1.40103 * 119.99944 * 179.97438 * 11 9 7 13 13 C 1.34773 * 120.00122 * 180.02562 * 12 11 9 14 14 O 1.21584 * 119.99830 * 180.02562 * 13 12 11 15 15 N 1.34773 * 119.99978 * 359.97438 * 13 12 11 16 16 C 1.46498 * 120.00133 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.47129 * 35.00281 * 16 15 13 18 18 C 1.50701 * 109.47342 * 154.99968 * 16 15 13 19 19 H 1.07998 * 120.00296 * 116.79260 * 18 16 15 20 20 C 1.37879 * 119.99950 * 296.79104 * 18 16 15 21 21 N 1.31515 * 120.00166 * 173.94136 * 20 18 16 22 22 Si 1.86797 * 119.99939 * 353.94583 * 20 18 16 23 23 H 1.48500 * 109.47285 * 85.16902 * 22 20 18 24 24 H 1.48506 * 109.47340 * 205.16547 * 22 20 18 25 25 H 1.48498 * 109.47248 * 325.16494 * 22 20 18 26 26 C 1.53001 * 109.47193 * 275.00012 * 16 15 13 27 27 F 1.39897 * 109.46927 * 65.25160 * 26 16 15 28 28 F 1.39897 * 109.46928 * 185.24847 * 26 16 15 29 29 F 1.39898 * 109.47171 * 305.24935 * 26 16 15 30 30 H 1.09000 * 109.46639 * 298.99235 * 1 2 3 31 31 H 1.09001 * 109.46435 * 58.99000 * 1 2 3 32 32 H 1.08996 * 109.47157 * 178.99440 * 1 2 3 33 33 H 1.09000 * 110.62068 * 78.43907 * 5 4 2 34 34 H 1.09000 * 110.61760 * 201.27853 * 5 4 2 35 35 H 1.09003 * 110.89558 * 278.74803 * 6 5 4 36 36 H 1.09005 * 111.01984 * 155.07544 * 6 5 4 37 37 H 0.96998 * 120.00378 * 0.02562 * 11 9 7 38 38 H 0.97004 * 119.99568 * 0.02562 * 12 11 9 39 39 H 0.96997 * 120.00083 * 359.97438 * 15 13 12 40 40 H 0.96998 * 119.99936 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0218 -0.6974 -1.1567 5 6 2.2334 -2.0703 -0.7628 6 6 2.8350 -1.9514 0.6631 7 6 2.0540 -0.7466 1.2421 8 1 1.2237 -1.0909 1.8588 9 6 2.9715 0.1411 2.0430 10 8 3.1720 1.2834 1.6883 11 7 3.5691 -0.3345 3.1534 12 7 4.4226 0.4905 3.8977 13 6 5.0206 0.0148 5.0078 14 8 5.7608 0.7309 5.6539 15 7 4.7973 -1.2544 5.4023 16 6 5.4469 -1.7714 6.6093 17 1 5.5268 -0.9745 7.3487 18 6 4.6273 -2.9020 7.1760 19 1 5.0428 -3.8975 7.2269 20 6 3.3469 -2.6653 7.6296 21 7 2.5890 -3.6694 8.0129 22 14 2.6888 -0.9185 7.6994 23 1 2.1316 -0.5461 6.3742 24 1 1.6204 -0.8327 8.7273 25 1 3.7909 0.0120 8.0523 26 6 6.8455 -2.2822 6.2569 27 9 7.6431 -1.2097 5.8437 28 9 7.4193 -2.8839 7.3820 29 9 6.7526 -3.2199 5.2229 30 1 -0.3632 0.4981 0.8989 31 1 -0.3632 0.5295 -0.8808 32 1 -0.3633 -1.0275 -0.0180 33 1 1.2878 -2.6117 -0.7347 34 1 2.9346 -2.5598 -1.4387 35 1 3.9028 -1.7373 0.6179 36 1 2.6448 -2.8538 1.2442 37 1 3.4090 -1.2482 3.4370 38 1 4.5830 1.4041 3.6139 39 1 4.2059 -1.8254 4.8875 40 1 1.6881 -3.5029 8.3316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209329620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:35 Heat of formation + Delta-G solvation = -229.677941 kcal Electronic energy + Delta-G solvation = -31228.366276 eV Core-core repulsion = 26243.807072 eV Total energy + Delta-G solvation = -4984.559203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.17915 -46.68578 -46.66828 -40.94734 -39.79380 -38.56039 -35.67033 -35.13311 -33.07586 -32.59710 -31.62257 -30.63112 -28.94363 -27.03292 -25.13935 -22.96257 -22.20688 -22.05002 -20.65791 -20.49204 -19.17365 -18.14365 -18.01690 -17.61928 -17.06297 -16.61364 -16.54726 -16.51864 -15.80788 -15.29783 -15.18682 -14.77118 -14.59474 -14.46926 -14.08820 -13.64737 -13.61316 -13.56003 -13.15905 -13.12991 -13.07491 -12.88205 -12.86234 -12.77364 -12.46497 -12.26819 -11.97854 -11.78124 -11.43014 -11.32971 -11.23516 -11.20288 -10.80128 -10.47324 -10.31336 -10.07546 -9.93955 -9.89076 -9.14149 -8.80729 -8.24647 -6.66143 -4.80263 1.83037 2.23890 2.93528 3.09098 3.19766 3.24871 3.36220 3.54035 3.81199 3.97733 4.01722 4.08607 4.39566 4.67764 4.74064 4.78682 4.86564 4.88957 5.01972 5.09525 5.10839 5.21498 5.24494 5.32267 5.39034 5.49688 5.61734 5.81278 5.92328 6.15343 6.39686 6.60020 6.61101 6.82302 6.94131 7.30223 7.64971 7.83502 8.35824 8.39822 8.74893 8.87586 10.41489 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.003867 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.131397 B = 7238.617561 C = 7772.339911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.083 3.917 3 H 0.119 0.881 4 O -0.367 6.367 5 C 0.047 3.953 6 C -0.151 4.151 7 C -0.135 4.135 8 H 0.119 0.881 9 C 0.525 3.475 10 O -0.534 6.534 11 N -0.521 5.521 12 N -0.539 5.539 13 C 0.698 3.302 14 O -0.566 6.566 15 N -0.728 5.728 16 C 0.216 3.784 17 H 0.095 0.905 18 C -0.537 4.537 19 H 0.098 0.902 20 C 0.098 3.902 21 N -0.857 5.857 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.257 1.257 26 C 0.442 3.558 27 F -0.192 7.192 28 F -0.183 7.183 29 F -0.190 7.190 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.424 0.576 38 H 0.437 0.563 39 H 0.391 0.609 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 1.260 -13.221 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 H 0.136 0.864 4 O -0.286 6.286 5 C -0.030 4.030 6 C -0.189 4.189 7 C -0.158 4.158 8 H 0.137 0.863 9 C 0.310 3.690 10 O -0.409 6.409 11 N -0.271 5.271 12 N -0.297 5.297 13 C 0.398 3.602 14 O -0.439 6.439 15 N -0.387 5.387 16 C 0.113 3.887 17 H 0.112 0.888 18 C -0.575 4.575 19 H 0.116 0.884 20 C -0.112 4.112 21 N -0.490 5.490 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.181 1.181 26 C 0.386 3.614 27 F -0.173 7.173 28 F -0.164 7.164 29 F -0.172 7.172 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.265 0.735 38 H 0.282 0.718 39 H 0.227 0.773 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.744 2.459 -12.993 13.744 hybrid contribution -0.628 0.189 0.091 0.662 sum -4.371 2.648 -12.902 13.877 Atomic orbital electron populations 1.22285 0.94885 1.02614 1.02982 1.22775 0.94006 0.98259 0.82472 0.86392 1.88958 1.85941 1.20697 1.33000 1.23591 1.00088 0.84703 0.94584 1.23294 1.01111 0.97179 0.97319 1.22753 0.98627 0.96294 0.98080 0.86290 1.20445 0.80649 0.88471 0.79390 1.90713 1.62870 1.18662 1.68671 1.44902 1.44410 1.13338 1.24492 1.44801 1.46598 1.13651 1.24616 1.16305 0.80403 0.83796 0.79651 1.91008 1.40747 1.58140 1.54028 1.47014 1.50646 1.10726 1.30312 1.20230 0.85445 0.98229 0.84775 0.88770 1.20830 0.99528 0.95091 1.42028 0.88405 1.24916 0.96018 0.97506 0.92798 1.69869 1.09017 1.31314 1.38756 0.86810 0.79657 0.84549 0.78646 1.19838 1.21041 1.18075 1.21459 0.90690 0.75204 0.74060 1.93160 1.77268 1.56188 1.90705 1.93115 1.86605 1.84306 1.52381 1.93078 1.96640 1.67131 1.60348 0.91285 0.91384 0.92153 0.91706 0.88480 0.89529 0.88486 0.73452 0.71769 0.77260 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.31 37.16 0.35 -1.02 16 2 C 0.08 0.84 3.70 -26.15 -0.10 0.74 16 3 H 0.12 1.43 6.44 -51.93 -0.33 1.09 16 4 O -0.37 -4.01 11.20 -35.23 -0.39 -4.41 16 5 C 0.05 0.36 7.67 38.33 0.29 0.66 16 6 C -0.15 -1.16 6.69 -24.60 -0.16 -1.33 16 7 C -0.13 -1.23 3.06 -90.24 -0.28 -1.51 16 8 H 0.12 0.85 7.70 -51.93 -0.40 0.45 16 9 C 0.52 6.57 7.15 -10.99 -0.08 6.49 16 10 O -0.53 -8.32 15.10 5.56 0.08 -8.24 16 11 N -0.52 -6.76 6.22 31.22 0.19 -6.56 16 12 N -0.54 -8.62 6.26 27.63 0.17 -8.45 16 13 C 0.70 13.43 8.07 -86.92 -0.70 12.73 16 14 O -0.57 -12.70 15.75 5.29 0.08 -12.62 16 15 N -0.73 -13.84 3.17 -59.82 -0.19 -14.03 16 16 C 0.22 4.69 1.41 -69.08 -0.10 4.59 16 17 H 0.09 2.19 6.29 -51.93 -0.33 1.87 16 18 C -0.54 -12.81 8.64 -34.44 -0.30 -13.10 16 19 H 0.10 2.55 7.91 -52.49 -0.42 2.13 16 20 C 0.10 2.37 5.46 -17.82 -0.10 2.27 16 21 N -0.86 -21.99 13.96 55.43 0.77 -21.21 16 22 Si 0.88 19.19 26.14 -169.99 -4.44 14.75 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.26 -5.90 6.55 56.52 0.37 -5.53 16 26 C 0.44 9.27 2.79 37.16 0.10 9.37 16 27 F -0.19 -4.07 15.84 2.25 0.04 -4.03 16 28 F -0.18 -3.88 16.83 2.25 0.04 -3.84 16 29 F -0.19 -3.82 16.97 2.25 0.04 -3.78 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.42 4.74 6.70 -182.60 -1.22 3.52 16 38 H 0.44 6.87 8.10 -182.59 -1.48 5.39 16 39 H 0.39 6.52 6.51 -40.82 -0.27 6.26 16 40 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -30.08 346.81 -6.00 -36.08 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.55 Total: 11.22 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: -1.07 Total: 19.90 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.95 Total: -50.25 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.23 Total: -25.26 kcal Atomic # 9 Polarization: -11.77 SS G_CDS: 0.11 Total: -11.66 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.44 Total: 14.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.08 -6.00 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.594 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds