Wall clock time and date at job start Tue Mar 31 2020 23:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.87157 * 2 1 4 4 O 1.43743 * 110.00522 * 238.91148 * 2 1 3 5 5 C 1.44382 * 106.97548 * 267.02299 * 4 2 1 6 6 C 1.55216 * 103.56562 * 320.00747 * 5 4 2 7 7 C 1.54103 * 109.87737 * 121.00775 * 2 1 3 8 8 H 1.09000 * 110.49019 * 358.73481 * 7 2 1 9 9 C 1.50700 * 110.48665 * 236.21846 * 7 2 1 10 10 O 1.21278 * 120.00010 * 1.84741 * 9 7 2 11 11 N 1.34778 * 119.99768 * 181.84196 * 9 7 2 12 12 N 1.40103 * 119.99944 * 179.97438 * 11 9 7 13 13 C 1.34773 * 120.00122 * 180.02562 * 12 11 9 14 14 O 1.21584 * 119.99830 * 180.02562 * 13 12 11 15 15 N 1.34773 * 119.99978 * 359.97438 * 13 12 11 16 16 C 1.46498 * 120.00133 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.47129 * 35.00281 * 16 15 13 18 18 C 1.50701 * 109.47342 * 154.99968 * 16 15 13 19 19 H 1.07998 * 120.00296 * 116.79260 * 18 16 15 20 20 C 1.37879 * 119.99950 * 296.79104 * 18 16 15 21 21 N 1.31515 * 120.00166 * 173.94136 * 20 18 16 22 22 Si 1.86797 * 119.99939 * 353.94583 * 20 18 16 23 23 H 1.48500 * 109.47285 * 85.16902 * 22 20 18 24 24 H 1.48506 * 109.47340 * 205.16547 * 22 20 18 25 25 H 1.48498 * 109.47248 * 325.16494 * 22 20 18 26 26 C 1.53001 * 109.47193 * 275.00012 * 16 15 13 27 27 F 1.39897 * 109.46927 * 65.25160 * 26 16 15 28 28 F 1.39897 * 109.46928 * 185.24847 * 26 16 15 29 29 F 1.39898 * 109.47171 * 305.24935 * 26 16 15 30 30 H 1.09000 * 109.46639 * 298.99235 * 1 2 3 31 31 H 1.09001 * 109.46435 * 58.99000 * 1 2 3 32 32 H 1.08996 * 109.47157 * 178.99440 * 1 2 3 33 33 H 1.09000 * 110.62068 * 78.43907 * 5 4 2 34 34 H 1.09000 * 110.61760 * 201.27853 * 5 4 2 35 35 H 1.09003 * 110.89558 * 278.74803 * 6 5 4 36 36 H 1.09005 * 111.01984 * 155.07544 * 6 5 4 37 37 H 0.96998 * 120.00378 * 0.02562 * 11 9 7 38 38 H 0.97004 * 119.99568 * 0.02562 * 12 11 9 39 39 H 0.96997 * 120.00083 * 359.97438 * 15 13 12 40 40 H 0.96998 * 119.99936 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0218 -0.6974 -1.1567 5 6 2.2334 -2.0703 -0.7628 6 6 2.8350 -1.9514 0.6631 7 6 2.0540 -0.7466 1.2421 8 1 1.2237 -1.0909 1.8588 9 6 2.9715 0.1411 2.0430 10 8 3.1720 1.2834 1.6883 11 7 3.5691 -0.3345 3.1534 12 7 4.4226 0.4905 3.8977 13 6 5.0206 0.0148 5.0078 14 8 5.7608 0.7309 5.6539 15 7 4.7973 -1.2544 5.4023 16 6 5.4469 -1.7714 6.6093 17 1 5.5268 -0.9745 7.3487 18 6 4.6273 -2.9020 7.1760 19 1 5.0428 -3.8975 7.2269 20 6 3.3469 -2.6653 7.6296 21 7 2.5890 -3.6694 8.0129 22 14 2.6888 -0.9185 7.6994 23 1 2.1316 -0.5461 6.3742 24 1 1.6204 -0.8327 8.7273 25 1 3.7909 0.0120 8.0523 26 6 6.8455 -2.2822 6.2569 27 9 7.6431 -1.2097 5.8437 28 9 7.4193 -2.8839 7.3820 29 9 6.7526 -3.2199 5.2229 30 1 -0.3632 0.4981 0.8989 31 1 -0.3632 0.5295 -0.8808 32 1 -0.3633 -1.0275 -0.0180 33 1 1.2878 -2.6117 -0.7347 34 1 2.9346 -2.5598 -1.4387 35 1 3.9028 -1.7373 0.6179 36 1 2.6448 -2.8538 1.2442 37 1 3.4090 -1.2482 3.4370 38 1 4.5830 1.4041 3.6139 39 1 4.2059 -1.8254 4.8875 40 1 1.6881 -3.5029 8.3316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209329620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:35 Heat of formation + Delta-G solvation = -251.979077 kcal Electronic energy + Delta-G solvation = -31229.333326 eV Core-core repulsion = 26243.807072 eV Total energy + Delta-G solvation = -4985.526253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.88229 -48.39227 -48.36132 -41.99656 -41.07803 -39.58674 -36.96053 -36.84642 -34.42717 -33.92484 -32.37397 -31.74664 -30.55625 -27.75496 -26.95575 -23.87921 -23.75648 -22.76044 -22.18457 -21.54149 -20.57668 -19.70243 -19.35910 -19.09748 -18.61428 -18.36485 -17.81992 -17.30830 -16.84692 -16.64176 -16.50645 -16.28619 -15.80677 -15.59088 -15.31820 -15.25968 -15.01729 -14.85243 -14.82448 -14.62882 -14.56313 -14.49587 -14.27702 -13.74863 -13.73760 -13.20188 -13.05545 -12.87951 -12.70452 -12.51131 -12.42352 -12.12771 -11.99526 -11.94742 -11.85721 -11.80187 -11.20660 -11.00390 -10.61366 -10.43413 -9.52993 -8.54447 -6.72013 0.64220 1.19602 1.22337 1.34982 1.44585 1.70217 1.82773 2.12560 2.18539 2.84678 2.89292 3.10861 3.16798 3.37073 3.37755 3.49072 3.71489 3.88040 4.08702 4.19092 4.27862 4.41912 4.45647 4.59652 4.68390 4.85356 4.89373 4.92746 5.02487 5.14326 5.18426 5.20403 5.28656 5.48437 5.89318 5.93798 6.12366 6.43932 6.51770 6.98310 7.06168 7.26848 8.57098 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.003867 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.131397 B = 7238.617561 C = 7772.339911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.090 0.910 4 O -0.393 6.393 5 C 0.042 3.958 6 C -0.148 4.148 7 C -0.128 4.128 8 H 0.149 0.851 9 C 0.527 3.473 10 O -0.566 6.566 11 N -0.515 5.515 12 N -0.532 5.532 13 C 0.701 3.299 14 O -0.600 6.600 15 N -0.722 5.722 16 C 0.226 3.774 17 H 0.080 0.920 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.891 5.891 22 Si 0.921 3.079 23 H -0.250 1.250 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.444 3.556 27 F -0.192 7.192 28 F -0.185 7.185 29 F -0.183 7.183 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.433 0.567 38 H 0.440 0.560 39 H 0.405 0.595 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 0.784 -14.303 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.108 0.892 4 O -0.313 6.313 5 C -0.034 4.034 6 C -0.186 4.186 7 C -0.150 4.150 8 H 0.166 0.834 9 C 0.315 3.685 10 O -0.443 6.443 11 N -0.268 5.268 12 N -0.288 5.288 13 C 0.401 3.599 14 O -0.476 6.476 15 N -0.381 5.381 16 C 0.121 3.879 17 H 0.098 0.902 18 C -0.575 4.575 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.746 3.254 23 H -0.174 1.174 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.389 3.611 27 F -0.173 7.173 28 F -0.167 7.167 29 F -0.165 7.165 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.277 0.723 38 H 0.286 0.714 39 H 0.243 0.757 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.051 1.961 -14.125 15.128 hybrid contribution -0.177 0.334 0.344 0.511 sum -5.228 2.295 -13.781 14.917 Atomic orbital electron populations 1.22245 0.93165 1.03696 1.03163 1.22739 0.95290 0.97022 0.82759 0.89186 1.88932 1.86257 1.22434 1.33631 1.23816 1.01448 0.83442 0.94663 1.23349 1.00133 0.97445 0.97660 1.22858 0.98732 0.95933 0.97503 0.83378 1.21155 0.80185 0.88423 0.78783 1.90712 1.63888 1.20377 1.69315 1.45052 1.43922 1.13409 1.24387 1.44509 1.46360 1.14047 1.23876 1.16181 0.80337 0.83308 0.80121 1.90989 1.42258 1.58856 1.55467 1.46459 1.50865 1.11068 1.29758 1.19867 0.85667 0.97045 0.85350 0.90231 1.20714 0.99708 0.94459 1.42644 0.91005 1.25318 0.96081 0.99659 0.92429 1.69922 1.09695 1.32801 1.40121 0.86124 0.78557 0.80995 0.79677 1.17394 1.21087 1.20005 1.21320 0.90357 0.75282 0.74182 1.93163 1.77208 1.56249 1.90686 1.93111 1.86607 1.84341 1.52599 1.93090 1.96595 1.66830 1.59951 0.90740 0.91665 0.90531 0.89643 0.87585 0.90760 0.85730 0.72282 0.71419 0.75672 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.31 71.98 0.67 -1.60 16 2 C 0.08 1.49 3.70 30.97 0.11 1.61 16 3 H 0.09 2.17 6.44 -2.39 -0.02 2.16 16 4 O -0.39 -8.00 11.20 -148.98 -1.67 -9.67 16 5 C 0.04 0.54 7.67 72.74 0.56 1.09 16 6 C -0.15 -1.83 6.69 31.97 0.21 -1.61 16 7 C -0.13 -1.99 3.06 -10.55 -0.03 -2.02 16 8 H 0.15 1.49 7.70 -2.39 -0.02 1.48 16 9 C 0.53 12.20 7.15 87.66 0.63 12.83 16 10 O -0.57 -17.21 15.10 -3.02 -0.05 -17.26 16 11 N -0.52 -12.18 6.22 -173.53 -1.08 -13.26 16 12 N -0.53 -16.17 6.26 -184.75 -1.16 -17.33 16 13 C 0.70 25.96 8.07 179.06 1.45 27.40 16 14 O -0.60 -26.46 15.75 -3.98 -0.06 -26.53 16 15 N -0.72 -26.27 3.17 -461.42 -1.46 -27.73 16 16 C 0.23 9.60 1.41 44.25 0.06 9.66 16 17 H 0.08 3.68 6.29 -2.39 -0.02 3.67 16 18 C -0.54 -25.37 8.64 25.60 0.22 -25.15 16 19 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16 20 C 0.07 3.45 5.46 84.66 0.46 3.91 16 21 N -0.89 -45.13 13.96 21.45 0.30 -44.83 16 22 Si 0.92 38.42 26.14 68.60 1.79 40.21 16 23 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -12.31 6.55 99.48 0.65 -11.66 16 26 C 0.44 18.30 2.79 71.98 0.20 18.50 16 27 F -0.19 -7.97 15.84 44.97 0.71 -7.25 16 28 F -0.18 -7.79 16.83 44.97 0.76 -7.03 16 29 F -0.18 -7.11 16.97 44.97 0.76 -6.35 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.09 0.75 8.13 -2.39 -0.02 0.73 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 36 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.43 8.38 6.70 -213.32 -1.43 6.95 16 38 H 0.44 13.35 8.10 -213.31 -1.73 11.62 16 39 H 0.40 12.56 6.51 -92.71 -0.60 11.96 16 40 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -64.19 346.81 0.72 -63.47 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -2.67 Total: 28.94 kcal Atomic # 6 Polarization: 40.07 SS G_CDS: 4.54 Total: 44.61 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -3.40 Total: -103.15 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.78 Total: -53.45 kcal Atomic # 9 Polarization: -22.87 SS G_CDS: 2.23 Total: -20.63 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.79 Total: 40.21 kcal Total: -64.19 0.72 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.504 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds