Wall clock time and date at job start Tue Mar 31 2020 23:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.86896 * 2 1 4 4 O 1.43741 * 110.00158 * 238.91007 * 2 1 3 5 5 C 1.44371 * 106.97882 * 267.01947 * 4 2 1 6 6 C 1.55227 * 103.56763 * 320.01497 * 5 4 2 7 7 C 1.54094 * 109.87538 * 121.00683 * 2 1 3 8 8 H 1.08998 * 110.49070 * 358.73277 * 7 2 1 9 9 C 1.50706 * 110.48685 * 236.22294 * 7 2 1 10 10 O 1.21281 * 119.99956 * 1.84192 * 9 7 2 11 11 N 1.34775 * 120.00187 * 181.84873 * 9 7 2 12 12 N 1.40095 * 120.00122 * 179.97438 * 11 9 7 13 13 C 1.34779 * 120.00016 * 179.97438 * 12 11 9 14 14 O 1.21583 * 119.99972 * 180.02562 * 13 12 11 15 15 N 1.34775 * 120.00127 * 0.02562 * 13 12 11 16 16 C 1.46498 * 120.00358 * 179.97438 * 15 13 12 17 17 H 1.09006 * 109.46924 * 325.00090 * 16 15 13 18 18 C 1.50698 * 109.47579 * 205.00216 * 16 15 13 19 19 H 1.08007 * 119.99746 * 359.97438 * 18 16 15 20 20 C 1.37870 * 120.00153 * 180.02562 * 18 16 15 21 21 N 1.31515 * 120.00388 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99851 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47237 * 60.00443 * 22 20 18 24 24 H 1.48507 * 109.46968 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47424 * 300.00141 * 22 20 18 26 26 C 1.52996 * 109.46880 * 84.99947 * 16 15 13 27 27 F 1.39906 * 109.47363 * 60.00359 * 26 16 15 28 28 F 1.39904 * 109.47245 * 180.02562 * 26 16 15 29 29 F 1.39899 * 109.47328 * 300.00155 * 26 16 15 30 30 H 1.09000 * 109.47613 * 298.99652 * 1 2 3 31 31 H 1.09003 * 109.46905 * 58.99636 * 1 2 3 32 32 H 1.08995 * 109.46931 * 178.99142 * 1 2 3 33 33 H 1.09002 * 110.61886 * 78.44181 * 5 4 2 34 34 H 1.09000 * 110.62282 * 201.28448 * 5 4 2 35 35 H 1.08999 * 110.89081 * 278.74619 * 6 5 4 36 36 H 1.08993 * 111.02521 * 155.06818 * 6 5 4 37 37 H 0.97009 * 119.99584 * 359.97438 * 11 9 7 38 38 H 0.97000 * 119.99944 * 0.02562 * 12 11 9 39 39 H 0.97000 * 119.99561 * 0.02562 * 15 13 12 40 40 H 0.96992 * 120.00306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6975 -1.1567 5 6 2.2334 -2.0702 -0.7629 6 6 2.8350 -1.9513 0.6631 7 6 2.0540 -0.7465 1.2421 8 1 1.2237 -1.0908 1.8587 9 6 2.9714 0.1412 2.0430 10 8 3.1719 1.2835 1.6883 11 7 3.5691 -0.3344 3.1534 12 7 4.4224 0.4907 3.8977 13 6 5.0197 0.0153 5.0084 14 8 5.7599 0.7314 5.6545 15 7 4.7966 -1.2540 5.4028 16 6 5.4463 -1.7710 6.6098 17 1 6.4418 -1.3364 6.7011 18 6 5.5596 -3.2708 6.5163 19 1 5.1848 -3.7873 5.6449 20 6 6.1409 -3.9836 7.5433 21 7 6.5969 -3.3547 8.6045 22 14 6.2807 -5.8428 7.4276 23 1 7.0902 -6.2052 6.2365 24 1 6.9394 -6.3668 8.6511 25 1 4.9244 -6.4344 7.3029 26 6 4.6125 -1.3981 7.8373 27 9 3.3348 -1.9559 7.7202 28 9 5.2332 -1.8913 8.9900 29 9 4.5074 -0.0058 7.9242 30 1 -0.3634 0.4982 0.8988 31 1 -0.3633 0.5294 -0.8809 32 1 -0.3633 -1.0275 -0.0181 33 1 1.2878 -2.6116 -0.7347 34 1 2.9346 -2.5598 -1.4387 35 1 3.9028 -1.7372 0.6179 36 1 2.6448 -2.8536 1.2443 37 1 3.4085 -1.2480 3.4373 38 1 4.5827 1.4043 3.6140 39 1 4.2064 -1.8254 4.8871 40 1 7.0055 -3.8562 9.3272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209329621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:39 Heat of formation + Delta-G solvation = -208.696123 kcal Electronic energy + Delta-G solvation = -30927.128900 eV Core-core repulsion = 25943.479537 eV Total energy + Delta-G solvation = -4983.649363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.43175 -46.08595 -45.69516 -40.96532 -39.73307 -38.54600 -35.64757 -34.89368 -33.10954 -32.62684 -31.64897 -30.56821 -28.31023 -27.05583 -24.68519 -22.99367 -22.30143 -22.08515 -20.63042 -20.38742 -19.21128 -18.09632 -17.29916 -16.95866 -16.73995 -16.66399 -16.55864 -16.00894 -15.50478 -15.35339 -14.98198 -14.89475 -14.56866 -14.49995 -13.98203 -13.68541 -13.41709 -13.12109 -13.00230 -12.64877 -12.49158 -12.47873 -12.36898 -12.30609 -12.07665 -11.90643 -11.82223 -11.49002 -11.33556 -11.24722 -11.23985 -10.96253 -10.89805 -10.57288 -10.35698 -9.95570 -9.87784 -9.81345 -8.85328 -8.60477 -8.20218 -6.33602 -4.59284 1.82557 2.21872 3.12139 3.16508 3.19156 3.33806 3.47205 3.50393 3.98823 4.04931 4.11325 4.35765 4.47596 4.66929 4.73651 4.83317 4.83605 5.03024 5.08895 5.17432 5.19906 5.34824 5.45131 5.57889 5.71471 5.76873 5.78092 5.88969 6.08567 6.37459 6.48263 6.57217 6.87666 7.04937 7.31045 7.36233 7.51534 7.79279 8.33768 8.45152 8.82349 9.09241 10.57876 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003275 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.677493 B = 8547.652401 C = 9654.173614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 H 0.119 0.881 4 O -0.367 6.367 5 C 0.047 3.953 6 C -0.151 4.151 7 C -0.134 4.134 8 H 0.119 0.881 9 C 0.524 3.476 10 O -0.533 6.533 11 N -0.521 5.521 12 N -0.539 5.539 13 C 0.707 3.293 14 O -0.560 6.560 15 N -0.722 5.722 16 C 0.261 3.739 17 H 0.089 0.911 18 C -0.556 4.556 19 H 0.077 0.923 20 C 0.067 3.933 21 N -0.837 5.837 22 Si 0.917 3.083 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.415 3.585 27 F -0.210 7.210 28 F -0.136 7.136 29 F -0.216 7.216 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.422 0.578 38 H 0.438 0.562 39 H 0.388 0.612 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 -0.688 -13.857 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 H 0.136 0.864 4 O -0.286 6.286 5 C -0.030 4.030 6 C -0.189 4.189 7 C -0.157 4.157 8 H 0.137 0.863 9 C 0.309 3.691 10 O -0.408 6.408 11 N -0.271 5.271 12 N -0.298 5.298 13 C 0.406 3.594 14 O -0.432 6.432 15 N -0.377 5.377 16 C 0.155 3.845 17 H 0.106 0.894 18 C -0.593 4.593 19 H 0.095 0.905 20 C -0.143 4.143 21 N -0.470 5.470 22 Si 0.743 3.257 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C 0.359 3.641 27 F -0.192 7.192 28 F -0.117 7.117 29 F -0.198 7.198 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.264 0.736 38 H 0.284 0.716 39 H 0.223 0.777 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.439 0.593 -13.457 16.448 hybrid contribution -0.543 -1.395 0.397 1.549 sum -9.981 -0.802 -13.060 16.457 Atomic orbital electron populations 1.22285 0.94889 1.02561 1.03018 1.22782 0.93999 0.98310 0.82484 0.86356 1.88962 1.85939 1.20671 1.33012 1.23591 1.00055 0.84736 0.94616 1.23292 1.01190 0.97113 0.97303 1.22741 0.98575 0.96267 0.98074 0.86348 1.20435 0.80732 0.88473 0.79438 1.90723 1.62828 1.18680 1.68591 1.44869 1.44414 1.13274 1.24545 1.44753 1.46813 1.13576 1.24635 1.15907 0.80664 0.83259 0.79536 1.91038 1.40619 1.57688 1.53865 1.45318 1.51585 1.10811 1.29990 1.19706 0.92050 0.96680 0.76056 0.89350 1.20781 1.43780 0.88180 1.06544 0.90505 1.25070 0.94552 1.00279 0.94394 1.70379 1.34027 1.36027 1.06538 0.86250 0.78645 0.82927 0.77894 1.19751 1.20797 1.19807 1.23149 0.78739 0.72394 0.89820 1.92986 1.43849 1.85754 1.96578 1.93411 1.80615 1.85922 1.51723 1.93082 1.96401 1.33237 1.97082 0.91257 0.91384 0.92208 0.91755 0.88486 0.89484 0.88594 0.73620 0.71642 0.77749 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.31 37.16 0.35 -0.88 16 2 C 0.08 0.76 3.70 -26.16 -0.10 0.67 16 3 H 0.12 1.35 6.44 -51.93 -0.33 1.01 16 4 O -0.37 -3.78 11.20 -35.23 -0.39 -4.17 16 5 C 0.05 0.33 7.67 38.34 0.29 0.62 16 6 C -0.15 -1.01 6.69 -24.60 -0.16 -1.17 16 7 C -0.13 -1.07 3.06 -90.24 -0.28 -1.35 16 8 H 0.12 0.67 7.70 -51.93 -0.40 0.27 16 9 C 0.52 5.98 7.15 -10.98 -0.08 5.90 16 10 O -0.53 -7.91 15.10 5.56 0.08 -7.83 16 11 N -0.52 -6.04 6.22 31.22 0.19 -5.85 16 12 N -0.54 -8.19 6.26 27.63 0.17 -8.02 16 13 C 0.71 13.53 8.21 -86.92 -0.71 12.82 16 14 O -0.56 -13.00 15.75 5.29 0.08 -12.92 16 15 N -0.72 -13.61 4.95 -59.82 -0.30 -13.91 16 16 C 0.26 6.12 2.21 -69.09 -0.15 5.97 16 17 H 0.09 2.34 7.58 -51.93 -0.39 1.95 16 18 C -0.56 -13.22 8.46 -34.44 -0.29 -13.51 16 19 H 0.08 1.68 7.74 -52.48 -0.41 1.27 16 20 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 21 N -0.84 -22.00 9.50 55.43 0.53 -21.48 16 22 Si 0.92 18.97 29.54 -169.99 -5.02 13.95 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C 0.42 10.21 2.81 37.16 0.10 10.32 16 27 F -0.21 -4.89 16.94 2.25 0.04 -4.86 16 28 F -0.14 -3.62 12.91 2.25 0.03 -3.59 16 29 F -0.22 -5.35 15.67 2.25 0.04 -5.32 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.42 3.95 6.70 -182.59 -1.22 2.73 16 38 H 0.44 6.66 8.10 -182.60 -1.48 5.18 16 39 H 0.39 5.96 6.46 -40.82 -0.26 5.70 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -31.64 345.55 -7.04 -38.68 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.58 Total: 9.17 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: -1.12 Total: 20.93 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.60 Total: -49.25 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.23 Total: -24.92 kcal Atomic # 9 Polarization: -13.87 SS G_CDS: 0.10 Total: -13.77 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.64 -7.04 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.016 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds