Wall clock time and date at job start Tue Mar 31 2020 23:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.86896 * 2 1 4 4 O 1.43741 * 110.00158 * 238.91007 * 2 1 3 5 5 C 1.44371 * 106.97882 * 267.01947 * 4 2 1 6 6 C 1.55227 * 103.56763 * 320.01497 * 5 4 2 7 7 C 1.54094 * 109.87538 * 121.00683 * 2 1 3 8 8 H 1.08998 * 110.49070 * 358.73277 * 7 2 1 9 9 C 1.50706 * 110.48685 * 236.22294 * 7 2 1 10 10 O 1.21281 * 119.99956 * 1.84192 * 9 7 2 11 11 N 1.34775 * 120.00187 * 181.84873 * 9 7 2 12 12 N 1.40095 * 120.00122 * 179.97438 * 11 9 7 13 13 C 1.34779 * 120.00016 * 179.97438 * 12 11 9 14 14 O 1.21583 * 119.99972 * 180.02562 * 13 12 11 15 15 N 1.34775 * 120.00127 * 0.02562 * 13 12 11 16 16 C 1.46498 * 120.00358 * 179.97438 * 15 13 12 17 17 H 1.09006 * 109.46924 * 325.00090 * 16 15 13 18 18 C 1.50698 * 109.47579 * 205.00216 * 16 15 13 19 19 H 1.08007 * 119.99746 * 359.97438 * 18 16 15 20 20 C 1.37870 * 120.00153 * 180.02562 * 18 16 15 21 21 N 1.31515 * 120.00388 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99851 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47237 * 60.00443 * 22 20 18 24 24 H 1.48507 * 109.46968 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47424 * 300.00141 * 22 20 18 26 26 C 1.52996 * 109.46880 * 84.99947 * 16 15 13 27 27 F 1.39906 * 109.47363 * 60.00359 * 26 16 15 28 28 F 1.39904 * 109.47245 * 180.02562 * 26 16 15 29 29 F 1.39899 * 109.47328 * 300.00155 * 26 16 15 30 30 H 1.09000 * 109.47613 * 298.99652 * 1 2 3 31 31 H 1.09003 * 109.46905 * 58.99636 * 1 2 3 32 32 H 1.08995 * 109.46931 * 178.99142 * 1 2 3 33 33 H 1.09002 * 110.61886 * 78.44181 * 5 4 2 34 34 H 1.09000 * 110.62282 * 201.28448 * 5 4 2 35 35 H 1.08999 * 110.89081 * 278.74619 * 6 5 4 36 36 H 1.08993 * 111.02521 * 155.06818 * 6 5 4 37 37 H 0.97009 * 119.99584 * 359.97438 * 11 9 7 38 38 H 0.97000 * 119.99944 * 0.02562 * 12 11 9 39 39 H 0.97000 * 119.99561 * 0.02562 * 15 13 12 40 40 H 0.96992 * 120.00306 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6975 -1.1567 5 6 2.2334 -2.0702 -0.7629 6 6 2.8350 -1.9513 0.6631 7 6 2.0540 -0.7465 1.2421 8 1 1.2237 -1.0908 1.8587 9 6 2.9714 0.1412 2.0430 10 8 3.1719 1.2835 1.6883 11 7 3.5691 -0.3344 3.1534 12 7 4.4224 0.4907 3.8977 13 6 5.0197 0.0153 5.0084 14 8 5.7599 0.7314 5.6545 15 7 4.7966 -1.2540 5.4028 16 6 5.4463 -1.7710 6.6098 17 1 6.4418 -1.3364 6.7011 18 6 5.5596 -3.2708 6.5163 19 1 5.1848 -3.7873 5.6449 20 6 6.1409 -3.9836 7.5433 21 7 6.5969 -3.3547 8.6045 22 14 6.2807 -5.8428 7.4276 23 1 7.0902 -6.2052 6.2365 24 1 6.9394 -6.3668 8.6511 25 1 4.9244 -6.4344 7.3029 26 6 4.6125 -1.3981 7.8373 27 9 3.3348 -1.9559 7.7202 28 9 5.2332 -1.8913 8.9900 29 9 4.5074 -0.0058 7.9242 30 1 -0.3634 0.4982 0.8988 31 1 -0.3633 0.5294 -0.8809 32 1 -0.3633 -1.0275 -0.0181 33 1 1.2878 -2.6116 -0.7347 34 1 2.9346 -2.5598 -1.4387 35 1 3.9028 -1.7372 0.6179 36 1 2.6448 -2.8536 1.2443 37 1 3.4085 -1.2480 3.4373 38 1 4.5827 1.4043 3.6140 39 1 4.2064 -1.8254 4.8871 40 1 7.0055 -3.8562 9.3272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209329621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:38 Heat of formation + Delta-G solvation = -232.755732 kcal Electronic energy + Delta-G solvation = -30928.172203 eV Core-core repulsion = 25943.479537 eV Total energy + Delta-G solvation = -4984.692666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.39948 -48.03413 -47.70910 -41.93867 -40.99341 -39.54020 -36.90375 -36.63633 -34.42044 -33.88517 -32.31689 -31.62280 -30.02911 -27.71895 -26.58664 -24.02718 -23.76201 -22.72801 -22.05256 -21.53831 -20.52524 -19.14428 -18.98307 -18.76099 -18.62192 -18.11667 -17.34912 -17.22467 -16.84326 -16.65119 -16.44727 -16.17752 -15.84070 -15.49344 -15.12373 -14.97397 -14.89346 -14.56433 -14.44044 -14.27234 -14.24934 -14.01610 -13.87834 -13.71158 -13.18686 -13.07035 -12.84901 -12.82946 -12.60396 -12.51881 -12.39064 -12.23544 -11.94364 -11.82327 -11.74296 -11.61417 -11.15334 -10.66645 -10.58676 -10.29888 -9.46728 -8.19058 -6.50759 0.69193 1.26866 1.51495 1.53240 1.61677 1.86650 1.95432 2.40129 2.55115 2.88596 2.96981 3.16644 3.40935 3.71932 3.77083 3.83272 3.91411 4.11802 4.19025 4.23931 4.31076 4.45936 4.63029 4.71236 4.80175 4.87853 4.96029 5.06240 5.17534 5.24507 5.25332 5.31495 5.39461 5.64879 5.71272 5.97162 6.18494 6.52194 6.61414 7.13779 7.21520 7.35850 8.73418 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003275 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.677493 B = 8547.652401 C = 9654.173614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.078 3.922 3 H 0.088 0.912 4 O -0.395 6.395 5 C 0.041 3.959 6 C -0.147 4.147 7 C -0.124 4.124 8 H 0.153 0.847 9 C 0.526 3.474 10 O -0.569 6.569 11 N -0.511 5.511 12 N -0.531 5.531 13 C 0.708 3.292 14 O -0.606 6.606 15 N -0.710 5.710 16 C 0.269 3.731 17 H 0.051 0.949 18 C -0.560 4.560 19 H 0.100 0.900 20 C 0.016 3.984 21 N -0.875 5.875 22 Si 0.984 3.016 23 H -0.262 1.262 24 H -0.290 1.290 25 H -0.262 1.262 26 C 0.411 3.589 27 F -0.201 7.201 28 F -0.150 7.150 29 F -0.220 7.220 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.435 0.565 38 H 0.440 0.560 39 H 0.408 0.592 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 -3.198 -15.215 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 H 0.106 0.894 4 O -0.315 6.315 5 C -0.035 4.035 6 C -0.185 4.185 7 C -0.147 4.147 8 H 0.170 0.830 9 C 0.313 3.687 10 O -0.447 6.447 11 N -0.263 5.263 12 N -0.286 5.286 13 C 0.407 3.593 14 O -0.482 6.482 15 N -0.367 5.367 16 C 0.161 3.839 17 H 0.069 0.931 18 C -0.597 4.597 19 H 0.118 0.882 20 C -0.189 4.189 21 N -0.509 5.509 22 Si 0.807 3.193 23 H -0.186 1.186 24 H -0.216 1.216 25 H -0.187 1.187 26 C 0.355 3.645 27 F -0.183 7.183 28 F -0.131 7.131 29 F -0.202 7.202 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.279 0.721 38 H 0.285 0.715 39 H 0.245 0.755 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.242 -1.939 -14.880 18.750 hybrid contribution -0.027 -0.540 0.729 0.907 sum -11.269 -2.479 -14.151 18.259 Atomic orbital electron populations 1.22242 0.93122 1.03723 1.03136 1.22753 0.95326 0.97015 0.82911 0.89408 1.88934 1.86284 1.22522 1.33755 1.23828 1.01452 0.83394 0.94831 1.23353 1.00065 0.97562 0.97534 1.22838 0.98733 0.95759 0.97352 0.82952 1.21196 0.80246 0.88404 0.78829 1.90723 1.63969 1.20607 1.69352 1.44982 1.43719 1.13366 1.24281 1.44407 1.46518 1.13949 1.23770 1.15898 0.80450 0.82900 0.80030 1.91006 1.42641 1.58791 1.55754 1.44937 1.51670 1.11046 1.29002 1.19309 0.90581 0.96824 0.77163 0.93111 1.21184 1.43223 0.88162 1.07121 0.88188 1.25991 0.94096 1.04832 0.94025 1.70525 1.35231 1.37699 1.07421 0.85200 0.79002 0.77347 0.77724 1.18644 1.21590 1.18660 1.23366 0.79153 0.72190 0.89833 1.92989 1.43187 1.85582 1.96518 1.93385 1.80994 1.86116 1.52633 1.93072 1.96442 1.33599 1.97099 0.90618 0.91905 0.90411 0.89563 0.87787 0.90914 0.85336 0.72093 0.71490 0.75475 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.31 71.98 0.67 -1.33 16 2 C 0.08 1.34 3.70 30.97 0.11 1.46 16 3 H 0.09 2.04 6.44 -2.39 -0.02 2.02 16 4 O -0.40 -7.61 11.20 -148.98 -1.67 -9.28 16 5 C 0.04 0.45 7.67 72.75 0.56 1.01 16 6 C -0.15 -1.48 6.69 31.98 0.21 -1.26 16 7 C -0.12 -1.64 3.06 -10.55 -0.03 -1.67 16 8 H 0.15 1.03 7.70 -2.39 -0.02 1.01 16 9 C 0.53 11.18 7.15 87.66 0.63 11.80 16 10 O -0.57 -16.79 15.10 -3.03 -0.05 -16.84 16 11 N -0.51 -10.84 6.22 -173.53 -1.08 -11.92 16 12 N -0.53 -15.75 6.26 -184.75 -1.16 -16.91 16 13 C 0.71 26.94 8.21 179.05 1.47 28.41 16 14 O -0.61 -28.80 15.75 -3.98 -0.06 -28.86 16 15 N -0.71 -26.00 4.95 -461.42 -2.28 -28.29 16 16 C 0.27 12.58 2.21 44.24 0.10 12.67 16 17 H 0.05 2.78 7.58 -2.38 -0.02 2.76 16 18 C -0.56 -25.81 8.46 25.60 0.22 -25.60 16 19 H 0.10 4.04 7.74 -2.91 -0.02 4.01 16 20 C 0.02 0.78 5.20 84.65 0.44 1.22 16 21 N -0.87 -46.35 9.50 21.44 0.20 -46.15 16 22 Si 0.98 37.57 29.54 68.60 2.03 39.59 16 23 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 26 C 0.41 20.23 2.81 71.98 0.20 20.44 16 27 F -0.20 -9.13 16.94 44.97 0.76 -8.37 16 28 F -0.15 -8.13 12.91 44.97 0.58 -7.55 16 29 F -0.22 -11.03 15.67 44.97 0.70 -10.32 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 33 H 0.09 0.59 8.13 -2.39 -0.02 0.57 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.96 7.86 -2.39 -0.02 0.95 16 36 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.43 6.77 6.70 -213.31 -1.43 5.34 16 38 H 0.44 13.35 8.10 -213.32 -1.73 11.62 16 39 H 0.41 11.47 6.46 -92.71 -0.60 10.88 16 40 H 0.27 13.61 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -70.21 345.55 -0.06 -70.26 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -2.62 Total: 27.48 kcal Atomic # 6 Polarization: 42.57 SS G_CDS: 4.58 Total: 47.15 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.32 Total: -103.27 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -1.78 Total: -54.98 kcal Atomic # 9 Polarization: -28.29 SS G_CDS: 2.05 Total: -26.24 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.59 kcal Total: -70.21 -0.06 -70.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209329621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.491 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds