Wall clock time and date at job start Tue Mar 31 2020 23:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21561 * 120.00125 * 180.02562 * 6 5 4 8 8 C 1.47756 * 119.99847 * 0.02890 * 6 5 4 9 9 C 1.39348 * 124.11648 * 179.97438 * 8 6 5 10 10 N 1.30089 * 112.14749 * 179.97438 * 9 8 6 11 11 S 1.55928 * 108.75171 * 0.02562 * 10 9 8 12 12 N 1.31486 * 124.11665 * 359.69570 * 8 6 5 13 13 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 14 14 C 1.54914 * 104.82992 * 24.12623 * 13 5 4 15 15 H 1.09000 * 111.00339 * 81.07133 * 14 13 5 16 16 N 1.46906 * 111.00138 * 204.91985 * 14 13 5 17 17 C 1.46904 * 110.99383 * 273.54550 * 16 14 13 18 18 C 1.50709 * 109.46565 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99695 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00208 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00273 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99874 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46942 * 89.99865 * 25 23 21 27 27 H 1.48500 * 109.47002 * 209.99987 * 25 23 21 28 28 H 1.48498 * 109.47222 * 329.99816 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.08007 * 123.92657 * 359.94204 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 13 5 4 36 36 H 1.09003 * 110.36599 * 265.28903 * 13 5 4 37 37 H 1.00894 * 111.00184 * 37.50009 * 16 14 13 38 38 H 1.08990 * 109.47445 * 299.99831 * 17 16 14 39 39 H 1.09000 * 109.47295 * 60.00909 * 17 16 14 40 40 H 0.96996 * 119.99820 * 0.02562 * 20 18 17 41 41 H 0.97001 * 120.00535 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9352 -2.9693 -1.0010 8 6 3.6518 -2.5978 -2.9172 9 6 4.3611 -3.4391 -3.7721 10 7 3.8640 -3.4490 -4.9742 11 16 2.6317 -2.4945 -5.0149 12 7 2.6439 -2.0171 -3.5302 13 6 3.4656 -1.2541 0.6849 14 6 2.0831 -0.7972 1.2139 15 1 1.4480 -1.6542 1.4382 16 7 2.2298 0.0691 2.3912 17 6 2.3155 -0.7267 3.6229 18 6 2.4644 0.1942 4.8066 19 8 2.4965 1.3952 4.6403 20 7 2.5629 -0.3169 6.0498 21 6 2.6989 0.5209 7.1265 22 1 2.7266 1.5903 6.9785 23 6 2.7999 -0.0059 8.4082 24 7 2.9297 0.7970 9.4403 25 14 2.7512 -1.8557 8.6643 26 1 4.1310 -2.4009 8.5997 27 1 2.1620 -2.1560 9.9939 28 1 1.9219 -2.4807 7.6028 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 5.2238 -4.0155 -3.4718 35 1 3.7975 -2.1479 1.2131 36 1 4.1973 -0.4537 0.7952 37 1 3.0304 0.6758 2.2962 38 1 1.4080 -1.3197 3.7363 39 1 3.1786 -1.3902 3.5676 40 1 2.5384 -1.2774 6.1827 41 1 3.0006 0.4293 10.3351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214219787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:22 Heat of formation + Delta-G solvation = 8.659908 kcal Electronic energy + Delta-G solvation = -26361.878951 eV Core-core repulsion = 22404.557214 eV Total energy + Delta-G solvation = -3957.321736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62479 -40.03966 -38.59729 -37.93489 -35.02575 -34.10854 -33.76874 -32.66974 -31.67429 -29.47341 -27.90741 -26.59595 -26.36547 -24.22278 -23.21522 -21.98258 -20.74488 -20.01782 -19.83478 -19.37546 -18.38640 -17.58859 -16.91822 -16.44397 -16.05759 -15.93875 -15.46421 -15.28405 -14.83824 -14.63450 -14.32062 -13.77941 -13.59494 -13.42883 -13.22070 -13.06931 -12.71669 -12.54662 -12.50141 -12.27497 -12.09897 -11.83494 -11.80816 -11.68610 -11.59042 -11.32763 -11.16145 -11.07696 -10.79450 -10.60293 -10.44831 -9.98784 -9.71872 -9.58943 -9.01981 -8.63888 -8.26518 -8.18860 -6.32394 -3.84013 -0.06291 0.89403 1.07725 1.13238 2.48028 2.69450 3.02079 3.06397 3.14815 3.71087 3.81628 3.98915 4.09362 4.13478 4.32631 4.48538 4.63146 4.71355 4.85254 4.99495 5.00334 5.04717 5.20012 5.29860 5.40791 5.49042 5.54227 5.60988 5.64071 5.74722 5.76866 5.81836 5.89603 5.98828 6.07216 6.17485 6.97375 7.03264 7.42877 7.56168 7.62233 8.12588 8.57666 8.93282 9.40685 9.80060 10.80580 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023946 B = 0.002109 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.017833 B =13275.420117 C =13991.600494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.615 3.385 7 O -0.524 6.524 8 C 0.016 3.984 9 C 0.091 3.909 10 N -0.577 5.577 11 S 0.714 5.286 12 N -0.540 5.540 13 C 0.074 3.926 14 C 0.081 3.919 15 H 0.096 0.904 16 N -0.648 5.648 17 C 0.045 3.955 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.215 0.785 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.354 0.646 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.371 0.629 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 -9.632 -29.366 31.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.009 4.009 5 N -0.327 5.327 6 C 0.397 3.603 7 O -0.400 6.400 8 C -0.159 4.159 9 C -0.103 4.103 10 N -0.418 5.418 11 S 0.756 5.244 12 N -0.390 5.390 13 C -0.051 4.051 14 C -0.031 4.031 15 H 0.114 0.886 16 N -0.280 5.280 17 C -0.088 4.088 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.175 0.825 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.203 0.797 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.278 -8.541 -30.535 31.995 hybrid contribution 2.040 -2.303 1.662 3.497 sum -2.238 -10.844 -28.873 30.923 Atomic orbital electron populations 1.21661 0.93126 1.01906 1.02545 1.22313 0.97094 0.99771 0.92228 0.88964 1.22301 0.87027 0.94764 0.96827 1.48090 1.30118 1.43073 1.11382 1.16363 0.82169 0.79357 0.82366 1.90861 1.28421 1.48822 1.71856 1.22431 0.94449 1.00491 0.98524 1.23785 1.01986 0.98754 0.85742 1.72274 1.17026 1.26013 1.26474 1.79164 1.18907 1.21286 1.05081 1.72687 1.24099 1.28264 1.13907 1.23303 0.99646 1.01994 0.80107 1.22982 0.93888 0.95607 0.90632 0.88558 1.60139 1.49100 1.19471 0.99273 1.21791 1.01512 0.95378 0.90109 1.19653 0.84132 0.89171 0.83544 1.90571 1.54088 1.15178 1.84837 1.42203 1.66289 1.08014 1.06363 1.19425 1.47356 0.93252 0.83358 0.86254 1.25047 0.97591 0.98314 0.95221 1.69617 1.48701 1.34762 0.98946 0.86673 0.78868 0.85162 0.78696 1.19625 1.20163 1.19457 0.92860 0.90919 0.92608 0.90739 0.90428 0.76891 0.89848 0.90552 0.82465 0.89248 0.93418 0.79666 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.14 37.15 0.34 -0.79 16 2 C -0.09 -0.86 3.26 -88.65 -0.29 -1.15 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.11 0.99 5.08 -3.07 -0.02 0.97 16 5 N -0.59 -6.26 3.33 -171.66 -0.57 -6.83 16 6 C 0.62 7.09 7.85 -12.37 -0.10 6.99 16 7 O -0.52 -7.41 17.06 5.31 0.09 -7.32 16 8 C 0.02 0.15 6.71 -83.71 -0.56 -0.41 16 9 C 0.09 0.75 11.22 -17.88 -0.20 0.55 16 10 N -0.58 -4.59 11.41 19.43 0.22 -4.37 16 11 S 0.71 4.10 23.69 -107.50 -2.55 1.55 16 12 N -0.54 -4.33 8.64 23.17 0.20 -4.13 16 13 C 0.07 0.80 6.49 -2.53 -0.02 0.78 16 14 C 0.08 0.85 2.77 -65.42 -0.18 0.67 16 15 H 0.10 0.98 7.82 -51.93 -0.41 0.58 16 16 N -0.65 -8.99 6.00 -105.57 -0.63 -9.62 16 17 C 0.04 0.69 6.04 -4.97 -0.03 0.66 16 18 C 0.45 9.85 7.82 -10.98 -0.09 9.76 16 19 O -0.56 -14.72 15.78 5.55 0.09 -14.64 16 20 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 21 C -0.31 -8.54 10.16 -14.94 -0.15 -8.70 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 25 Si 0.88 19.24 27.74 -169.99 -4.71 14.52 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 29 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.08 0.65 7.23 -51.93 -0.38 0.27 16 34 H 0.21 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 36 H 0.08 0.84 7.80 -51.93 -0.41 0.43 16 37 H 0.35 5.14 8.00 -39.30 -0.31 4.83 16 38 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -34.14 360.37 -8.17 -42.31 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.07 Total: 11.36 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -1.39 Total: 10.36 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.06 Total: -63.58 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.18 Total: -21.96 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -2.55 Total: 1.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.14 -8.17 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214219787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.967 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds