Wall clock time and date at job start Tue Mar 31 2020 23:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21561 * 120.00125 * 180.02562 * 6 5 4 8 8 C 1.47756 * 119.99847 * 0.02890 * 6 5 4 9 9 C 1.39348 * 124.11648 * 179.97438 * 8 6 5 10 10 N 1.30089 * 112.14749 * 179.97438 * 9 8 6 11 11 S 1.55928 * 108.75171 * 0.02562 * 10 9 8 12 12 N 1.31486 * 124.11665 * 359.69570 * 8 6 5 13 13 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 14 14 C 1.54914 * 104.82992 * 24.12623 * 13 5 4 15 15 H 1.09000 * 111.00339 * 81.07133 * 14 13 5 16 16 N 1.46906 * 111.00138 * 204.91985 * 14 13 5 17 17 C 1.46904 * 110.99383 * 273.54550 * 16 14 13 18 18 C 1.50709 * 109.46565 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99695 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00208 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00273 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99874 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46942 * 89.99865 * 25 23 21 27 27 H 1.48500 * 109.47002 * 209.99987 * 25 23 21 28 28 H 1.48498 * 109.47222 * 329.99816 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.08007 * 123.92657 * 359.94204 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 13 5 4 36 36 H 1.09003 * 110.36599 * 265.28903 * 13 5 4 37 37 H 1.00894 * 111.00184 * 37.50009 * 16 14 13 38 38 H 1.08990 * 109.47445 * 299.99831 * 17 16 14 39 39 H 1.09000 * 109.47295 * 60.00909 * 17 16 14 40 40 H 0.96996 * 119.99820 * 0.02562 * 20 18 17 41 41 H 0.97001 * 120.00535 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9352 -2.9693 -1.0010 8 6 3.6518 -2.5978 -2.9172 9 6 4.3611 -3.4391 -3.7721 10 7 3.8640 -3.4490 -4.9742 11 16 2.6317 -2.4945 -5.0149 12 7 2.6439 -2.0171 -3.5302 13 6 3.4656 -1.2541 0.6849 14 6 2.0831 -0.7972 1.2139 15 1 1.4480 -1.6542 1.4382 16 7 2.2298 0.0691 2.3912 17 6 2.3155 -0.7267 3.6229 18 6 2.4644 0.1942 4.8066 19 8 2.4965 1.3952 4.6403 20 7 2.5629 -0.3169 6.0498 21 6 2.6989 0.5209 7.1265 22 1 2.7266 1.5903 6.9785 23 6 2.7999 -0.0059 8.4082 24 7 2.9297 0.7970 9.4403 25 14 2.7512 -1.8557 8.6643 26 1 4.1310 -2.4009 8.5997 27 1 2.1620 -2.1560 9.9939 28 1 1.9219 -2.4807 7.6028 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 5.2238 -4.0155 -3.4718 35 1 3.7975 -2.1479 1.2131 36 1 4.1973 -0.4537 0.7952 37 1 3.0304 0.6758 2.2962 38 1 1.4080 -1.3197 3.7363 39 1 3.1786 -1.3902 3.5676 40 1 2.5384 -1.2774 6.1827 41 1 3.0006 0.4293 10.3351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214219787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:21 Heat of formation + Delta-G solvation = -19.633914 kcal Electronic energy + Delta-G solvation = -26363.105863 eV Core-core repulsion = 22404.557214 eV Total energy + Delta-G solvation = -3958.548648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28419 -40.86949 -40.19338 -38.97528 -36.28153 -35.68664 -34.63555 -33.74701 -33.45440 -30.45558 -28.78506 -27.70062 -27.27754 -25.73206 -24.13456 -22.77915 -21.63082 -21.20318 -20.74760 -20.41736 -20.18837 -18.44267 -17.87814 -17.41288 -17.22697 -16.95274 -16.60883 -16.48841 -16.02692 -15.75185 -15.47294 -15.07521 -14.84128 -14.54613 -14.36705 -14.16059 -14.08196 -13.79012 -13.38750 -13.31014 -13.17666 -12.97960 -12.86742 -12.46024 -12.40720 -12.29458 -12.24712 -12.05433 -11.97452 -11.81076 -11.57910 -11.50619 -11.24914 -10.42478 -10.28927 -10.24176 -9.82223 -9.37475 -8.40542 -6.01262 -0.66845 0.33258 0.41362 0.62049 1.31032 1.36176 1.44950 1.70924 1.90994 1.96691 2.23512 2.69191 3.15605 3.16642 3.34496 3.46296 3.59697 3.71178 3.92641 4.01600 4.15917 4.19632 4.27304 4.40880 4.46165 4.51289 4.56771 4.73238 4.75916 4.78365 4.92901 5.03181 5.14486 5.32236 5.35797 5.48714 5.53776 5.89963 6.01752 6.23397 6.29867 6.60046 6.79492 6.88960 7.40648 7.96913 8.76961 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023946 B = 0.002109 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.017833 B =13275.420117 C =13991.600494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 H 0.085 0.915 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.612 3.388 7 O -0.560 6.560 8 C -0.004 4.004 9 C 0.089 3.911 10 N -0.601 5.601 11 S 0.796 5.204 12 N -0.552 5.552 13 C 0.075 3.925 14 C 0.088 3.912 15 H 0.109 0.891 16 N -0.661 5.661 17 C 0.059 3.941 18 C 0.450 3.550 19 O -0.613 6.613 20 N -0.591 5.591 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.230 1.230 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.221 0.779 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.348 0.652 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.390 0.610 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -12.654 -31.854 34.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.396 3.604 7 O -0.438 6.438 8 C -0.176 4.176 9 C -0.103 4.103 10 N -0.443 5.443 11 S 0.838 5.162 12 N -0.404 5.404 13 C -0.049 4.049 14 C -0.023 4.023 15 H 0.127 0.873 16 N -0.292 5.292 17 C -0.073 4.073 18 C 0.238 3.762 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.153 1.153 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.237 0.763 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.168 0.832 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.225 0.775 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.515 -11.573 -33.051 35.451 hybrid contribution 2.360 -1.184 2.244 3.465 sum -3.155 -12.758 -30.807 33.493 Atomic orbital electron populations 1.21619 0.92248 1.02426 1.02469 1.22280 0.97700 0.99260 0.91666 0.89686 1.22309 0.86528 0.94703 0.96517 1.48157 1.30411 1.42912 1.11200 1.16646 0.81654 0.78849 0.83229 1.90831 1.29899 1.50236 1.72850 1.22067 0.95719 1.02123 0.97690 1.23810 1.02172 0.98640 0.85645 1.72172 1.18343 1.27252 1.26514 1.78870 1.16356 1.18420 1.02583 1.72474 1.23952 1.28585 1.15426 1.23216 0.99591 1.01550 0.80579 1.22990 0.93973 0.95652 0.89714 0.87320 1.60152 1.49006 1.20141 0.99870 1.21717 1.04084 0.94042 0.87484 1.20941 0.81115 0.89525 0.84661 1.90551 1.55349 1.18034 1.85781 1.42038 1.67125 1.08385 1.05772 1.18999 1.49446 0.91428 0.85744 0.92570 1.26115 0.96156 1.05217 0.93993 1.69800 1.49844 1.38062 0.99789 0.85380 0.80039 0.76619 0.79588 1.18332 1.20101 1.15306 0.91883 0.92734 0.91095 0.90271 0.89449 0.76288 0.90329 0.91171 0.83195 0.86426 0.90499 0.77488 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.14 71.98 0.66 -1.22 16 2 C -0.09 -1.45 3.26 -9.52 -0.03 -1.49 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.12 1.85 5.08 86.73 0.44 2.29 16 5 N -0.60 -11.69 3.33 -815.28 -2.71 -14.40 16 6 C 0.61 13.58 7.85 86.76 0.68 14.26 16 7 O -0.56 -15.75 17.06 -3.91 -0.07 -15.82 16 8 C 0.00 -0.06 6.71 41.98 0.28 0.22 16 9 C 0.09 1.34 11.22 85.22 0.96 2.30 16 10 N -0.60 -8.31 11.41 -92.46 -1.05 -9.36 16 11 S 0.80 6.89 23.69 -56.49 -1.34 5.55 16 12 N -0.55 -7.53 8.64 -80.60 -0.70 -8.23 16 13 C 0.08 1.52 6.49 86.86 0.56 2.09 16 14 C 0.09 1.67 2.77 46.40 0.13 1.80 16 15 H 0.11 1.85 7.82 -2.39 -0.02 1.84 16 16 N -0.66 -17.42 6.00 -487.92 -2.93 -20.34 16 17 C 0.06 1.67 6.04 85.56 0.52 2.19 16 18 C 0.45 19.65 7.82 87.66 0.69 20.34 16 19 O -0.61 -33.11 15.78 -3.06 -0.05 -33.15 16 20 N -0.59 -27.42 5.09 -306.98 -1.56 -28.98 16 21 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 22 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 24 N -0.93 -56.32 13.96 21.66 0.30 -56.02 16 25 Si 0.96 38.68 27.74 68.60 1.90 40.59 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.70 6.52 99.48 0.65 -7.06 16 29 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.16 7.70 -2.39 -0.02 1.14 16 33 H 0.09 1.20 7.23 -2.39 -0.02 1.18 16 34 H 0.22 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 37 H 0.35 10.00 8.00 -89.70 -0.72 9.29 16 38 H 0.12 2.77 8.09 -2.39 -0.02 2.75 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 41 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.58 360.37 -2.21 -81.79 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.21 Total: 34.21 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.20 Total: 24.18 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -8.65 Total: -137.34 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.11 Total: -48.97 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.59 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.34 Total: 5.55 kcal Total: -79.58 -2.21 -81.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214219787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.159 kcal (2) G-P(sol) polarization free energy of solvation -79.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds