Wall clock time and date at job start Tue Mar 31 2020 23:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21598 * 120.00310 * 180.02562 * 6 5 4 8 8 C 1.47451 * 119.99700 * 0.03029 * 6 5 4 9 9 C 1.37984 * 124.15044 * 179.97438 * 8 6 5 10 10 S 1.72109 * 104.03126 * 179.97438 * 9 8 6 11 11 N 1.56407 * 96.15158 * 0.02562 * 10 9 8 12 12 N 1.27419 * 109.87536 * 359.74516 * 11 10 9 13 13 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 14 14 C 1.54914 * 104.82992 * 24.12623 * 13 5 4 15 15 H 1.09000 * 111.00339 * 81.07133 * 14 13 5 16 16 N 1.46906 * 111.00138 * 204.91985 * 14 13 5 17 17 C 1.46904 * 110.99383 * 273.54550 * 16 14 13 18 18 C 1.50709 * 109.46565 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99695 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00208 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99923 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00335 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46855 * 90.00077 * 25 23 21 27 27 H 1.48493 * 109.47107 * 210.00196 * 25 23 21 28 28 H 1.48499 * 109.46676 * 330.00462 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.08003 * 127.98607 * 359.95547 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 13 5 4 36 36 H 1.09003 * 110.36599 * 265.28903 * 13 5 4 37 37 H 1.00894 * 111.00184 * 37.50009 * 16 14 13 38 38 H 1.08990 * 109.47445 * 299.99831 * 17 16 14 39 39 H 1.09000 * 109.47295 * 60.00909 * 17 16 14 40 40 H 0.96996 * 119.99820 * 0.02562 * 20 18 17 41 41 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9355 -2.9695 -1.0008 8 6 3.6525 -2.5974 -2.9143 9 6 4.3544 -3.4302 -3.7615 10 16 3.5312 -3.2848 -5.2660 11 7 2.4503 -2.2698 -4.7682 12 7 2.6348 -2.0108 -3.5344 13 6 3.4656 -1.2541 0.6849 14 6 2.0831 -0.7972 1.2139 15 1 1.4480 -1.6542 1.4382 16 7 2.2298 0.0691 2.3912 17 6 2.3155 -0.7267 3.6229 18 6 2.4644 0.1942 4.8066 19 8 2.4965 1.3952 4.6403 20 7 2.5629 -0.3169 6.0498 21 6 2.6989 0.5209 7.1265 22 1 2.7266 1.5903 6.9785 23 6 2.7999 -0.0059 8.4082 24 7 2.7656 -1.3073 8.5884 25 14 2.9844 1.1355 9.8754 26 1 1.6406 1.4929 10.3966 27 1 3.7624 0.4519 10.9396 28 1 3.6970 2.3691 9.4562 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 5.2205 -4.0336 -3.5333 35 1 3.7975 -2.1479 1.2131 36 1 4.1973 -0.4537 0.7952 37 1 3.0304 0.6758 2.2962 38 1 1.4080 -1.3197 3.7363 39 1 3.1786 -1.3902 3.5676 40 1 2.5384 -1.2774 6.1827 41 1 2.8366 -1.6750 9.4832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215254714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:33 Heat of formation + Delta-G solvation = 13.715890 kcal Electronic energy + Delta-G solvation = -26280.469904 eV Core-core repulsion = 22323.367412 eV Total energy + Delta-G solvation = -3957.102492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56976 -40.05422 -38.50905 -37.84691 -34.80807 -33.81886 -32.71631 -32.49291 -31.22005 -29.32715 -27.51158 -26.61762 -26.26154 -24.46604 -23.45862 -21.96003 -20.87661 -20.56930 -19.25547 -18.94421 -17.89979 -16.97498 -16.78851 -16.48595 -16.07138 -15.89296 -15.39830 -15.16482 -14.63298 -14.48919 -14.22057 -13.83312 -13.63611 -13.35180 -13.28058 -13.12731 -12.89115 -12.54072 -12.32578 -12.23199 -12.15236 -11.67746 -11.52901 -11.32438 -11.11127 -11.01619 -10.79052 -10.61802 -10.55696 -10.49925 -10.39329 -10.38451 -10.21735 -9.51218 -8.96336 -8.49206 -8.12724 -7.96538 -6.41775 -3.82660 -0.42051 0.43077 1.01718 1.05601 2.55069 2.75545 3.18171 3.26899 3.32593 3.35532 3.89689 4.01501 4.14934 4.26050 4.26976 4.44356 4.58181 4.83372 4.85639 5.05966 5.12784 5.16879 5.25869 5.39616 5.51594 5.61006 5.65397 5.74575 5.77652 5.89365 5.93400 5.97169 6.14561 6.24750 6.28956 6.98378 7.11853 7.12681 7.54719 7.55346 7.68542 8.05758 8.60573 9.17567 9.53770 10.04827 10.75853 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.001946 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.008137 B =14386.824393 C =15045.648076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.092 0.908 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.614 3.386 7 O -0.526 6.526 8 C -0.018 4.018 9 C -0.236 4.236 10 S 0.461 5.539 11 N -0.291 5.291 12 N -0.205 5.205 13 C 0.074 3.926 14 C 0.081 3.919 15 H 0.096 0.904 16 N -0.648 5.648 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.353 0.647 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.392 0.608 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 -7.356 -27.975 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.110 0.890 4 C -0.013 4.013 5 N -0.327 5.327 6 C 0.398 3.602 7 O -0.402 6.402 8 C -0.165 4.165 9 C -0.393 4.393 10 S 0.597 5.403 11 N -0.271 5.271 12 N -0.076 5.076 13 C -0.051 4.051 14 C -0.031 4.031 15 H 0.115 0.885 16 N -0.280 5.280 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.226 0.774 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.226 0.774 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.001 -6.413 -29.005 29.723 hybrid contribution 1.865 -0.763 2.108 2.917 sum 0.864 -7.175 -26.897 27.851 Atomic orbital electron populations 1.21661 0.93126 1.01959 1.02506 1.22299 0.97112 0.99714 0.92191 0.89012 1.22362 0.87014 0.94911 0.96988 1.48129 1.30100 1.43002 1.11471 1.16254 0.82233 0.79409 0.82347 1.90865 1.28498 1.48931 1.71907 1.22599 0.95201 1.00210 0.98485 1.28903 1.07413 1.04246 0.98740 1.81581 1.13750 1.31811 1.13164 1.78700 1.22728 1.17059 1.08624 1.71710 1.16139 1.20027 0.99700 1.23311 0.99749 1.01962 0.80034 1.22983 0.93793 0.95639 0.90668 0.88549 1.60149 1.48950 1.19500 0.99353 1.21755 1.01416 0.95341 0.89985 1.19763 0.84581 0.89073 0.84002 1.90527 1.55746 1.15324 1.85161 1.41860 1.63613 1.09664 1.04794 1.19700 1.46883 0.92086 0.84206 0.87893 1.25275 0.97351 0.96331 0.99035 1.69617 1.50369 1.10667 1.23596 0.85849 0.78372 0.79758 0.80261 1.20386 1.20952 1.19420 0.92817 0.90976 0.92558 0.90575 0.90243 0.77399 0.89863 0.90621 0.82659 0.89370 0.93577 0.77437 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.14 37.15 0.34 -0.95 16 2 C -0.09 -0.96 3.26 -88.65 -0.29 -1.25 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 1.10 5.08 -3.07 -0.02 1.09 16 5 N -0.59 -6.95 3.33 -171.77 -0.57 -7.52 16 6 C 0.61 7.72 7.84 -12.51 -0.10 7.62 16 7 O -0.53 -7.98 17.05 5.28 0.09 -7.89 16 8 C -0.02 -0.18 6.76 -83.78 -0.57 -0.75 16 9 C -0.24 -1.63 11.21 30.64 0.34 -1.29 16 10 S 0.46 2.35 23.38 -107.50 -2.51 -0.16 16 11 N -0.29 -2.60 12.49 60.35 0.75 -1.84 16 12 N -0.21 -2.10 8.86 32.74 0.29 -1.81 16 13 C 0.07 0.88 6.49 -2.53 -0.02 0.86 16 14 C 0.08 0.95 2.77 -65.42 -0.18 0.77 16 15 H 0.10 1.11 7.82 -51.93 -0.41 0.71 16 16 N -0.65 -9.74 6.00 -105.57 -0.63 -10.38 16 17 C 0.05 0.80 6.04 -4.97 -0.03 0.77 16 18 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 19 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 20 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.05 0.49 8.13 -51.93 -0.42 0.06 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 33 H 0.08 0.79 7.22 -51.93 -0.38 0.41 16 34 H 0.21 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 36 H 0.08 0.91 7.80 -51.93 -0.41 0.51 16 37 H 0.35 5.51 8.00 -39.30 -0.31 5.19 16 38 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -33.55 364.48 -7.31 -40.86 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.11 Total: 11.68 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.84 Total: 9.01 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.51 Total: -59.56 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.51 Total: -0.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.55 -7.31 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215254714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.572 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds