Wall clock time and date at job start Tue Mar 31 2020 23:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21598 * 120.00310 * 180.02562 * 6 5 4 8 8 C 1.47451 * 119.99700 * 0.03029 * 6 5 4 9 9 C 1.37984 * 124.15044 * 179.97438 * 8 6 5 10 10 S 1.72109 * 104.03126 * 179.97438 * 9 8 6 11 11 N 1.56407 * 96.15158 * 0.02562 * 10 9 8 12 12 N 1.27419 * 109.87536 * 359.74516 * 11 10 9 13 13 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 14 14 C 1.54914 * 104.82992 * 24.12623 * 13 5 4 15 15 H 1.09000 * 111.00339 * 81.07133 * 14 13 5 16 16 N 1.46906 * 111.00138 * 204.91985 * 14 13 5 17 17 C 1.46904 * 110.99383 * 273.54550 * 16 14 13 18 18 C 1.50709 * 109.46565 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99695 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00208 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99923 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00335 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46855 * 90.00077 * 25 23 21 27 27 H 1.48493 * 109.47107 * 210.00196 * 25 23 21 28 28 H 1.48499 * 109.46676 * 330.00462 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.08003 * 127.98607 * 359.95547 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 13 5 4 36 36 H 1.09003 * 110.36599 * 265.28903 * 13 5 4 37 37 H 1.00894 * 111.00184 * 37.50009 * 16 14 13 38 38 H 1.08990 * 109.47445 * 299.99831 * 17 16 14 39 39 H 1.09000 * 109.47295 * 60.00909 * 17 16 14 40 40 H 0.96996 * 119.99820 * 0.02562 * 20 18 17 41 41 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9355 -2.9695 -1.0008 8 6 3.6525 -2.5974 -2.9143 9 6 4.3544 -3.4302 -3.7615 10 16 3.5312 -3.2848 -5.2660 11 7 2.4503 -2.2698 -4.7682 12 7 2.6348 -2.0108 -3.5344 13 6 3.4656 -1.2541 0.6849 14 6 2.0831 -0.7972 1.2139 15 1 1.4480 -1.6542 1.4382 16 7 2.2298 0.0691 2.3912 17 6 2.3155 -0.7267 3.6229 18 6 2.4644 0.1942 4.8066 19 8 2.4965 1.3952 4.6403 20 7 2.5629 -0.3169 6.0498 21 6 2.6989 0.5209 7.1265 22 1 2.7266 1.5903 6.9785 23 6 2.7999 -0.0059 8.4082 24 7 2.7656 -1.3073 8.5884 25 14 2.9844 1.1355 9.8754 26 1 1.6406 1.4929 10.3966 27 1 3.7624 0.4519 10.9396 28 1 3.6970 2.3691 9.4562 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 5.2205 -4.0336 -3.5333 35 1 3.7975 -2.1479 1.2131 36 1 4.1973 -0.4537 0.7952 37 1 3.0304 0.6758 2.2962 38 1 1.4080 -1.3197 3.7363 39 1 3.1786 -1.3902 3.5676 40 1 2.5384 -1.2774 6.1827 41 1 2.8366 -1.6750 9.4832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215254714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:32 Heat of formation + Delta-G solvation = -12.612331 kcal Electronic energy + Delta-G solvation = -26281.611582 eV Core-core repulsion = 22323.367412 eV Total energy + Delta-G solvation = -3958.244170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27186 -40.95466 -40.10897 -39.07703 -36.23925 -35.59252 -33.64830 -33.23092 -33.18466 -30.39078 -28.39984 -27.62321 -27.40849 -26.01104 -24.52487 -22.84003 -21.67793 -21.49515 -20.93759 -19.91701 -19.75208 -17.94018 -17.81667 -17.29752 -17.27109 -16.86118 -16.64189 -16.36446 -16.05053 -15.87096 -15.49846 -15.33396 -14.81757 -14.43645 -14.30543 -14.17068 -13.86593 -13.65251 -13.49199 -13.33573 -13.10992 -13.06590 -12.97277 -12.84200 -12.41302 -12.22207 -12.12337 -11.96307 -11.65983 -11.50181 -11.46048 -11.23359 -11.19976 -10.90442 -10.34100 -10.01184 -9.90118 -9.38493 -8.46233 -5.94862 -0.96552 -0.07850 0.26946 0.51950 1.38416 1.42163 1.54872 1.69356 1.89837 2.05686 2.29255 2.63109 2.88610 3.21017 3.33840 3.43324 3.60001 3.64016 3.78982 3.91221 4.16547 4.23686 4.30136 4.33638 4.41935 4.52080 4.58082 4.71584 4.73948 4.77409 4.90869 5.03715 5.13951 5.30939 5.41654 5.47118 5.86498 6.07068 6.17369 6.30889 6.38952 6.60143 6.78835 7.12970 7.56687 8.11600 8.71093 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.001946 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.008137 B =14386.824393 C =15045.648076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 H 0.088 0.912 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.611 3.389 7 O -0.562 6.562 8 C -0.044 4.044 9 C -0.238 4.238 10 S 0.567 5.433 11 N -0.330 5.330 12 N -0.224 5.224 13 C 0.076 3.924 14 C 0.088 3.912 15 H 0.104 0.896 16 N -0.656 5.656 17 C 0.062 3.938 18 C 0.439 3.561 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.226 0.774 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.348 0.652 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -8.366 -29.685 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.396 3.604 7 O -0.441 6.441 8 C -0.192 4.192 9 C -0.395 4.395 10 S 0.702 5.298 11 N -0.311 5.311 12 N -0.094 5.094 13 C -0.049 4.049 14 C -0.024 4.024 15 H 0.122 0.878 16 N -0.287 5.287 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.168 0.832 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.245 -7.435 -30.738 31.649 hybrid contribution 1.965 -0.511 2.437 3.172 sum 0.720 -7.946 -28.301 29.404 Atomic orbital electron populations 1.21622 0.92288 1.02378 1.02509 1.22265 0.97693 0.99305 0.91416 0.89383 1.22330 0.86490 0.94754 0.96655 1.48204 1.30388 1.42925 1.11245 1.16595 0.81664 0.78791 0.83352 1.90831 1.29957 1.50337 1.72932 1.22364 0.96805 1.02316 0.97727 1.29270 1.07514 1.03114 0.99565 1.81212 1.10374 1.28204 1.09999 1.78363 1.25127 1.19206 1.08390 1.71738 1.16534 1.20808 1.00298 1.23202 0.99662 1.01451 0.80554 1.22979 0.93902 0.95637 0.89851 0.87751 1.60157 1.48847 1.20002 0.99696 1.21612 1.03180 0.94159 0.88028 1.20821 0.82222 0.89435 0.84881 1.90497 1.56876 1.17514 1.85916 1.41935 1.64401 1.09578 1.05159 1.19665 1.49092 0.91579 0.85860 0.90231 1.26055 0.96438 0.97890 1.01048 1.69679 1.50243 1.11724 1.24504 0.84923 0.78578 0.77759 0.77053 1.19631 1.19636 1.19746 0.92078 0.92518 0.91098 0.90274 0.89700 0.75694 0.90666 0.90992 0.83200 0.87407 0.91578 0.76982 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.14 71.98 0.66 -1.67 16 2 C -0.09 -1.71 3.26 -9.52 -0.03 -1.74 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 2.30 5.08 86.73 0.44 2.74 16 5 N -0.60 -13.73 3.33 -815.62 -2.71 -16.44 16 6 C 0.61 15.25 7.84 86.67 0.68 15.93 16 7 O -0.56 -17.19 17.05 -4.02 -0.07 -17.26 16 8 C -0.04 -0.86 6.76 41.36 0.28 -0.58 16 9 C -0.24 -2.82 11.21 67.76 0.76 -2.06 16 10 S 0.57 4.16 23.38 -56.49 -1.32 2.84 16 11 N -0.33 -5.28 12.49 37.02 0.46 -4.82 16 12 N -0.22 -4.33 8.86 -50.34 -0.45 -4.78 16 13 C 0.08 1.80 6.49 86.86 0.56 2.36 16 14 C 0.09 1.99 2.77 46.40 0.13 2.12 16 15 H 0.10 2.24 7.82 -2.39 -0.02 2.22 16 16 N -0.66 -19.46 6.00 -487.92 -2.93 -22.39 16 17 C 0.06 2.07 6.04 85.56 0.52 2.58 16 18 C 0.44 20.61 7.82 87.66 0.69 21.29 16 19 O -0.62 -34.00 15.78 -3.06 -0.05 -34.05 16 20 N -0.57 -29.36 5.29 -306.98 -1.62 -30.99 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 24 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 25 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.50 7.69 -2.39 -0.02 1.48 16 33 H 0.08 1.57 7.22 -2.39 -0.02 1.56 16 34 H 0.23 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.07 1.90 8.04 -2.39 -0.02 1.88 16 36 H 0.07 1.75 7.80 -2.39 -0.02 1.73 16 37 H 0.35 10.94 8.00 -89.70 -0.72 10.23 16 38 H 0.11 3.20 8.09 -2.39 -0.02 3.18 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 41 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -73.78 364.48 -0.77 -74.55 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.35 Total: 35.23 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 5.96 Total: 22.56 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -6.97 Total: -129.05 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.12 Total: -51.31 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Total: -73.78 -0.77 -74.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215254714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.934 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds