Wall clock time and date at job start Tue Mar 31 2020 22:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00004 * 2 1 4 4 H 1.48506 * 109.47103 * 270.00616 * 3 2 1 5 5 H 1.48501 * 109.47193 * 30.00072 * 3 2 1 6 6 H 1.48496 * 109.47233 * 150.00407 * 3 2 1 7 7 C 1.38949 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99594 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00352 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99841 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46954 * 180.02562 * 12 10 9 14 14 C 1.48536 * 110.99521 * 190.00023 * 13 12 10 15 15 C 1.54942 * 103.22418 * 159.72350 * 14 13 12 16 16 H 1.08990 * 110.72581 * 80.94382 * 15 14 13 17 17 N 1.46503 * 110.72233 * 204.22985 * 15 14 13 18 18 C 1.34784 * 119.99686 * 273.54159 * 17 15 14 19 19 O 1.21280 * 120.00012 * 0.02562 * 18 17 15 20 20 C 1.50693 * 119.99833 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47143 * 180.02562 * 20 18 17 22 22 F 1.39909 * 109.46905 * 59.99980 * 21 20 18 23 23 F 1.39895 * 109.47006 * 179.97438 * 21 20 18 24 24 F 1.39892 * 109.47050 * 300.00247 * 21 20 18 25 25 C 1.54591 * 102.91948 * 322.58184 * 15 14 13 26 26 H 1.09003 * 110.30970 * 140.87879 * 25 15 14 27 27 O 1.42903 * 110.31340 * 263.04430 * 25 15 14 28 28 C 1.47900 * 110.99996 * 307.39556 * 13 12 10 29 29 H 0.97005 * 120.00136 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99968 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46832 * 60.00030 * 12 10 9 32 32 H 1.09001 * 109.47035 * 300.00016 * 12 10 9 33 33 H 1.09004 * 110.66813 * 278.15215 * 14 13 12 34 34 H 1.09000 * 110.66721 * 41.28713 * 14 13 12 35 35 H 0.96993 * 120.00363 * 93.54527 * 17 15 14 36 36 H 1.09003 * 109.47393 * 300.00115 * 20 18 17 37 37 H 1.08999 * 109.47446 * 60.00247 * 20 18 17 38 38 H 0.96698 * 114.00027 * 177.17281 * 27 25 15 39 39 H 1.08998 * 109.91806 * 333.51013 * 28 13 12 40 40 H 1.08995 * 109.91750 * 94.61145 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.5062 -7.2714 -0.2441 15 6 2.6479 -8.2000 -0.7287 16 1 3.2172 -8.5850 0.1172 17 7 2.1145 -9.2978 -1.5391 18 6 1.6813 -10.4265 -0.9433 19 8 1.7327 -10.5332 0.2637 20 6 1.1332 -11.5559 -1.7769 21 6 0.7147 -12.7086 -0.8620 22 9 -0.2702 -12.2645 0.0269 23 9 0.2053 -13.7568 -1.6359 24 9 1.8257 -13.1581 -0.1405 25 6 3.5184 -7.2569 -1.5904 26 1 4.5759 -7.4695 -1.4335 27 8 3.1830 -7.3969 -2.9724 28 6 3.1801 -5.8369 -1.0996 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6167 -4.9201 -0.8919 32 1 0.6174 -4.9213 0.8880 33 1 1.0671 -7.6509 0.6786 34 1 0.7453 -7.1616 -1.0168 35 1 2.0731 -9.2123 -2.5044 36 1 0.2673 -11.2057 -2.3388 37 1 1.9003 -11.9016 -2.4698 38 1 3.6672 -6.7981 -3.5573 39 1 2.7459 -5.2563 -1.9135 40 1 4.0797 -5.3442 -0.7310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219308109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:43 Heat of formation + Delta-G solvation = -288.070883 kcal Electronic energy + Delta-G solvation = -29680.627249 eV Core-core repulsion = 24693.535938 eV Total energy + Delta-G solvation = -4987.091311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.05128 -48.57660 -48.52175 -41.44084 -40.45648 -39.34968 -36.78773 -35.94231 -35.36594 -33.34356 -33.04194 -31.29319 -29.14667 -28.05850 -26.13045 -25.00180 -22.78218 -22.15074 -21.56358 -21.03025 -19.90238 -19.76667 -19.52292 -18.65615 -18.56918 -17.75080 -17.63372 -17.07616 -16.68422 -16.50908 -16.29267 -16.01276 -15.84132 -15.50013 -15.35288 -15.21180 -15.04217 -14.93423 -14.73038 -14.69373 -14.64550 -14.21184 -14.12072 -13.75287 -13.49735 -13.37464 -13.21861 -12.97683 -12.93608 -12.66027 -12.52589 -12.42465 -12.14652 -12.02083 -11.50457 -11.22296 -11.10392 -10.34056 -10.15669 -10.03025 -9.41024 -8.48054 -5.96918 1.37048 1.40978 1.41842 1.51004 1.54370 2.00355 2.01763 2.27732 2.73643 2.77381 3.06233 3.09110 3.17658 3.19835 3.28373 3.49512 3.73359 3.80450 4.04343 4.18365 4.21379 4.24600 4.29325 4.38605 4.42472 4.50866 4.65138 4.81631 4.96147 5.09341 5.26901 5.39891 5.75311 5.85918 6.02232 6.41322 6.57416 6.71944 7.10341 7.11415 7.52850 8.07285 8.69330 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.002037 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.704548 B =13740.401620 C =14169.805870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.049 3.951 13 N -0.508 5.508 14 C 0.028 3.972 15 C 0.157 3.843 16 H 0.101 0.899 17 N -0.689 5.689 18 C 0.512 3.488 19 O -0.568 6.568 20 C -0.181 4.181 21 C 0.465 3.535 22 F -0.191 7.191 23 F -0.179 7.179 24 F -0.190 7.190 25 C 0.103 3.897 26 H 0.090 0.910 27 O -0.565 6.565 28 C 0.023 3.977 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.426 0.574 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.404 0.596 39 H 0.042 0.958 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 -23.142 -10.252 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.100 0.900 9 N -0.209 5.209 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.083 4.083 13 N -0.234 5.234 14 C -0.100 4.100 15 C 0.051 3.949 16 H 0.119 0.881 17 N -0.343 5.343 18 C 0.298 3.702 19 O -0.446 6.446 20 C -0.221 4.221 21 C 0.410 3.590 22 F -0.172 7.172 23 F -0.161 7.161 24 F -0.171 7.171 25 C 0.043 3.957 26 H 0.108 0.892 27 O -0.375 6.375 28 C -0.105 4.105 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.266 0.734 36 H 0.192 0.808 37 H 0.194 0.806 38 H 0.256 0.744 39 H 0.060 0.940 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.007 -23.507 -8.660 25.072 hybrid contribution -0.430 1.492 -0.845 1.768 sum 0.577 -22.015 -9.506 23.986 Atomic orbital electron populations 1.69678 1.06895 1.29334 1.50264 1.26062 0.96534 1.02502 0.96276 0.84916 0.77860 0.76817 0.78687 1.19473 1.19757 1.19745 1.19662 0.92730 0.83808 1.49848 0.90048 1.41927 1.09332 1.04727 1.64905 1.20593 0.88296 0.85794 0.82530 1.90469 1.15289 1.87646 1.56508 1.21986 0.94273 0.88574 1.03449 1.64525 1.13614 1.01010 1.44222 1.23665 0.96323 0.88894 1.01159 1.21755 0.93793 0.85731 0.93671 0.88140 1.45452 1.62875 1.13976 1.12022 1.20425 0.77720 0.83884 0.88151 1.90846 1.56124 1.81602 1.16042 1.23017 1.09449 0.90960 0.98668 1.20186 0.74762 0.83960 0.80083 1.93203 1.63656 1.89221 1.71140 1.93207 1.87652 1.60623 1.74585 1.93194 1.53342 1.90561 1.80025 1.22781 0.98768 0.92081 0.82107 0.89170 1.86152 1.70062 1.65310 1.15944 1.23562 0.97849 0.96587 0.92528 0.91295 0.77078 0.91157 0.87596 0.89911 0.92182 0.73448 0.80847 0.80584 0.74407 0.94005 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 42.19 29.55 68.60 2.03 44.22 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -28.83 5.29 -306.98 -1.62 -30.45 16 10 C 0.44 20.39 7.36 87.66 0.64 21.04 16 11 O -0.61 -32.08 13.37 -3.08 -0.04 -32.13 16 12 C 0.05 1.68 5.48 85.56 0.47 2.15 16 13 N -0.51 -16.20 5.26 -887.54 -4.67 -20.87 16 14 C 0.03 0.71 6.24 86.65 0.54 1.25 16 15 C 0.16 3.34 3.29 46.20 0.15 3.49 16 16 H 0.10 2.46 7.70 -2.39 -0.02 2.44 16 17 N -0.69 -10.54 5.14 -436.84 -2.25 -12.78 16 18 C 0.51 8.94 7.59 87.65 0.67 9.61 16 19 O -0.57 -15.67 14.56 -3.03 -0.04 -15.71 16 20 C -0.18 -1.51 5.75 29.85 0.17 -1.34 16 21 C 0.46 7.50 2.89 71.98 0.21 7.71 16 22 F -0.19 -4.17 16.40 44.97 0.74 -3.43 16 23 F -0.18 -2.58 17.32 44.97 0.78 -1.80 16 24 F -0.19 -4.03 16.40 44.97 0.74 -3.30 16 25 C 0.10 2.04 4.30 31.47 0.14 2.18 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 O -0.57 -8.19 11.61 -148.98 -1.73 -9.92 16 28 C 0.02 0.69 4.88 86.45 0.42 1.11 16 29 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 30 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 31 H 0.07 2.16 7.89 -2.39 -0.02 2.14 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.06 1.40 7.85 -2.39 -0.02 1.38 16 35 H 0.43 4.42 7.17 -92.71 -0.66 3.76 16 36 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.40 3.54 9.11 -74.06 -0.67 2.87 16 39 H 0.04 1.32 7.41 -2.39 -0.02 1.30 16 40 H 0.08 2.85 6.73 -2.39 -0.02 2.84 16 Total: -1.00 -74.73 350.18 -2.03 -76.76 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.93 Total: 28.98 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 4.69 Total: 29.35 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -8.26 Total: -113.02 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -1.81 Total: -57.76 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 2.25 Total: -8.53 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -74.73 -2.03 -76.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219308109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.314 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds