Wall clock time and date at job start Tue Mar 31 2020 22:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47211 * 240.00427 * 3 2 1 5 5 H 1.48499 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46997 * 120.00240 * 3 2 1 7 7 C 1.40030 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99887 * 192.10779 * 7 2 1 9 9 C 1.41539 * 120.00384 * 12.10913 * 7 2 1 10 10 C 1.41162 * 121.00265 * 201.12102 * 9 7 2 11 11 C 1.36593 * 119.13208 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25532 * 359.72819 * 11 10 9 13 13 C 1.32494 * 122.23360 * 0.56995 * 12 11 10 14 14 N 1.39454 * 119.65228 * 179.70608 * 13 12 11 15 15 C 1.34785 * 120.00006 * 6.01442 * 14 13 12 16 16 O 1.21577 * 119.99300 * 355.45907 * 15 14 13 17 17 N 1.34769 * 119.99997 * 175.45748 * 15 14 13 18 18 C 1.46501 * 119.99937 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.47236 * 180.02562 * 18 17 15 20 20 N 1.32613 * 125.18632 * 90.01892 * 19 18 17 21 21 C 1.32824 * 109.75610 * 180.02562 * 20 19 18 22 22 N 1.33820 * 132.50062 * 179.97438 * 21 20 19 23 23 C 1.31346 * 120.86491 * 179.97438 * 22 21 20 24 24 C 1.40044 * 120.31188 * 0.02562 * 23 22 21 25 25 C 1.35779 * 119.23943 * 359.97438 * 24 23 22 26 26 N 1.35974 * 119.02258 * 359.97438 * 25 24 23 27 27 N 1.31181 * 125.18269 * 270.02485 * 19 18 17 28 28 C 1.38646 * 120.70003 * 359.43205 * 13 12 11 29 29 H 0.97000 * 120.00226 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.43469 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.36929 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00237 * 186.01872 * 14 13 12 33 33 H 0.97003 * 120.00349 * 0.02562 * 17 15 14 34 34 H 1.08991 * 109.47233 * 59.99836 * 18 17 15 35 35 H 1.08999 * 109.46515 * 299.99427 * 18 17 15 36 36 H 1.08005 * 119.84587 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.38135 * 180.02562 * 24 23 22 38 38 H 1.08002 * 120.49095 * 180.02562 * 25 24 23 39 39 H 1.07996 * 120.66412 * 180.29724 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0695 -1.2233 0.1956 9 6 1.3234 -2.4248 -0.2582 10 6 1.8594 -3.6640 0.1538 11 6 1.1672 -4.8103 -0.1152 12 7 0.0077 -4.7784 -0.7467 13 6 -0.5402 -3.6456 -1.1614 14 7 -1.7644 -3.6751 -1.8287 15 6 -2.4422 -4.8345 -1.9425 16 8 -1.9492 -5.8691 -1.5366 17 7 -3.6663 -4.8469 -2.5060 18 6 -4.4033 -6.1071 -2.6291 19 6 -5.7333 -5.8488 -3.2890 20 7 -5.9583 -5.8861 -4.5954 21 6 -7.2347 -5.6113 -4.8392 22 7 -7.9407 -5.5266 -5.9729 23 6 -9.2208 -5.2334 -5.9492 24 6 -9.8707 -5.0029 -4.7303 25 6 -9.1624 -5.0866 -3.5749 26 7 -7.8390 -5.3931 -3.6331 27 7 -6.8450 -5.5526 -2.6587 28 6 0.0879 -2.4307 -0.9340 29 1 -0.4850 0.8400 0.0004 30 1 2.8045 -3.7051 0.6750 31 1 1.5735 -5.7604 0.1987 32 1 -2.1281 -2.8612 -2.2111 33 1 -4.0595 -4.0215 -2.8301 34 1 -4.5652 -6.5316 -1.6384 35 1 -3.8275 -6.8069 -3.2347 36 1 -9.7749 -5.1698 -6.8741 37 1 -10.9233 -4.7621 -4.7095 38 1 -9.6434 -4.9131 -2.6235 39 1 -0.3615 -1.5073 -1.2681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219701901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:58 Heat of formation + Delta-G solvation = 164.585178 kcal Electronic energy + Delta-G solvation = -26814.529539 eV Core-core repulsion = 22760.818030 eV Total energy + Delta-G solvation = -4053.711509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.37399 -39.85746 -39.29302 -37.98430 -35.24090 -34.67420 -34.12498 -33.70872 -31.81659 -31.15666 -30.45362 -28.91256 -27.27655 -25.97642 -25.09893 -24.14631 -22.09937 -21.78365 -21.25599 -20.10461 -18.90760 -18.66998 -18.10682 -17.65517 -17.05839 -16.74901 -16.11043 -15.36141 -15.26845 -14.97817 -14.75866 -14.36114 -14.12969 -13.89552 -13.67347 -13.38247 -13.23888 -13.03916 -12.98416 -12.79580 -12.56750 -12.47250 -12.14273 -11.41317 -11.16107 -10.86886 -10.59913 -10.50521 -10.29563 -10.20978 -10.08408 -9.75068 -9.57656 -9.36321 -9.30401 -8.90059 -7.95052 -7.69267 -6.96348 -6.72725 -4.60423 -0.11826 0.18311 1.37859 1.90644 2.73030 2.73637 2.84733 2.87361 3.01227 3.04421 3.19976 3.29025 3.44607 3.73570 3.85207 3.87513 4.03788 4.27213 4.52756 4.59879 4.72911 4.74668 5.18468 5.36214 5.43313 5.59852 5.75860 5.77285 5.81543 5.98848 6.50839 6.59569 6.65934 6.84887 6.91040 6.96184 7.20183 7.27170 7.47475 7.47879 7.53468 7.90958 8.13377 8.38299 8.50070 8.76709 8.78861 9.17250 9.78343 10.08591 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002078 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.604032 B =13468.661772 C =14678.594511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.139 3.861 10 C -0.285 4.285 11 C 0.120 3.880 12 N -0.553 5.553 13 C 0.354 3.646 14 N -0.665 5.665 15 C 0.698 3.302 16 O -0.529 6.529 17 N -0.749 5.749 18 C 0.237 3.763 19 C 0.267 3.733 20 N -0.506 5.506 21 C 0.438 3.562 22 N -0.452 5.452 23 C 0.206 3.794 24 C -0.223 4.223 25 C 0.174 3.826 26 N -0.328 5.328 27 N -0.312 5.312 28 C -0.249 4.249 29 H 0.281 0.719 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.404 0.596 33 H 0.393 0.607 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.192 0.808 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.159 -3.603 -9.429 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.034 4.034 12 N -0.272 5.272 13 C 0.128 3.872 14 N -0.312 5.312 15 C 0.398 3.602 16 O -0.399 6.399 17 N -0.409 5.409 18 C 0.110 3.890 19 C -0.015 4.015 20 N -0.238 5.238 21 C 0.078 3.922 22 N -0.166 5.166 23 C 0.020 3.980 24 C -0.248 4.248 25 C 0.036 3.964 26 N -0.107 5.107 27 N -0.144 5.144 28 C -0.275 4.275 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.226 0.774 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.209 0.791 37 H 0.193 0.807 38 H 0.201 0.799 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.366 -5.512 -9.309 24.845 hybrid contribution -0.512 2.666 0.440 2.750 sum -22.878 -2.846 -8.868 24.701 Atomic orbital electron populations 1.69732 1.07619 1.29170 1.35191 1.25984 0.94857 1.01550 0.92009 0.86252 0.80002 0.79734 0.80069 1.18745 1.20297 1.18890 1.19577 0.96365 0.90210 1.41864 0.90081 1.17579 0.90487 0.92275 0.86562 1.21641 1.03598 0.94065 1.11589 1.21464 0.90282 0.96698 0.94971 1.67189 1.13279 1.27453 1.19321 1.17976 0.84924 0.90843 0.93479 1.42489 1.20606 1.09828 1.58297 1.15905 0.79987 0.84890 0.79465 1.91028 1.67278 1.30404 1.51239 1.44969 1.18212 1.09813 1.67902 1.19260 0.82108 0.87188 1.00428 1.24547 0.95739 0.93690 0.87479 1.70820 1.10015 1.27556 1.15427 1.22826 0.90340 0.96358 0.82677 1.68040 1.08110 1.17024 1.23415 1.23635 0.88506 0.86579 0.99309 1.21998 1.03387 1.07999 0.91457 1.22220 0.80019 0.91825 1.02349 1.48883 1.08948 1.43581 1.09287 1.78675 0.96251 1.30528 1.08985 1.21780 1.00711 0.95591 1.09441 0.90795 0.88099 0.86028 0.76112 0.77359 0.88433 0.87979 0.79145 0.80673 0.79863 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.54 10.50 55.55 0.58 -18.96 16 2 C 0.07 1.80 5.31 -17.34 -0.09 1.71 16 3 Si 0.92 18.06 29.58 -169.99 -5.03 13.03 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -11.63 9.15 -37.65 -0.34 -11.98 16 8 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.14 3.72 5.65 -106.55 -0.60 3.12 16 10 C -0.28 -7.12 9.85 -39.07 -0.38 -7.51 16 11 C 0.12 2.95 11.10 -18.04 -0.20 2.75 16 12 N -0.55 -14.56 7.86 -12.76 -0.10 -14.66 16 13 C 0.35 8.84 7.42 -154.68 -1.15 7.69 16 14 N -0.66 -13.66 5.39 -15.86 -0.09 -13.74 16 15 C 0.70 14.02 8.52 -86.92 -0.74 13.28 16 16 O -0.53 -12.73 14.60 5.30 0.08 -12.65 16 17 N -0.75 -11.44 5.55 -66.42 -0.37 -11.81 16 18 C 0.24 3.31 6.30 -5.19 -0.03 3.28 16 19 C 0.27 3.65 7.46 -157.01 -1.17 2.48 16 20 N -0.51 -7.41 11.25 -11.80 -0.13 -7.54 16 21 C 0.44 5.44 8.99 -323.14 -2.91 2.53 16 22 N -0.45 -4.46 10.48 -13.82 -0.14 -4.60 16 23 C 0.21 0.85 11.27 -17.08 -0.19 0.66 16 24 C -0.22 -0.50 10.06 -39.79 -0.40 -0.90 16 25 C 0.17 0.89 11.32 -16.60 -0.19 0.71 16 26 N -0.33 -3.43 3.91 -13.84 -0.05 -3.49 16 27 N -0.31 -4.03 12.78 32.39 0.41 -3.61 16 28 C -0.25 -6.45 8.67 -38.45 -0.33 -6.78 16 29 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 30 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 32 H 0.40 6.90 8.72 -40.82 -0.36 6.54 16 33 H 0.39 5.20 8.48 -40.82 -0.35 4.86 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.19 -0.05 8.06 -52.48 -0.42 -0.48 16 37 H 0.18 -0.36 8.06 -52.49 -0.42 -0.79 16 38 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 39 H 0.14 3.55 5.81 -52.49 -0.30 3.25 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -37.49 350.05 -11.81 -49.30 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.51 Total: 12.42 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: -8.74 Total: 11.04 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: 0.11 Total: -78.42 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.49 -11.81 -49.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219701901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.889 kcal (2) G-P(sol) polarization free energy of solvation -37.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds