Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47211 * 240.00427 * 3 2 1 5 5 H 1.48499 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46997 * 120.00240 * 3 2 1 7 7 C 1.40030 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99887 * 192.10779 * 7 2 1 9 9 C 1.41539 * 120.00384 * 12.10913 * 7 2 1 10 10 C 1.41162 * 121.00265 * 201.12102 * 9 7 2 11 11 C 1.36593 * 119.13208 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.25532 * 359.72819 * 11 10 9 13 13 C 1.32494 * 122.23360 * 0.56995 * 12 11 10 14 14 N 1.39454 * 119.65228 * 179.70608 * 13 12 11 15 15 C 1.34785 * 120.00006 * 6.01442 * 14 13 12 16 16 O 1.21577 * 119.99300 * 355.45907 * 15 14 13 17 17 N 1.34769 * 119.99997 * 175.45748 * 15 14 13 18 18 C 1.46501 * 119.99937 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.47236 * 180.02562 * 18 17 15 20 20 N 1.32613 * 125.18632 * 90.01892 * 19 18 17 21 21 C 1.32824 * 109.75610 * 180.02562 * 20 19 18 22 22 N 1.33820 * 132.50062 * 179.97438 * 21 20 19 23 23 C 1.31346 * 120.86491 * 179.97438 * 22 21 20 24 24 C 1.40044 * 120.31188 * 0.02562 * 23 22 21 25 25 C 1.35779 * 119.23943 * 359.97438 * 24 23 22 26 26 N 1.35974 * 119.02258 * 359.97438 * 25 24 23 27 27 N 1.31181 * 125.18269 * 270.02485 * 19 18 17 28 28 C 1.38646 * 120.70003 * 359.43205 * 13 12 11 29 29 H 0.97000 * 120.00226 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.43469 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.36929 * 180.02562 * 11 10 9 32 32 H 0.97001 * 120.00237 * 186.01872 * 14 13 12 33 33 H 0.97003 * 120.00349 * 0.02562 * 17 15 14 34 34 H 1.08991 * 109.47233 * 59.99836 * 18 17 15 35 35 H 1.08999 * 109.46515 * 299.99427 * 18 17 15 36 36 H 1.08005 * 119.84587 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.38135 * 180.02562 * 24 23 22 38 38 H 1.08002 * 120.49095 * 180.02562 * 25 24 23 39 39 H 1.07996 * 120.66412 * 180.29724 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0695 -1.2233 0.1956 9 6 1.3234 -2.4248 -0.2582 10 6 1.8594 -3.6640 0.1538 11 6 1.1672 -4.8103 -0.1152 12 7 0.0077 -4.7784 -0.7467 13 6 -0.5402 -3.6456 -1.1614 14 7 -1.7644 -3.6751 -1.8287 15 6 -2.4422 -4.8345 -1.9425 16 8 -1.9492 -5.8691 -1.5366 17 7 -3.6663 -4.8469 -2.5060 18 6 -4.4033 -6.1071 -2.6291 19 6 -5.7333 -5.8488 -3.2890 20 7 -5.9583 -5.8861 -4.5954 21 6 -7.2347 -5.6113 -4.8392 22 7 -7.9407 -5.5266 -5.9729 23 6 -9.2208 -5.2334 -5.9492 24 6 -9.8707 -5.0029 -4.7303 25 6 -9.1624 -5.0866 -3.5749 26 7 -7.8390 -5.3931 -3.6331 27 7 -6.8450 -5.5526 -2.6587 28 6 0.0879 -2.4307 -0.9340 29 1 -0.4850 0.8400 0.0004 30 1 2.8045 -3.7051 0.6750 31 1 1.5735 -5.7604 0.1987 32 1 -2.1281 -2.8612 -2.2111 33 1 -4.0595 -4.0215 -2.8301 34 1 -4.5652 -6.5316 -1.6384 35 1 -3.8275 -6.8069 -3.2347 36 1 -9.7749 -5.1698 -6.8741 37 1 -10.9233 -4.7621 -4.7095 38 1 -9.6434 -4.9131 -2.6235 39 1 -0.3615 -1.5073 -1.2681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219701901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = 139.358177 kcal Electronic energy + Delta-G solvation = -26815.623464 eV Core-core repulsion = 22760.818030 eV Total energy + Delta-G solvation = -4054.805434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.09982 -41.46485 -40.10699 -39.68342 -36.43798 -35.94509 -35.51862 -35.47141 -32.63418 -32.34233 -31.89823 -30.56149 -28.51273 -27.90076 -25.66213 -24.83107 -23.84364 -23.50938 -22.30420 -21.80046 -19.86836 -19.53351 -19.44180 -19.13746 -18.01491 -17.73882 -17.09971 -17.02773 -16.66734 -16.23462 -16.05393 -15.96523 -15.53872 -15.23838 -14.76170 -14.70979 -14.39141 -14.32501 -14.19866 -13.85036 -13.80738 -13.75916 -13.18819 -13.13699 -12.85497 -12.67009 -12.04233 -11.91806 -11.55091 -11.46741 -11.39928 -11.18206 -11.04573 -10.83425 -10.29915 -9.99091 -9.91902 -9.62122 -8.83350 -8.57908 -6.56971 -0.55946 -0.43187 0.75398 0.84761 1.00977 1.03307 1.41506 1.52942 1.60291 1.73675 2.13490 2.19878 2.21708 2.34605 2.67810 2.84853 3.13905 3.29648 3.49435 3.79683 3.91758 4.11826 4.14715 4.32426 4.39893 4.51791 4.72404 4.74694 4.85061 4.91451 4.95026 5.00393 5.10966 5.19147 5.28040 5.32638 5.51995 5.65782 5.74311 5.98870 6.25403 6.32294 6.57368 6.70288 6.78637 6.84485 6.88436 7.52618 7.89759 8.27125 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.002078 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.604032 B =13468.661772 C =14678.594511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.477 4.477 8 H 0.085 0.915 9 C 0.109 3.891 10 C -0.297 4.297 11 C 0.113 3.887 12 N -0.579 5.579 13 C 0.350 3.650 14 N -0.658 5.658 15 C 0.700 3.300 16 O -0.570 6.570 17 N -0.727 5.727 18 C 0.243 3.757 19 C 0.259 3.741 20 N -0.553 5.553 21 C 0.421 3.579 22 N -0.495 5.495 23 C 0.216 3.784 24 C -0.183 4.183 25 C 0.144 3.856 26 N -0.330 5.330 27 N -0.332 5.332 28 C -0.267 4.267 29 H 0.291 0.709 30 H 0.116 0.884 31 H 0.149 0.851 32 H 0.419 0.581 33 H 0.405 0.595 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.240 0.760 37 H 0.234 0.766 38 H 0.215 0.785 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.196 -1.893 -10.300 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.101 3.899 10 C -0.321 4.321 11 C -0.040 4.040 12 N -0.299 5.299 13 C 0.123 3.877 14 N -0.307 5.307 15 C 0.399 3.601 16 O -0.444 6.444 17 N -0.386 5.386 18 C 0.116 3.884 19 C -0.023 4.023 20 N -0.287 5.287 21 C 0.061 3.939 22 N -0.211 5.211 23 C 0.033 3.967 24 C -0.207 4.207 25 C 0.009 3.991 26 N -0.110 5.110 27 N -0.166 5.166 28 C -0.293 4.293 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.166 0.834 32 H 0.256 0.744 33 H 0.240 0.760 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.256 0.744 37 H 0.250 0.750 38 H 0.231 0.769 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.527 -3.782 -10.218 27.755 hybrid contribution 0.081 2.158 0.591 2.239 sum -25.446 -1.624 -9.627 27.255 Atomic orbital electron populations 1.69769 1.08984 1.30800 1.34258 1.26883 0.95695 1.04730 0.90878 0.85107 0.78644 0.74997 0.80104 1.18392 1.19003 1.18392 1.19887 0.96810 0.91068 1.42968 0.89681 1.18034 0.91269 0.93429 0.87171 1.21828 1.04382 0.93803 1.12089 1.21920 0.89922 0.97832 0.94285 1.67307 1.14157 1.28056 1.20427 1.18175 0.85939 0.90427 0.93117 1.42363 1.19580 1.10866 1.57867 1.15971 0.80821 0.84021 0.79284 1.90992 1.68595 1.31690 1.53124 1.44711 1.16572 1.11100 1.66262 1.19177 0.82594 0.86131 1.00499 1.24131 0.95560 0.95125 0.87524 1.70645 1.12332 1.29724 1.15967 1.22929 0.90240 0.96767 0.83927 1.68150 1.10635 1.19758 1.22587 1.24688 0.86830 0.82972 1.02192 1.22722 1.05277 1.03383 0.89287 1.23189 0.78221 0.92472 1.05209 1.48920 1.10214 1.43742 1.08089 1.78482 0.96633 1.31268 1.10211 1.21766 1.01188 0.95752 1.10566 0.89744 0.86549 0.83418 0.74387 0.75955 0.88371 0.88572 0.74397 0.74994 0.76871 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.14 10.50 21.84 0.23 -39.91 16 2 C 0.03 1.67 5.31 85.29 0.45 2.12 16 3 Si 0.99 36.25 29.58 68.60 2.03 38.27 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 7 C -0.48 -24.99 9.15 23.52 0.22 -24.78 16 8 H 0.09 4.23 7.88 -2.91 -0.02 4.21 16 9 C 0.11 5.98 5.65 -21.11 -0.12 5.86 16 10 C -0.30 -15.15 9.85 22.60 0.22 -14.93 16 11 C 0.11 5.70 11.10 84.27 0.94 6.63 16 12 N -0.58 -31.30 7.86 -194.27 -1.53 -32.82 16 13 C 0.35 18.04 7.42 132.76 0.98 19.02 16 14 N -0.66 -27.81 5.39 -322.37 -1.74 -29.55 16 15 C 0.70 29.01 8.52 179.05 1.53 30.54 16 16 O -0.57 -28.43 14.60 -3.96 -0.06 -28.48 16 17 N -0.73 -23.07 5.55 -482.31 -2.68 -25.74 16 18 C 0.24 7.19 6.30 85.63 0.54 7.72 16 19 C 0.26 7.43 7.46 138.69 1.03 8.47 16 20 N -0.55 -17.00 11.25 -191.24 -2.15 -19.15 16 21 C 0.42 10.50 8.99 261.60 2.35 12.85 16 22 N -0.49 -9.13 10.48 -197.64 -2.07 -11.20 16 23 C 0.22 0.93 11.27 85.20 0.96 1.89 16 24 C -0.18 0.10 10.06 22.14 0.22 0.33 16 25 C 0.14 1.05 11.32 83.48 0.94 2.00 16 26 N -0.33 -6.70 3.91 -197.71 -0.77 -7.48 16 27 N -0.33 -8.77 12.78 -51.44 -0.66 -9.43 16 28 C -0.27 -14.21 8.67 23.00 0.20 -14.01 16 29 H 0.29 12.88 8.29 -92.71 -0.77 12.11 16 30 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 31 H 0.15 6.41 8.06 -2.91 -0.02 6.38 16 32 H 0.42 14.64 8.72 -92.71 -0.81 13.84 16 33 H 0.41 11.04 8.48 -92.71 -0.79 10.25 16 34 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.24 -1.48 8.06 -2.91 -0.02 -1.51 16 37 H 0.23 -2.76 8.06 -2.91 -0.02 -2.78 16 38 H 0.21 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.14 7.16 5.81 -2.91 -0.02 7.14 16 Total: -1.00 -87.15 350.05 0.64 -86.51 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.44 Total: 35.25 kcal Atomic # 6 Polarization: 33.27 SS G_CDS: 10.47 Total: 43.74 kcal Atomic # 7 Polarization: -163.92 SS G_CDS: -11.37 Total: -175.28 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.06 Total: -28.48 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.27 kcal Total: -87.15 0.64 -86.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219701901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.867 kcal (2) G-P(sol) polarization free energy of solvation -87.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds