Wall clock time and date at job start Tue Mar 31 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00310 * 2 1 4 4 H 1.48501 * 109.46877 * 270.00339 * 3 2 1 5 5 H 1.48499 * 109.47048 * 29.99788 * 3 2 1 6 6 H 1.48493 * 109.47260 * 150.00032 * 3 2 1 7 7 C 1.38813 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.47469 * 125.63405 * 179.97438 * 9 7 2 11 11 C 1.54905 * 104.81448 * 204.06845 * 10 9 7 12 12 H 1.09004 * 110.99845 * 81.13604 * 11 10 9 13 13 N 1.46499 * 111.00756 * 204.94875 * 11 10 9 14 14 C 1.34777 * 120.00199 * 270.42520 * 13 11 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 11 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 O 1.21277 * 120.00023 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99464 * 179.97438 * 17 16 14 20 20 C 1.46505 * 119.99516 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47064 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47458 * 59.99142 * 21 20 19 23 23 F 1.39895 * 109.47410 * 179.97438 * 21 20 19 24 24 F 1.39912 * 109.46817 * 299.99823 * 21 20 19 25 25 C 1.55155 * 101.61671 * 323.04848 * 11 10 9 26 26 H 1.09007 * 110.71967 * 153.84851 * 25 11 10 27 27 O 1.42899 * 110.71695 * 276.93821 * 25 11 10 28 28 C 1.47025 * 125.64530 * 359.97263 * 9 7 2 29 29 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.34658 * 85.25123 * 10 9 7 31 31 H 1.08997 * 110.40274 * 322.92412 * 10 9 7 32 32 H 0.97000 * 119.99484 * 90.41617 * 13 11 10 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 0.96995 * 120.00583 * 359.97438 * 19 17 16 36 36 H 1.08998 * 109.46922 * 299.99460 * 20 19 17 37 37 H 1.08994 * 109.47525 * 60.00140 * 20 19 17 38 38 H 0.96705 * 113.99873 * 180.02562 * 27 25 11 39 39 H 1.09001 * 109.88310 * 59.55752 * 28 9 7 40 40 H 1.08994 * 109.88479 * 298.39526 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9340 -3.7314 0.0005 11 6 0.8519 -4.6563 -0.6102 12 1 0.8566 -4.5974 -1.6986 13 7 1.0290 -6.0396 -0.1613 14 6 1.8115 -6.8815 -0.8649 15 8 2.3687 -6.4942 -1.8701 16 6 1.9887 -8.3061 -0.4065 17 6 2.8985 -9.0323 -1.3636 18 8 3.3574 -8.4505 -2.3236 19 7 3.2021 -10.3283 -1.1525 20 6 4.0861 -11.0344 -2.0833 21 6 4.2662 -12.4808 -1.6178 22 9 3.0211 -13.1179 -1.5827 23 9 5.1098 -13.1553 -2.5068 24 9 4.8317 -12.4918 -0.3381 25 6 -0.4485 -4.0441 -0.0259 26 1 -1.2986 -4.2517 -0.6759 27 8 -0.6910 -4.5370 1.2933 28 6 -0.1375 -2.5327 0.0006 29 1 -0.4850 0.8401 -0.0004 30 1 2.1674 -4.0417 1.0190 31 1 2.8332 -3.7413 -0.6154 32 1 0.5831 -6.3493 0.6426 33 1 2.4289 -8.3148 0.5907 34 1 1.0187 -8.8025 -0.3797 35 1 2.8354 -10.7936 -0.3845 36 1 3.6452 -11.0263 -3.0801 37 1 5.0560 -10.5379 -2.1108 38 1 -1.4929 -4.1850 1.7035 39 1 -0.5576 -2.0524 -0.8831 40 1 -0.5544 -2.0842 0.9022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220652043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:49 Heat of formation + Delta-G solvation = -236.803749 kcal Electronic energy + Delta-G solvation = -29287.496951 eV Core-core repulsion = 24302.628749 eV Total energy + Delta-G solvation = -4984.868202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.68957 -48.19822 -48.16929 -40.46084 -39.13100 -37.72862 -35.37770 -34.84641 -33.88039 -31.98464 -31.23575 -29.28665 -28.27659 -26.87555 -24.50016 -23.85718 -21.74764 -20.69599 -20.35074 -19.87595 -19.16168 -18.94314 -18.57222 -17.59696 -17.13745 -16.81064 -16.25533 -16.18000 -15.78402 -15.20401 -15.18538 -14.95072 -14.73518 -14.64374 -14.59032 -14.31717 -14.30332 -14.01320 -13.81123 -13.61119 -13.47757 -13.08676 -12.69480 -12.63443 -12.45149 -12.33323 -11.99461 -11.28974 -10.94751 -10.82760 -10.51937 -10.45833 -10.34446 -10.10444 -9.81207 -9.74425 -9.45329 -9.29715 -8.69213 -8.61667 -6.87073 -5.74645 -3.07374 1.94747 2.31131 2.37052 2.83774 3.13086 3.34943 3.40964 3.44824 3.45955 3.47885 3.70168 4.23521 4.47070 4.54140 4.61540 4.77828 4.85595 4.96288 5.09403 5.29226 5.37953 5.54536 5.64978 5.72268 5.87441 6.08295 6.22085 6.61613 6.68467 6.85062 6.94960 7.32924 7.44390 7.72500 7.79364 7.85065 8.05310 8.20220 8.50491 9.18450 9.78511 10.42861 11.37719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.001970 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.941540 B =14207.049335 C =14835.005043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.131 3.869 11 C 0.141 3.859 12 H 0.103 0.897 13 N -0.710 5.710 14 C 0.507 3.493 15 O -0.500 6.500 16 C -0.162 4.162 17 C 0.520 3.480 18 O -0.478 6.478 19 N -0.739 5.739 20 C 0.080 3.920 21 C 0.449 3.551 22 F -0.179 7.179 23 F -0.173 7.173 24 F -0.178 7.178 25 C 0.068 3.932 26 H 0.061 0.939 27 O -0.568 6.568 28 C 0.154 3.846 29 H 0.252 0.748 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.405 0.595 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.406 0.594 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.379 0.621 39 H 0.055 0.945 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -26.718 1.231 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.036 3.964 12 H 0.121 0.879 13 N -0.363 5.363 14 C 0.290 3.710 15 O -0.373 6.373 16 C -0.205 4.205 17 C 0.305 3.695 18 O -0.347 6.347 19 N -0.397 5.397 20 C -0.045 4.045 21 C 0.394 3.606 22 F -0.160 7.160 23 F -0.155 7.155 24 F -0.160 7.160 25 C 0.008 3.992 26 H 0.078 0.922 27 O -0.374 6.374 28 C 0.029 3.971 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.240 0.760 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.241 0.759 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.227 0.773 39 H 0.073 0.927 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.446 -26.079 -0.364 26.196 hybrid contribution -0.491 0.489 1.067 1.272 sum 1.955 -25.591 0.703 25.675 Atomic orbital electron populations 1.69913 1.04905 1.25104 1.57626 1.24794 0.95795 0.97725 1.02292 0.86062 0.78563 0.83207 0.77622 1.21537 1.21694 1.20669 1.19098 0.90566 0.82181 1.43281 0.90271 1.44295 1.01260 0.99937 1.87306 1.21847 0.94685 0.85743 0.97361 1.22319 0.95263 0.79475 0.99392 0.87882 1.45717 1.49611 1.11434 1.29539 1.19830 0.80139 0.86476 0.84560 1.90877 1.45410 1.76843 1.24188 1.21557 1.02185 0.95599 1.01143 1.20101 0.81971 0.80622 0.86796 1.90923 1.50118 1.65081 1.28614 1.45719 1.51770 1.12371 1.29840 1.22405 0.99674 0.86045 0.96421 1.20574 0.74196 0.90209 0.75604 1.93229 1.42161 1.84411 1.96221 1.93232 1.71669 1.82315 1.68272 1.93237 1.85231 1.97030 1.40473 1.23508 0.95594 0.96922 0.83169 0.92151 1.86235 1.49207 1.71457 1.30511 1.21856 0.85566 0.87744 1.01943 0.93742 0.95684 0.93725 0.75950 0.85720 0.85839 0.75876 0.86739 0.86692 0.77295 0.92656 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.85 10.31 55.49 0.57 -26.28 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.51 3.40 -170.04 -0.58 -16.09 16 10 C 0.13 2.88 6.93 -2.51 -0.02 2.86 16 11 C 0.14 2.57 3.25 -65.79 -0.21 2.36 16 12 H 0.10 2.05 7.63 -51.93 -0.40 1.65 16 13 N -0.71 -10.06 5.18 -51.73 -0.27 -10.33 16 14 C 0.51 7.31 7.82 -10.98 -0.09 7.23 16 15 O -0.50 -9.91 13.87 -18.96 -0.26 -10.17 16 16 C -0.16 -1.36 6.19 -29.03 -0.18 -1.54 16 17 C 0.52 5.46 7.82 -10.99 -0.09 5.37 16 18 O -0.48 -7.67 14.18 -18.96 -0.27 -7.94 16 19 N -0.74 -4.85 5.42 -60.29 -0.33 -5.18 16 20 C 0.08 0.49 5.64 -4.04 -0.02 0.47 16 21 C 0.45 2.64 3.11 37.16 0.12 2.76 16 22 F -0.18 -1.14 17.18 2.25 0.04 -1.11 16 23 F -0.17 -1.19 17.32 2.25 0.04 -1.15 16 24 F -0.18 -1.17 17.18 2.25 0.04 -1.13 16 25 C 0.07 1.19 4.19 -24.90 -0.10 1.08 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 O -0.57 -8.51 12.14 -35.23 -0.43 -8.94 16 28 C 0.15 3.59 5.14 -3.06 -0.02 3.57 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 4.74 7.56 -40.82 -0.31 4.43 16 33 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.41 1.55 8.36 -40.82 -0.34 1.20 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.38 4.36 9.12 45.56 0.42 4.78 16 39 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 40 H 0.05 1.34 7.44 -51.93 -0.39 0.95 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -37.28 353.52 -5.90 -43.19 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -3.91 Total: 5.21 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: -0.86 Total: 17.31 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.60 Total: -57.87 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.96 Total: -27.05 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.12 Total: -3.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.28 -5.90 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220652043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.615 kcal (2) G-P(sol) polarization free energy of solvation -37.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds