Wall clock time and date at job start Tue Mar 31 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00310 * 2 1 4 4 H 1.48501 * 109.46877 * 270.00339 * 3 2 1 5 5 H 1.48499 * 109.47048 * 29.99788 * 3 2 1 6 6 H 1.48493 * 109.47260 * 150.00032 * 3 2 1 7 7 C 1.38813 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00448 * 0.02562 * 7 2 1 10 10 C 1.47469 * 125.63405 * 179.97438 * 9 7 2 11 11 C 1.54905 * 104.81448 * 204.06845 * 10 9 7 12 12 H 1.09004 * 110.99845 * 81.13604 * 11 10 9 13 13 N 1.46499 * 111.00756 * 204.94875 * 11 10 9 14 14 C 1.34777 * 120.00199 * 270.42520 * 13 11 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 11 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 O 1.21277 * 120.00023 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99464 * 179.97438 * 17 16 14 20 20 C 1.46505 * 119.99516 * 179.97438 * 19 17 16 21 21 C 1.53003 * 109.47064 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47458 * 59.99142 * 21 20 19 23 23 F 1.39895 * 109.47410 * 179.97438 * 21 20 19 24 24 F 1.39912 * 109.46817 * 299.99823 * 21 20 19 25 25 C 1.55155 * 101.61671 * 323.04848 * 11 10 9 26 26 H 1.09007 * 110.71967 * 153.84851 * 25 11 10 27 27 O 1.42899 * 110.71695 * 276.93821 * 25 11 10 28 28 C 1.47025 * 125.64530 * 359.97263 * 9 7 2 29 29 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.34658 * 85.25123 * 10 9 7 31 31 H 1.08997 * 110.40274 * 322.92412 * 10 9 7 32 32 H 0.97000 * 119.99484 * 90.41617 * 13 11 10 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 0.96995 * 120.00583 * 359.97438 * 19 17 16 36 36 H 1.08998 * 109.46922 * 299.99460 * 20 19 17 37 37 H 1.08994 * 109.47525 * 60.00140 * 20 19 17 38 38 H 0.96705 * 113.99873 * 180.02562 * 27 25 11 39 39 H 1.09001 * 109.88310 * 59.55752 * 28 9 7 40 40 H 1.08994 * 109.88479 * 298.39526 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9340 -3.7314 0.0005 11 6 0.8519 -4.6563 -0.6102 12 1 0.8566 -4.5974 -1.6986 13 7 1.0290 -6.0396 -0.1613 14 6 1.8115 -6.8815 -0.8649 15 8 2.3687 -6.4942 -1.8701 16 6 1.9887 -8.3061 -0.4065 17 6 2.8985 -9.0323 -1.3636 18 8 3.3574 -8.4505 -2.3236 19 7 3.2021 -10.3283 -1.1525 20 6 4.0861 -11.0344 -2.0833 21 6 4.2662 -12.4808 -1.6178 22 9 3.0211 -13.1179 -1.5827 23 9 5.1098 -13.1553 -2.5068 24 9 4.8317 -12.4918 -0.3381 25 6 -0.4485 -4.0441 -0.0259 26 1 -1.2986 -4.2517 -0.6759 27 8 -0.6910 -4.5370 1.2933 28 6 -0.1375 -2.5327 0.0006 29 1 -0.4850 0.8401 -0.0004 30 1 2.1674 -4.0417 1.0190 31 1 2.8332 -3.7413 -0.6154 32 1 0.5831 -6.3493 0.6426 33 1 2.4289 -8.3148 0.5907 34 1 1.0187 -8.8025 -0.3797 35 1 2.8354 -10.7936 -0.3845 36 1 3.6452 -11.0263 -3.0801 37 1 5.0560 -10.5379 -2.1108 38 1 -1.4929 -4.1850 1.7035 39 1 -0.5576 -2.0524 -0.8831 40 1 -0.5544 -2.0842 0.9022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220652043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:49 Heat of formation + Delta-G solvation = -268.195564 kcal Electronic energy + Delta-G solvation = -29288.858202 eV Core-core repulsion = 24302.628749 eV Total energy + Delta-G solvation = -4986.229453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.19731 -48.71609 -48.67002 -41.44383 -40.34109 -39.10055 -36.43065 -36.12418 -35.29477 -33.66103 -32.29131 -30.39908 -29.65438 -28.48523 -26.35864 -24.47533 -22.81555 -22.22019 -21.62733 -21.21965 -19.66058 -19.48613 -19.35165 -19.06104 -18.40147 -18.06421 -17.26317 -16.99543 -16.83073 -16.64134 -16.25964 -15.89058 -15.74384 -15.51753 -15.41004 -15.10208 -15.03740 -14.84224 -14.81887 -14.77540 -14.46757 -14.38275 -14.35996 -14.09081 -13.87272 -13.17969 -12.97696 -12.95549 -12.76191 -12.71411 -12.25648 -12.11050 -11.90600 -11.85537 -11.27235 -10.85662 -10.76692 -10.56061 -10.40617 -9.99410 -8.94466 -7.89180 -5.24713 1.36137 1.44593 1.46734 1.55156 1.56083 1.74162 1.76893 2.30558 2.49927 2.64447 2.96000 3.16720 3.21112 3.29838 3.48938 3.65433 3.85279 3.97691 4.02562 4.12009 4.29868 4.33067 4.43442 4.46181 4.55858 4.69928 4.85212 5.05426 5.09238 5.36274 5.47533 5.55908 5.65686 6.14888 6.29981 6.70687 6.91462 7.06863 7.14184 7.44015 7.71062 8.34387 9.20618 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026410 B = 0.001970 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.941540 B =14207.049335 C =14835.005043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.623 5.623 10 C 0.131 3.869 11 C 0.154 3.846 12 H 0.084 0.916 13 N -0.695 5.695 14 C 0.501 3.499 15 O -0.559 6.559 16 C -0.148 4.148 17 C 0.519 3.481 18 O -0.543 6.543 19 N -0.719 5.719 20 C 0.079 3.921 21 C 0.460 3.540 22 F -0.179 7.179 23 F -0.179 7.179 24 F -0.180 7.180 25 C 0.095 3.905 26 H 0.091 0.909 27 O -0.561 6.561 28 C 0.158 3.842 29 H 0.250 0.750 30 H 0.029 0.971 31 H 0.022 0.978 32 H 0.422 0.578 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.423 0.577 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.399 0.601 39 H 0.022 0.978 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -28.877 2.762 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.350 5.350 10 C 0.005 3.995 11 C 0.046 3.954 12 H 0.102 0.898 13 N -0.349 5.349 14 C 0.287 3.713 15 O -0.436 6.436 16 C -0.189 4.189 17 C 0.305 3.695 18 O -0.417 6.417 19 N -0.377 5.377 20 C -0.047 4.047 21 C 0.405 3.595 22 F -0.160 7.160 23 F -0.160 7.160 24 F -0.161 7.161 25 C 0.035 3.965 26 H 0.109 0.891 27 O -0.369 6.369 28 C 0.033 3.967 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.183 0.817 34 H 0.189 0.811 35 H 0.261 0.739 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.249 0.751 39 H 0.040 0.960 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.740 -28.332 1.251 28.413 hybrid contribution -0.257 1.095 0.628 1.289 sum 1.483 -27.237 1.880 27.342 Atomic orbital electron populations 1.70111 1.05986 1.25497 1.58040 1.25609 0.96797 1.00792 1.02269 0.85065 0.77645 0.79044 0.77486 1.21360 1.21441 1.19721 1.19402 0.90850 0.83772 1.43511 0.90747 1.44588 1.02628 1.00629 1.87176 1.21904 0.95115 0.85278 0.97239 1.21824 0.94101 0.81313 0.98133 0.89820 1.45533 1.49791 1.09511 1.30115 1.20870 0.78443 0.88571 0.83419 1.90872 1.47501 1.78348 1.26883 1.21607 1.04524 0.90991 1.01817 1.20487 0.81508 0.81303 0.86181 1.90918 1.52751 1.66689 1.31380 1.45487 1.50855 1.11318 1.30079 1.22428 0.99657 0.86090 0.96520 1.20383 0.73979 0.89784 0.75304 1.93232 1.42166 1.84431 1.96206 1.93225 1.71875 1.82387 1.68508 1.93237 1.85286 1.97020 1.40586 1.23074 0.96076 0.92368 0.85000 0.89084 1.86192 1.50722 1.70788 1.29242 1.21735 0.84002 0.91831 0.99137 0.94111 0.95335 0.95981 0.73947 0.81670 0.81086 0.73856 0.86565 0.86771 0.75053 0.95984 0.95437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.17 10.31 21.65 0.22 -55.94 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 3 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.25 -14.35 10.28 84.03 0.86 -13.49 16 8 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -33.05 3.40 -691.89 -2.35 -35.40 16 10 C 0.13 5.88 6.93 86.85 0.60 6.48 16 11 C 0.15 5.52 3.25 46.38 0.15 5.67 16 12 H 0.08 3.39 7.63 -2.38 -0.02 3.37 16 13 N -0.70 -18.09 5.18 -435.97 -2.26 -20.35 16 14 C 0.50 13.57 7.82 87.66 0.69 14.26 16 15 O -0.56 -22.47 13.87 20.40 0.28 -22.19 16 16 C -0.15 -1.90 6.19 29.10 0.18 -1.72 16 17 C 0.52 9.84 7.82 87.66 0.69 10.52 16 18 O -0.54 -17.51 14.18 20.42 0.29 -17.22 16 19 N -0.72 -7.58 5.42 -463.06 -2.51 -10.08 16 20 C 0.08 0.86 5.64 86.38 0.49 1.34 16 21 C 0.46 4.58 3.11 71.98 0.22 4.81 16 22 F -0.18 -1.89 17.18 44.97 0.77 -1.12 16 23 F -0.18 -2.22 17.32 44.97 0.78 -1.44 16 24 F -0.18 -1.98 17.18 44.97 0.77 -1.21 16 25 C 0.10 3.18 4.19 31.78 0.13 3.31 16 26 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 27 O -0.56 -15.12 12.14 -148.98 -1.81 -16.93 16 28 C 0.16 7.50 5.14 86.73 0.45 7.94 16 29 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.42 8.19 7.56 -92.71 -0.70 7.48 16 33 H 0.17 0.87 8.14 -2.38 -0.02 0.86 16 34 H 0.17 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.42 1.61 8.36 -92.71 -0.78 0.83 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.40 7.87 9.12 -74.05 -0.68 7.19 16 39 H 0.02 1.17 7.38 -2.39 -0.02 1.16 16 40 H 0.03 1.42 7.44 -2.39 -0.02 1.40 16 Total: -1.00 -86.54 353.52 0.13 -86.41 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -1.01 Total: 10.86 kcal Atomic # 6 Polarization: 31.13 SS G_CDS: 4.92 Total: 36.05 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.89 Total: -121.77 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -1.24 Total: -56.33 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 2.32 Total: -3.76 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -86.54 0.13 -86.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220652043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.788 kcal (2) G-P(sol) polarization free energy of solvation -86.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds