Wall clock time and date at job start Tue Mar 31 2020 22:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48505 * 109.46760 * 240.00086 * 3 2 1 5 5 H 1.48497 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46976 * 120.00171 * 3 2 1 7 7 C 1.38946 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00161 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99999 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00263 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47420 * 180.02562 * 12 10 9 14 14 C 1.46851 * 111.00462 * 169.99999 * 13 12 10 15 15 C 1.53037 * 109.52313 * 185.84106 * 14 13 12 16 16 C 1.53115 * 109.27795 * 300.81880 * 15 14 13 17 17 N 1.46504 * 109.52085 * 177.55947 * 16 15 14 18 18 C 1.34777 * 119.99854 * 154.99843 * 17 16 15 19 19 O 1.21573 * 119.99941 * 0.02562 * 18 17 16 20 20 C 1.47756 * 120.00007 * 180.27931 * 18 17 16 21 21 C 1.39348 * 124.11442 * 179.45385 * 20 18 17 22 22 N 1.30093 * 112.14298 * 179.77897 * 21 20 18 23 23 S 1.55924 * 108.75520 * 0.46219 * 22 21 20 24 24 N 1.31481 * 124.11320 * 359.74924 * 20 18 17 25 25 C 1.53112 * 109.16148 * 57.66012 * 16 15 14 26 26 C 1.46850 * 111.00346 * 294.21553 * 13 12 10 27 27 H 0.96993 * 120.00063 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00636 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47306 * 60.00191 * 12 10 9 30 30 H 1.08999 * 109.47103 * 300.00673 * 12 10 9 31 31 H 1.09002 * 109.45975 * 65.82225 * 14 13 12 32 32 H 1.09003 * 109.45122 * 305.85389 * 14 13 12 33 33 H 1.08998 * 109.49803 * 180.88149 * 15 14 13 34 34 H 1.08993 * 109.50241 * 60.76503 * 15 14 13 35 35 H 1.08998 * 109.52332 * 297.68641 * 16 15 14 36 36 H 0.97000 * 120.00410 * 335.00568 * 17 16 15 37 37 H 1.08002 * 123.92866 * 0.02562 * 21 20 18 38 38 H 1.09000 * 109.50486 * 62.28350 * 25 16 15 39 39 H 1.09002 * 109.50724 * 182.40669 * 25 16 15 40 40 H 1.09007 * 109.45371 * 294.17405 * 26 13 12 41 41 H 1.09003 * 109.46142 * 54.14463 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5579 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.5143 -7.2570 0.2348 15 6 2.5509 -8.3744 0.3725 16 6 3.3847 -8.4512 -0.9094 17 7 4.4168 -9.4803 -0.7612 18 6 4.9280 -10.0841 -1.8524 19 8 4.5330 -9.7743 -2.9596 20 6 5.9645 -11.1264 -1.7025 21 6 6.5429 -11.8123 -2.7687 22 7 7.4319 -12.6753 -2.3721 23 16 7.5149 -12.6302 -0.8157 24 7 6.4493 -11.5235 -0.5467 25 6 4.0477 -7.0940 -1.1597 26 6 2.9679 -6.0136 -1.2530 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3907 -0.0005 29 1 0.6170 -4.9201 -0.8919 30 1 0.6175 -4.9212 0.8880 31 1 0.8531 -7.4761 -0.6036 32 1 0.9284 -7.1900 1.1516 33 1 2.0421 -9.3249 0.5331 34 1 3.2038 -8.1628 1.2192 35 1 2.7379 -8.7023 -1.7501 36 1 4.7322 -9.7273 0.1222 37 1 6.2862 -11.6440 -3.8042 38 1 4.7243 -6.8622 -0.3371 39 1 4.6084 -7.1296 -2.0938 40 1 2.2998 -6.2386 -2.0844 41 1 3.4377 -5.0437 -1.4169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226220113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:06 Heat of formation + Delta-G solvation = -4.385258 kcal Electronic energy + Delta-G solvation = -26229.665346 eV Core-core repulsion = 22271.777929 eV Total energy + Delta-G solvation = -3957.887417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52731 -39.86201 -38.79062 -37.51813 -35.15858 -34.09426 -33.79779 -31.68623 -31.14653 -30.72809 -28.10170 -26.98888 -24.74059 -23.67165 -23.13786 -22.22392 -20.68294 -19.93656 -19.80444 -19.17343 -18.01154 -17.84328 -16.50350 -16.41275 -16.02283 -15.78856 -15.34381 -15.00984 -14.76660 -14.60638 -14.32162 -13.93783 -13.75714 -13.44583 -13.22929 -13.11573 -12.67412 -12.31158 -11.92010 -11.87834 -11.71400 -11.63053 -11.49003 -11.48590 -11.18587 -11.12013 -11.04596 -10.67457 -10.58942 -10.42873 -10.30039 -10.19653 -9.68259 -9.46711 -9.21466 -8.42179 -7.96167 -7.82786 -6.40176 -3.80881 -0.02857 0.92823 1.12838 1.17024 2.74465 2.79145 3.21117 3.26729 3.31081 3.91772 3.98839 4.03826 4.25426 4.39355 4.64222 4.66195 4.87659 5.03029 5.04746 5.06710 5.26572 5.32540 5.42146 5.51622 5.62312 5.68539 5.80373 5.82432 5.91742 5.96539 6.00685 6.09148 6.19030 6.30048 6.45146 6.53496 7.16530 7.30649 7.43249 7.56534 7.79676 8.07918 8.63594 9.19682 9.56254 10.08183 10.77493 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.001872 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.022364 B =14953.289453 C =15391.437640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.517 5.517 14 C 0.059 3.941 15 C -0.120 4.120 16 C 0.142 3.858 17 N -0.701 5.701 18 C 0.603 3.397 19 O -0.521 6.521 20 C 0.013 3.987 21 C 0.090 3.910 22 N -0.578 5.578 23 S 0.719 5.281 24 N -0.547 5.547 25 C -0.121 4.121 26 C 0.056 3.944 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.409 0.591 37 H 0.215 0.785 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 -25.881 -0.431 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.241 5.241 14 C -0.070 4.070 15 C -0.159 4.159 16 C 0.039 3.961 17 N -0.351 5.351 18 C 0.383 3.617 19 O -0.396 6.396 20 C -0.162 4.162 21 C -0.103 4.103 22 N -0.419 5.419 23 S 0.761 5.239 24 N -0.397 5.397 25 C -0.160 4.160 26 C -0.072 4.072 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.232 0.768 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.476 -26.522 0.470 28.168 hybrid contribution -1.668 1.540 -1.357 2.645 sum 7.808 -24.982 -0.887 26.188 Atomic orbital electron populations 1.69604 1.05910 1.28223 1.50633 1.25258 0.95638 0.99704 0.97388 0.85921 0.78752 0.80510 0.79051 1.19934 1.21017 1.19922 1.19638 0.93316 0.82226 1.47600 0.87983 1.41866 1.09186 1.04586 1.64473 1.19749 0.88421 0.84556 0.84383 1.90483 1.13693 1.86877 1.55082 1.21827 0.93918 0.91175 1.01557 1.61534 1.25082 1.01337 1.36189 1.22027 0.94858 0.89126 1.01014 1.21835 0.98188 0.98480 0.97351 1.21261 0.88554 0.87115 0.99204 1.45928 1.40672 1.39394 1.09136 1.16749 0.80097 0.79773 0.85063 1.90858 1.59890 1.63903 1.24954 1.22581 1.03210 1.03113 0.87323 1.23814 0.91862 0.91315 1.03332 1.72277 1.24154 1.26539 1.18907 1.79118 1.25827 1.22786 0.96183 1.72443 1.16809 1.18274 1.32183 1.21931 0.98711 0.92651 1.02668 1.22218 0.94953 1.01308 0.88769 0.91855 0.77498 0.93419 0.89310 0.94892 0.90198 0.91048 0.90186 0.89320 0.75586 0.76833 0.90560 0.91251 0.95717 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 10 C 0.44 10.32 7.46 -10.99 -0.08 10.24 16 11 O -0.58 -15.28 13.90 5.55 0.08 -15.21 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 13 N -0.52 -8.30 4.40 -236.11 -1.04 -9.34 16 14 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 15 C -0.12 -1.21 5.57 -26.65 -0.15 -1.36 16 16 C 0.14 1.62 2.52 -67.81 -0.17 1.45 16 17 N -0.70 -7.14 5.08 -54.66 -0.28 -7.41 16 18 C 0.60 6.80 7.79 -12.37 -0.10 6.71 16 19 O -0.52 -7.26 16.47 5.30 0.09 -7.17 16 20 C 0.01 0.12 6.81 -83.71 -0.57 -0.45 16 21 C 0.09 0.77 11.22 -17.88 -0.20 0.57 16 22 N -0.58 -4.80 11.41 19.43 0.22 -4.58 16 23 S 0.72 4.43 23.69 -107.50 -2.55 1.88 16 24 N -0.55 -4.61 11.00 23.17 0.25 -4.36 16 25 C -0.12 -1.68 5.67 -26.65 -0.15 -1.83 16 26 C 0.06 0.90 5.11 -3.83 -0.02 0.89 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 28 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 29 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.09 1.39 7.99 -51.93 -0.41 0.97 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 36 H 0.41 3.55 8.19 -40.82 -0.33 3.21 16 37 H 0.22 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.11 2.15 5.78 -51.93 -0.30 1.85 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.78 359.34 -8.96 -41.75 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.07 Total: 11.25 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.73 Total: 9.74 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.17 Total: -63.70 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.16 Total: -22.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -2.55 Total: 1.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.78 -8.96 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226220113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.363 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds