Wall clock time and date at job start Tue Mar 31 2020 22:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47400 * 240.00279 * 3 2 1 5 5 H 1.48507 * 109.46835 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47058 * 120.00056 * 3 2 1 7 7 C 1.38955 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99724 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99957 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00132 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99776 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47291 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00381 * 170.00059 * 13 12 10 15 15 C 1.53030 * 109.52528 * 185.83913 * 14 13 12 16 16 C 1.53119 * 109.28168 * 300.81826 * 15 14 13 17 17 N 1.46499 * 109.52531 * 177.55929 * 16 15 14 18 18 C 1.34777 * 119.99665 * 155.40632 * 17 16 15 19 19 O 1.21623 * 120.00244 * 359.72094 * 18 17 16 20 20 C 1.47169 * 119.99709 * 179.72413 * 18 17 16 21 21 C 1.38247 * 128.47463 * 179.97438 * 20 18 17 22 22 N 1.31238 * 111.88765 * 180.02562 * 21 20 18 23 23 N 1.27340 * 120.03995 * 359.97438 * 22 21 20 24 24 S 1.56637 * 109.73894 * 359.69748 * 23 22 21 25 25 C 1.53122 * 109.20839 * 57.62184 * 16 15 14 26 26 C 1.46849 * 110.99599 * 294.21017 * 13 12 10 27 27 H 0.96997 * 119.99721 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99406 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.47172 * 59.99751 * 12 10 9 30 30 H 1.09002 * 109.46905 * 300.00131 * 12 10 9 31 31 H 1.09000 * 109.46548 * 65.82103 * 14 13 12 32 32 H 1.09003 * 109.44890 * 305.85037 * 14 13 12 33 33 H 1.09000 * 109.50480 * 180.87602 * 15 14 13 34 34 H 1.09005 * 109.50588 * 60.76135 * 15 14 13 35 35 H 1.09004 * 109.52333 * 297.69124 * 16 15 14 36 36 H 0.97001 * 119.99790 * 335.12345 * 17 16 15 37 37 H 1.07992 * 124.05656 * 0.02562 * 21 20 18 38 38 H 1.08997 * 109.50697 * 62.32004 * 25 16 15 39 39 H 1.09009 * 109.50224 * 182.43989 * 25 16 15 40 40 H 1.08992 * 109.46206 * 294.17120 * 26 13 12 41 41 H 1.08998 * 109.46222 * 54.15899 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.5141 -7.2570 0.2358 15 6 2.5506 -8.3744 0.3735 16 6 3.3844 -8.4513 -0.9085 17 7 4.4164 -9.4805 -0.7603 18 6 4.9334 -10.0784 -1.8519 19 8 4.5396 -9.7672 -2.9598 20 6 5.9745 -11.1080 -1.7034 21 6 6.6200 -11.8273 -2.6918 22 7 7.4965 -12.6669 -2.1927 23 7 7.6637 -12.7395 -0.9324 24 16 6.7132 -11.7233 -0.2132 25 6 4.0474 -7.0943 -1.1604 26 6 2.9676 -6.0136 -1.2520 27 1 -0.4849 0.8400 0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6174 -4.9205 -0.8914 30 1 0.6168 -4.9209 0.8886 31 1 0.8529 -7.4762 -0.6025 32 1 0.9283 -7.1900 1.1526 33 1 2.0418 -9.3249 0.5342 34 1 3.2036 -8.1629 1.2202 35 1 2.7376 -8.7024 -1.7492 36 1 4.7305 -9.7287 0.1233 37 1 6.4263 -11.7122 -3.7480 38 1 4.7246 -6.8619 -0.3385 39 1 4.6074 -7.1307 -2.0949 40 1 2.2996 -6.2386 -2.0833 41 1 3.4375 -5.0438 -1.4158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226259319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:46 Heat of formation + Delta-G solvation = 10.467853 kcal Electronic energy + Delta-G solvation = -26140.152302 eV Core-core repulsion = 22182.908964 eV Total energy + Delta-G solvation = -3957.243338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30832 -40.27191 -38.97428 -37.60523 -35.22204 -33.89006 -32.80586 -31.69167 -31.18454 -30.79891 -28.24009 -27.03409 -24.77017 -23.67330 -23.22581 -22.24070 -21.03343 -20.10185 -19.59535 -19.20941 -17.88957 -17.86474 -16.64539 -16.35786 -16.04592 -15.68355 -15.31757 -15.09168 -14.89793 -14.70023 -14.50121 -14.00756 -13.80606 -13.52964 -13.32098 -13.18829 -13.16259 -12.46131 -12.36970 -11.93767 -11.77758 -11.51763 -11.26528 -11.20070 -11.08396 -10.81806 -10.75746 -10.66396 -10.57729 -10.44989 -10.42131 -10.33632 -10.22222 -9.52015 -9.36816 -8.46497 -7.99355 -7.87471 -6.42710 -3.83481 -0.76194 0.30332 0.98142 1.50154 2.50427 2.56111 3.19182 3.25104 3.29264 3.53708 3.88325 3.94339 4.17685 4.22378 4.23749 4.55138 4.78245 4.93519 5.01697 5.10591 5.23416 5.25289 5.34052 5.42279 5.54284 5.62299 5.72495 5.76258 5.88994 5.93064 6.00742 6.05095 6.26136 6.36052 6.47581 6.91307 7.15139 7.24441 7.37527 7.54054 7.61294 8.05122 8.60650 9.17032 9.53404 10.05073 10.74894 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.001911 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.806127 B =14645.095799 C =15039.428244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.058 3.942 15 C -0.121 4.121 16 C 0.143 3.857 17 N -0.713 5.713 18 C 0.601 3.399 19 O -0.512 6.512 20 C -0.285 4.285 21 C 0.075 3.925 22 N -0.251 5.251 23 N -0.255 5.255 24 S 0.422 5.578 25 C -0.122 4.122 26 C 0.055 3.945 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.399 0.601 37 H 0.217 0.783 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -23.277 0.596 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.241 5.241 14 C -0.071 4.071 15 C -0.159 4.159 16 C 0.040 3.960 17 N -0.364 5.364 18 C 0.384 3.616 19 O -0.388 6.388 20 C -0.426 4.426 21 C -0.092 4.092 22 N -0.115 5.115 23 N -0.237 5.237 24 S 0.557 5.443 25 C -0.160 4.160 26 C -0.073 4.073 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.941 -23.772 1.508 24.810 hybrid contribution -1.316 1.168 -1.434 2.270 sum 5.625 -22.603 0.075 23.293 Atomic orbital electron populations 1.69604 1.05920 1.28254 1.50536 1.25262 0.95639 0.99721 0.97340 0.85921 0.78761 0.80491 0.79062 1.19926 1.21003 1.19906 1.19639 0.93315 0.82214 1.47676 0.87974 1.41865 1.09195 1.04597 1.64384 1.19734 0.88416 0.84546 0.84463 1.90479 1.13686 1.86868 1.55158 1.21832 0.93905 0.91161 1.01580 1.61533 1.25111 1.01336 1.36134 1.22024 0.94837 0.89110 1.01103 1.21851 0.98241 0.98623 0.97222 1.21276 0.88401 0.86954 0.99373 1.46005 1.41583 1.40572 1.08245 1.16477 0.80189 0.79760 0.85220 1.90882 1.59864 1.63248 1.24800 1.28128 1.08183 1.08176 0.98127 1.24511 0.90844 0.90687 1.03182 1.70714 1.17993 1.20015 1.02795 1.78908 1.20812 1.19378 1.04555 1.82620 1.22840 1.23798 1.15045 1.21946 0.98778 0.92607 1.02718 1.22215 0.94948 1.01308 0.88807 0.91831 0.77493 0.93414 0.89277 0.94863 0.90116 0.90947 0.90109 0.89182 0.76664 0.76672 0.90491 0.91210 0.95708 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 10 C 0.44 10.07 7.46 -10.99 -0.08 9.99 16 11 O -0.58 -14.96 13.90 5.55 0.08 -14.88 16 12 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 13 N -0.52 -7.86 4.40 -236.11 -1.04 -8.90 16 14 C 0.06 0.64 5.46 -3.84 -0.02 0.62 16 15 C -0.12 -1.05 5.57 -26.65 -0.15 -1.20 16 16 C 0.14 1.44 2.52 -67.81 -0.17 1.27 16 17 N -0.71 -5.81 5.08 -54.84 -0.28 -6.09 16 18 C 0.60 5.87 7.77 -12.63 -0.10 5.77 16 19 O -0.51 -6.81 16.65 5.26 0.09 -6.72 16 20 C -0.28 -2.26 6.81 -35.95 -0.25 -2.51 16 21 C 0.07 0.61 11.55 -17.80 -0.21 0.40 16 22 N -0.25 -2.43 11.54 30.36 0.35 -2.08 16 23 N -0.26 -2.34 12.51 60.35 0.75 -1.59 16 24 S 0.42 2.57 23.05 -107.50 -2.48 0.09 16 25 C -0.12 -1.56 5.67 -26.64 -0.15 -1.71 16 26 C 0.06 0.86 5.10 -3.83 -0.02 0.84 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 29 H 0.05 0.75 8.12 -51.92 -0.42 0.32 16 30 H 0.09 1.34 7.99 -51.93 -0.41 0.92 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 36 H 0.40 2.18 8.03 -40.82 -0.33 1.85 16 37 H 0.22 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 2.09 5.78 -51.93 -0.30 1.79 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -33.11 360.67 -7.92 -41.03 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.07 Total: 8.99 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.41 Total: 6.39 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.45 Total: -56.13 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.16 Total: -21.61 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.48 Total: 0.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.11 -7.92 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226259319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.495 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds