Wall clock time and date at job start Tue Mar 31 2020 22:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47400 * 240.00279 * 3 2 1 5 5 H 1.48507 * 109.46835 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47058 * 120.00056 * 3 2 1 7 7 C 1.38955 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99724 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99957 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00132 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99776 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47291 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00381 * 170.00059 * 13 12 10 15 15 C 1.53030 * 109.52528 * 185.83913 * 14 13 12 16 16 C 1.53119 * 109.28168 * 300.81826 * 15 14 13 17 17 N 1.46499 * 109.52531 * 177.55929 * 16 15 14 18 18 C 1.34777 * 119.99665 * 155.40632 * 17 16 15 19 19 O 1.21623 * 120.00244 * 359.72094 * 18 17 16 20 20 C 1.47169 * 119.99709 * 179.72413 * 18 17 16 21 21 C 1.38247 * 128.47463 * 179.97438 * 20 18 17 22 22 N 1.31238 * 111.88765 * 180.02562 * 21 20 18 23 23 N 1.27340 * 120.03995 * 359.97438 * 22 21 20 24 24 S 1.56637 * 109.73894 * 359.69748 * 23 22 21 25 25 C 1.53122 * 109.20839 * 57.62184 * 16 15 14 26 26 C 1.46849 * 110.99599 * 294.21017 * 13 12 10 27 27 H 0.96997 * 119.99721 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99406 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.47172 * 59.99751 * 12 10 9 30 30 H 1.09002 * 109.46905 * 300.00131 * 12 10 9 31 31 H 1.09000 * 109.46548 * 65.82103 * 14 13 12 32 32 H 1.09003 * 109.44890 * 305.85037 * 14 13 12 33 33 H 1.09000 * 109.50480 * 180.87602 * 15 14 13 34 34 H 1.09005 * 109.50588 * 60.76135 * 15 14 13 35 35 H 1.09004 * 109.52333 * 297.69124 * 16 15 14 36 36 H 0.97001 * 119.99790 * 335.12345 * 17 16 15 37 37 H 1.07992 * 124.05656 * 0.02562 * 21 20 18 38 38 H 1.08997 * 109.50697 * 62.32004 * 25 16 15 39 39 H 1.09009 * 109.50224 * 182.43989 * 25 16 15 40 40 H 1.08992 * 109.46206 * 294.17120 * 26 13 12 41 41 H 1.08998 * 109.46222 * 54.15899 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.5141 -7.2570 0.2358 15 6 2.5506 -8.3744 0.3735 16 6 3.3844 -8.4513 -0.9085 17 7 4.4164 -9.4805 -0.7603 18 6 4.9334 -10.0784 -1.8519 19 8 4.5396 -9.7672 -2.9598 20 6 5.9745 -11.1080 -1.7034 21 6 6.6200 -11.8273 -2.6918 22 7 7.4965 -12.6669 -2.1927 23 7 7.6637 -12.7395 -0.9324 24 16 6.7132 -11.7233 -0.2132 25 6 4.0474 -7.0943 -1.1604 26 6 2.9676 -6.0136 -1.2520 27 1 -0.4849 0.8400 0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6174 -4.9205 -0.8914 30 1 0.6168 -4.9209 0.8886 31 1 0.8529 -7.4762 -0.6025 32 1 0.9283 -7.1900 1.1526 33 1 2.0418 -9.3249 0.5342 34 1 3.2036 -8.1629 1.2202 35 1 2.7376 -8.7024 -1.7492 36 1 4.7305 -9.7287 0.1233 37 1 6.4263 -11.7122 -3.7480 38 1 4.7246 -6.8619 -0.3385 39 1 4.6074 -7.1307 -2.0949 40 1 2.2996 -6.2386 -2.0833 41 1 3.4375 -5.0438 -1.4158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226259319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:46 Heat of formation + Delta-G solvation = -16.307804 kcal Electronic energy + Delta-G solvation = -26141.313382 eV Core-core repulsion = 22182.908964 eV Total energy + Delta-G solvation = -3958.404417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95817 -41.14777 -40.34674 -39.00123 -36.31369 -35.74678 -33.60403 -33.24071 -32.48101 -31.79344 -29.16315 -28.23986 -26.38186 -24.70153 -24.21746 -23.15457 -21.78627 -21.06629 -20.90537 -20.23925 -19.84552 -18.61739 -17.68183 -17.45996 -17.02932 -16.76634 -16.51463 -16.32657 -16.00166 -15.86712 -15.55613 -15.34453 -15.31064 -14.87960 -14.40197 -14.31726 -13.84597 -13.75539 -13.47830 -13.17011 -13.05025 -12.91617 -12.77406 -12.42761 -12.33390 -12.15739 -12.10596 -11.87180 -11.61579 -11.45068 -11.41750 -11.21519 -11.19659 -10.93769 -10.33476 -10.13613 -9.96163 -9.16195 -8.44234 -5.92305 -1.38550 -0.26780 0.39712 0.85163 1.40585 1.42305 1.52883 1.76588 1.83553 2.09482 2.29883 2.79954 2.93245 3.22885 3.41651 3.52384 3.61932 3.78556 3.87178 4.08373 4.22360 4.33411 4.39558 4.50044 4.53953 4.55643 4.59353 4.63898 4.79132 4.91416 5.02084 5.07973 5.15717 5.26816 5.38937 5.43001 5.91545 6.10118 6.25058 6.29331 6.54341 6.63937 6.90913 7.16023 7.60491 8.16521 8.72873 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.001911 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.806127 B =14645.095799 C =15039.428244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.058 3.942 13 N -0.531 5.531 14 C 0.054 3.946 15 C -0.112 4.112 16 C 0.152 3.848 17 N -0.700 5.700 18 C 0.605 3.395 19 O -0.552 6.552 20 C -0.303 4.303 21 C 0.076 3.924 22 N -0.278 5.278 23 N -0.290 5.290 24 S 0.513 5.487 25 C -0.113 4.113 26 C 0.059 3.941 27 H 0.277 0.723 28 H 0.396 0.604 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.415 0.585 37 H 0.228 0.772 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.029 0.971 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -24.709 2.019 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.074 4.074 15 C -0.150 4.150 16 C 0.048 3.952 17 N -0.352 5.352 18 C 0.389 3.611 19 O -0.431 6.431 20 C -0.444 4.444 21 C -0.092 4.092 22 N -0.140 5.140 23 N -0.271 5.271 24 S 0.647 5.353 25 C -0.152 4.152 26 C -0.069 4.069 27 H 0.086 0.914 28 H 0.229 0.771 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.252 0.748 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.257 -25.246 2.969 26.179 hybrid contribution -1.080 1.577 -1.809 2.631 sum 5.178 -23.670 1.160 24.257 Atomic orbital electron populations 1.69665 1.06748 1.29232 1.50536 1.26011 0.96548 1.02335 0.96507 0.85017 0.77762 0.76855 0.78877 1.19890 1.19592 1.19702 1.19594 0.92631 0.84040 1.49724 0.90381 1.41943 1.09301 1.04716 1.65407 1.20843 0.88355 0.85990 0.82011 1.90460 1.15696 1.87759 1.56013 1.21723 0.93621 0.88478 1.03524 1.61514 1.25554 1.02843 1.35708 1.22214 0.95566 0.87275 1.02305 1.21840 0.97722 0.99321 0.96158 1.21070 0.88456 0.85505 1.00194 1.45818 1.40939 1.39616 1.08782 1.16627 0.80025 0.79672 0.84819 1.90866 1.61256 1.64616 1.26327 1.27972 1.08395 1.08315 0.99756 1.24744 0.90341 0.90198 1.03957 1.70777 1.19024 1.21089 1.03141 1.78651 1.22483 1.21129 1.04875 1.82227 1.19922 1.20854 1.12249 1.21822 0.97862 0.93768 1.01798 1.22017 0.95618 0.99772 0.89500 0.91394 0.77052 0.91806 0.86658 0.93898 0.88256 0.87554 0.89558 0.89980 0.74800 0.75623 0.91246 0.92452 0.95312 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.58 -29.09 5.29 -306.99 -1.62 -30.71 16 10 C 0.44 20.40 7.46 87.66 0.65 21.06 16 11 O -0.61 -32.96 13.90 -3.04 -0.04 -33.00 16 12 C 0.06 1.88 5.45 85.56 0.47 2.34 16 13 N -0.53 -15.48 4.40 -900.92 -3.96 -19.44 16 14 C 0.05 1.01 5.46 86.32 0.47 1.48 16 15 C -0.11 -1.55 5.57 30.64 0.17 -1.38 16 16 C 0.15 2.75 2.52 45.07 0.11 2.86 16 17 N -0.70 -9.84 5.08 -445.67 -2.26 -12.10 16 18 C 0.60 11.02 7.77 86.59 0.67 11.70 16 19 O -0.55 -14.50 16.65 -4.10 -0.07 -14.57 16 20 C -0.30 -4.36 6.81 24.62 0.17 -4.19 16 21 C 0.08 1.17 11.55 84.78 0.98 2.15 16 22 N -0.28 -5.16 11.54 -57.87 -0.67 -5.83 16 23 N -0.29 -4.92 12.51 37.02 0.46 -4.46 16 24 S 0.51 4.99 23.05 -56.49 -1.30 3.69 16 25 C -0.11 -2.89 5.67 30.65 0.17 -2.71 16 26 C 0.06 1.86 5.10 86.33 0.44 2.30 16 27 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 29 H 0.06 1.90 8.12 -2.38 -0.02 1.88 16 30 H 0.12 3.18 7.99 -2.39 -0.02 3.16 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.54 8.02 -2.39 -0.02 1.53 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 1.70 7.58 -2.38 -0.02 1.68 16 36 H 0.41 3.17 8.03 -92.71 -0.74 2.42 16 37 H 0.23 2.73 8.06 -2.91 -0.02 2.70 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 2.50 5.78 -2.39 -0.01 2.49 16 Total: -1.00 -74.58 360.67 -1.94 -76.52 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.38 Total: 26.60 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 5.59 Total: 17.55 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -7.77 Total: -121.65 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -0.11 Total: -47.57 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.30 Total: 3.69 kcal Total: -74.58 -1.94 -76.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226259319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.214 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds