Wall clock time and date at job start Tue Mar 31 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86808 * 119.99897 * 2 1 4 4 H 1.48493 * 109.47261 * 274.98001 * 3 2 1 5 5 H 1.48498 * 109.47044 * 34.98136 * 3 2 1 6 6 H 1.48503 * 109.47030 * 154.97754 * 3 2 1 7 7 C 1.40030 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99678 * 173.66186 * 7 2 1 9 9 C 1.41334 * 120.00102 * 353.65953 * 7 2 1 10 10 C 1.40623 * 119.78728 * 186.34356 * 9 7 2 11 11 C 1.38307 * 119.13463 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.67008 * 359.74436 * 11 10 9 13 13 C 1.39666 * 119.49685 * 0.49436 * 12 11 10 14 14 N 1.39113 * 119.58280 * 179.76579 * 13 12 11 15 15 C 1.34775 * 119.99875 * 341.03639 * 14 13 12 16 16 O 1.21360 * 120.00096 * 354.38985 * 15 14 13 17 17 C 1.49368 * 120.00332 * 174.39325 * 15 14 13 18 18 O 1.21360 * 119.99572 * 359.97438 * 17 15 14 19 19 N 1.34769 * 120.00277 * 179.97438 * 17 15 14 20 20 C 1.46504 * 120.00151 * 179.97438 * 19 17 15 21 21 C 1.52994 * 109.47361 * 180.02562 * 20 19 17 22 22 C 1.53784 * 113.61599 * 185.00043 * 21 20 19 23 23 C 1.53780 * 87.17067 * 220.05863 * 22 21 20 24 24 F 1.39904 * 113.61086 * 139.93705 * 23 22 21 25 25 F 1.39899 * 113.61443 * 270.83921 * 23 22 21 26 26 C 1.53774 * 87.08366 * 25.38945 * 23 22 21 27 27 N 1.31968 * 120.84011 * 359.49896 * 13 12 11 28 28 H 0.96996 * 119.99807 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.43235 * 359.97438 * 10 9 7 30 30 H 1.08005 * 120.66307 * 180.02562 * 11 10 9 31 31 H 1.08005 * 120.25454 * 180.26562 * 12 11 10 32 32 H 0.96997 * 120.00134 * 161.02651 * 14 13 12 33 33 H 0.96999 * 120.00323 * 0.02562 * 19 17 15 34 34 H 1.09001 * 109.46931 * 60.00351 * 20 19 17 35 35 H 1.08998 * 109.47148 * 300.00381 * 20 19 17 36 36 H 1.09002 * 112.90865 * 316.24871 * 21 20 19 37 37 H 1.08998 * 113.61011 * 105.46996 * 22 21 20 38 38 H 1.08996 * 113.61040 * 334.65509 * 22 21 20 39 39 H 1.09006 * 113.61695 * 89.11200 * 26 23 22 40 40 H 1.08999 * 113.61401 * 219.92963 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3837 2.1073 -1.3947 5 1 1.4955 2.6200 0.8027 6 1 3.5877 1.4122 0.5922 7 6 2.0076 -1.2127 0.0005 8 1 3.0827 -1.2155 -0.1027 9 6 1.3075 -2.4329 0.1363 10 6 2.0216 -3.6368 0.2707 11 6 1.3228 -4.8231 0.4020 12 6 -0.0635 -4.7823 0.4020 13 6 -0.7153 -3.5553 0.2598 14 7 -2.1058 -3.5129 0.2546 15 6 -2.8132 -4.6319 0.0021 16 8 -2.2404 -5.6520 -0.3206 17 6 -4.3022 -4.6167 0.1192 18 8 -4.8750 -3.5967 0.4422 19 7 -5.0096 -5.7356 -0.1338 20 6 -6.4700 -5.7208 -0.0184 21 6 -7.0224 -7.1070 -0.3559 22 6 -8.5588 -7.1681 -0.3831 23 6 -8.4405 -8.5380 0.3054 24 9 -9.4028 -8.7510 1.2984 25 9 -8.3357 -9.6079 -0.5898 26 6 -7.0861 -8.0581 0.8531 27 7 -0.0290 -2.4350 0.1357 28 1 -0.4850 0.8400 -0.0004 29 1 3.1016 -3.6352 0.2704 30 1 1.8463 -5.7620 0.5072 31 1 -0.6347 -5.6929 0.5073 32 1 -2.5662 -2.6780 0.4328 33 1 -4.5517 -6.5509 -0.3916 34 1 -6.8817 -4.9867 -0.7110 35 1 -6.7512 -5.4563 1.0010 36 1 -6.5523 -7.5487 -1.2345 37 1 -8.9759 -7.2194 -1.3888 38 1 -9.0369 -6.4084 0.2352 39 1 -7.1604 -7.5413 1.8100 40 1 -6.3149 -8.8283 0.8468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262084830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:29 Heat of formation + Delta-G solvation = -119.545996 kcal Electronic energy + Delta-G solvation = -27866.141560 eV Core-core repulsion = 23317.127261 eV Total energy + Delta-G solvation = -4549.014299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.80526 -48.16245 -42.08721 -40.55350 -39.47060 -39.00767 -36.43962 -35.48025 -35.00034 -32.38212 -31.28388 -29.58592 -27.61163 -27.21514 -26.02700 -23.83434 -23.54873 -22.79298 -21.59559 -20.94073 -19.86765 -19.35228 -18.50592 -18.11653 -17.70467 -17.51389 -17.30439 -17.19273 -16.71874 -16.51899 -16.40974 -16.07772 -15.45381 -15.31986 -15.04562 -15.02289 -14.66179 -14.47100 -14.33449 -14.16819 -13.89176 -13.82528 -13.51060 -13.23963 -12.94780 -12.74810 -12.62598 -12.51165 -12.19296 -12.16597 -12.10123 -11.85987 -11.67280 -11.38081 -11.07311 -10.58194 -10.34621 -10.02929 -9.68326 -9.09034 -8.33290 -6.52894 0.04869 0.92260 1.12722 1.18740 1.43057 1.53550 1.58637 2.08142 2.23801 2.48802 2.51644 2.84610 2.85422 3.23968 3.26878 3.32493 3.45546 3.87509 4.02821 4.23288 4.30385 4.42536 4.53381 4.54289 4.64360 4.70052 4.78301 4.82482 4.83899 4.86291 4.88202 5.06014 5.21236 5.25923 5.51405 5.56349 5.81001 5.89670 6.09274 6.19725 6.35289 6.65230 6.73815 6.83604 6.97012 8.04957 8.43018 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025767 B = 0.001976 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.390206 B =14165.674469 C =15019.328368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.024 3.976 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.463 4.463 8 H 0.095 0.905 9 C 0.243 3.757 10 C -0.299 4.299 11 C -0.046 4.046 12 C -0.319 4.319 13 C 0.338 3.662 14 N -0.619 5.619 15 C 0.505 3.495 16 O -0.514 6.514 17 C 0.523 3.477 18 O -0.536 6.536 19 N -0.681 5.681 20 C 0.129 3.871 21 C -0.110 4.110 22 C -0.144 4.144 23 C 0.238 3.762 24 F -0.204 7.204 25 F -0.192 7.192 26 C -0.161 4.161 27 N -0.533 5.533 28 H 0.280 0.720 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.419 0.581 33 H 0.422 0.578 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.512 -11.694 -0.016 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.113 0.887 9 C 0.116 3.884 10 C -0.321 4.321 11 C -0.070 4.070 12 C -0.343 4.343 13 C 0.104 3.896 14 N -0.264 5.264 15 C 0.287 3.713 16 O -0.389 6.389 17 C 0.303 3.697 18 O -0.413 6.413 19 N -0.335 5.335 20 C 0.007 3.993 21 C -0.128 4.128 22 C -0.182 4.182 23 C 0.202 3.798 24 F -0.185 7.185 25 F -0.173 7.173 26 C -0.199 4.199 27 N -0.253 5.253 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.257 0.743 33 H 0.260 0.740 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.240 -10.846 -0.089 20.368 hybrid contribution 0.685 -0.298 0.051 0.748 sum -16.555 -11.144 -0.038 19.956 Atomic orbital electron populations 1.70193 1.08905 1.29207 1.29354 1.27003 0.95743 1.04592 0.92432 0.85099 0.79151 0.75670 0.79210 1.18876 1.19427 1.17748 1.19976 0.95354 0.90172 1.43952 0.88715 1.18721 0.86875 0.93642 0.89139 1.21958 0.99810 0.93579 1.16799 1.21215 0.93494 0.97710 0.94614 1.21812 0.95354 0.97663 1.19519 1.18803 0.83728 0.91613 0.95464 1.42930 1.04718 1.13067 1.65704 1.20478 0.89186 0.83361 0.78276 1.90651 1.71305 1.32147 1.44812 1.19501 0.86510 0.84805 0.78934 1.90791 1.71280 1.32502 1.46761 1.45648 1.08421 1.12438 1.66981 1.21604 0.76871 0.97235 1.03600 1.22609 0.96236 0.94438 0.99560 1.24083 0.96296 0.93452 1.04347 1.22438 0.89907 0.85595 0.81891 1.92996 1.66879 1.96044 1.62544 1.93004 1.96397 1.59562 1.68330 1.24349 0.94382 1.00300 1.00835 1.68037 1.08984 1.25851 1.22409 0.90984 0.86473 0.84429 0.84104 0.74303 0.73968 0.89500 0.89587 0.85938 0.87251 0.85099 0.85779 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.98 11.49 21.84 0.25 -39.73 16 2 C 0.02 1.22 5.49 85.29 0.47 1.68 16 3 Si 0.99 37.45 29.56 68.60 2.03 39.48 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.46 -24.71 9.13 23.47 0.21 -24.50 16 8 H 0.09 4.68 7.86 -2.91 -0.02 4.66 16 9 C 0.24 13.42 6.54 40.21 0.26 13.68 16 10 C -0.30 -14.61 9.83 22.87 0.22 -14.38 16 11 C -0.05 -2.05 10.15 22.39 0.23 -1.82 16 12 C -0.32 -14.81 8.83 22.72 0.20 -14.61 16 13 C 0.34 16.79 7.50 133.28 1.00 17.79 16 14 N -0.62 -25.83 5.39 -309.71 -1.67 -27.50 16 15 C 0.51 17.72 7.73 87.24 0.67 18.40 16 16 O -0.51 -18.96 13.28 -3.28 -0.04 -19.00 16 17 C 0.52 14.46 7.89 87.24 0.69 15.15 16 18 O -0.54 -17.17 16.48 -3.28 -0.05 -17.23 16 19 N -0.68 -12.26 5.55 -464.50 -2.58 -14.84 16 20 C 0.13 1.53 5.51 86.38 0.48 2.01 16 21 C -0.11 -0.84 3.74 -10.21 -0.04 -0.88 16 22 C -0.14 -0.99 7.42 31.12 0.23 -0.76 16 23 C 0.24 2.88 3.28 31.12 0.10 2.98 16 24 F -0.20 -3.33 17.41 44.97 0.78 -2.55 16 25 F -0.19 -3.08 17.38 44.97 0.78 -2.30 16 26 C -0.16 -1.41 7.43 31.18 0.23 -1.18 16 27 N -0.53 -29.64 7.92 -186.44 -1.48 -31.11 16 28 H 0.28 13.38 8.29 -92.71 -0.77 12.61 16 29 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 30 H 0.14 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.14 6.15 5.34 -3.14 -0.02 6.13 16 32 H 0.42 17.28 8.31 -92.71 -0.77 16.51 16 33 H 0.42 6.50 7.94 -92.71 -0.74 5.76 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.00 7.84 -2.39 -0.02 0.99 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.13 0.59 8.10 -2.39 -0.02 0.57 16 39 H 0.12 0.92 7.90 -2.38 -0.02 0.90 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.01 356.52 2.61 -66.40 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.38 Total: 34.83 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 4.96 Total: 13.56 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.47 Total: -113.19 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.10 Total: -36.23 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 1.56 Total: -4.85 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -69.01 2.61 -66.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262084830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.149 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds