Wall clock time and date at job start Tue Mar 31 2020 22:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.54985 * 2 1 4 4 N 1.46509 * 109.46922 * 56.13711 * 3 2 1 5 5 C 1.34772 * 119.99734 * 185.12095 * 4 3 2 6 6 O 1.21354 * 120.00374 * 0.02562 * 5 4 3 7 7 C 1.49371 * 120.00018 * 179.97438 * 5 4 3 8 8 O 1.21364 * 119.99431 * 359.97438 * 7 5 4 9 9 N 1.34765 * 120.00313 * 179.97438 * 7 5 4 10 10 C 1.39115 * 120.00286 * 185.05250 * 9 7 5 11 11 C 1.39712 * 119.57944 * 174.55117 * 10 9 7 12 12 C 1.38655 * 119.49294 * 179.97438 * 11 10 9 13 13 C 1.38347 * 118.66837 * 359.73162 * 12 11 10 14 14 C 1.40592 * 119.13815 * 0.53071 * 13 12 11 15 15 C 1.41339 * 119.78935 * 179.73226 * 14 13 12 16 16 H 1.08003 * 119.99756 * 359.72629 * 15 14 13 17 17 C 1.40030 * 120.00159 * 179.45431 * 15 14 13 18 18 N 1.30740 * 119.99903 * 0.27527 * 17 15 14 19 19 Si 1.86806 * 119.99786 * 180.27466 * 17 15 14 20 20 H 1.48496 * 109.47116 * 59.99985 * 19 17 15 21 21 H 1.48495 * 109.46838 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46726 * 299.99684 * 19 17 15 23 23 N 1.31933 * 119.57536 * 354.53237 * 10 9 7 24 24 C 1.53001 * 117.49652 * 214.33192 * 2 1 3 25 25 C 1.53001 * 117.49838 * 145.67423 * 2 1 3 26 26 F 1.39894 * 117.49778 * 215.00448 * 25 2 1 27 27 F 1.39906 * 117.49938 * 359.97438 * 25 2 1 28 28 H 1.09000 * 109.47177 * 54.92099 * 1 2 3 29 29 H 1.09003 * 109.47514 * 174.92455 * 1 2 3 30 30 H 1.09006 * 109.47064 * 294.92173 * 1 2 3 31 31 H 1.09001 * 109.47508 * 296.13487 * 3 2 1 32 32 H 1.08998 * 109.47303 * 176.13141 * 3 2 1 33 33 H 0.97001 * 119.99667 * 5.11944 * 4 3 2 34 34 H 0.96999 * 120.00268 * 5.05578 * 9 7 5 35 35 H 1.08001 * 120.25161 * 0.02562 * 11 10 9 36 36 H 1.07997 * 120.66576 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.43153 * 180.28864 * 13 12 11 38 38 H 0.96999 * 119.99637 * 180.02562 * 18 17 15 39 39 H 1.09000 * 117.49952 * 359.97438 * 24 2 1 40 40 H 1.08997 * 117.49653 * 144.99766 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.7061 2.1529 1.1470 5 6 2.0731 3.4412 1.2947 6 8 2.8038 3.9616 0.4775 7 6 1.5794 4.2291 2.4638 8 8 0.8474 3.7090 3.2804 9 7 1.9467 5.5172 2.6119 10 6 1.5740 6.2201 3.7531 11 6 2.0541 7.5170 3.9518 12 6 1.6810 8.2161 5.0896 13 6 0.8340 7.6045 5.9965 14 6 0.3894 6.2952 5.7425 15 6 -0.4717 5.6551 6.6626 16 1 -0.7825 6.1702 7.5595 17 6 -0.9265 4.3553 6.4084 18 7 -0.5502 3.7318 5.3226 19 14 -2.0707 3.5124 7.6207 20 1 -3.3170 4.3077 7.7602 21 1 -2.4033 2.1530 7.1243 22 1 -1.4007 3.4062 8.9418 23 7 0.7713 5.6536 4.6337 24 6 2.2364 -1.1207 -0.7654 25 6 2.2365 -1.1208 0.7653 26 9 3.4363 -0.8050 1.4116 27 9 1.4340 -2.0669 1.4120 28 1 -0.3633 0.5906 -0.8410 29 1 -0.3634 -1.0236 -0.0909 30 1 -0.3633 0.4331 0.9320 31 1 1.9382 1.9034 -0.9226 32 1 3.2716 1.2660 0.0693 33 1 1.1217 1.7370 1.8000 34 1 2.4709 5.9544 1.9227 35 1 2.7101 7.9718 3.2243 36 1 2.0413 9.2195 5.2624 37 1 0.5216 8.1246 6.8899 38 1 -0.8655 2.8316 5.1464 39 1 1.6112 -1.8583 -1.2686 40 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262085379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:16 Heat of formation + Delta-G solvation = -75.518515 kcal Electronic energy + Delta-G solvation = -29166.058675 eV Core-core repulsion = 24618.953551 eV Total energy + Delta-G solvation = -4547.105124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.91734 -47.58735 -40.29136 -38.85378 -37.92644 -37.16342 -34.69693 -33.85546 -33.01394 -30.39024 -29.27708 -29.05084 -27.52482 -25.70653 -24.00620 -22.97535 -21.69127 -21.06595 -20.35334 -19.55204 -18.43090 -17.93261 -17.29862 -16.74307 -16.52312 -16.23595 -15.89120 -15.47444 -14.98368 -14.71969 -14.49158 -14.25464 -14.16999 -14.03968 -13.79659 -13.73524 -13.56096 -13.40038 -13.27472 -12.87806 -12.84654 -12.64264 -12.04672 -11.99802 -11.83913 -11.19168 -11.18218 -11.02444 -10.98214 -10.70980 -10.52181 -10.11764 -10.00111 -9.80540 -9.24910 -9.09805 -9.03693 -8.04128 -7.34449 -7.07115 -6.22563 -4.45859 1.87182 2.43969 2.67491 2.81430 2.85682 3.08090 3.12964 3.15193 3.23940 3.73122 3.80818 3.94048 4.01576 4.10820 4.27921 4.31049 4.86129 4.90674 4.98733 5.00646 5.22117 5.34239 5.35072 5.40499 5.47321 5.79141 5.96160 6.05836 6.19486 6.42373 6.56416 6.74160 6.78998 7.14331 7.20429 7.46763 7.51716 7.75567 7.85665 8.01272 8.13964 8.35503 8.61517 8.91969 9.00486 10.13653 10.40852 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.003514 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.188703 B = 7965.498511 C = 9857.285879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 C 0.154 3.846 4 N -0.704 5.704 5 C 0.512 3.488 6 O -0.532 6.532 7 C 0.467 3.533 8 O -0.386 6.386 9 N -0.638 5.638 10 C 0.368 3.632 11 C -0.349 4.349 12 C -0.036 4.036 13 C -0.301 4.301 14 C 0.271 3.729 15 C -0.424 4.424 16 H 0.083 0.917 17 C 0.060 3.940 18 N -0.663 5.663 19 Si 0.898 3.102 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.267 1.267 23 N -0.475 5.475 24 C -0.158 4.158 25 C 0.201 3.799 26 F -0.155 7.155 27 F -0.157 7.157 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.411 0.589 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -10.389 -13.048 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.030 3.970 4 N -0.358 5.358 5 C 0.293 3.707 6 O -0.409 6.409 7 C 0.243 3.757 8 O -0.248 6.248 9 N -0.286 5.286 10 C 0.130 3.870 11 C -0.374 4.374 12 C -0.060 4.060 13 C -0.324 4.324 14 C 0.146 3.854 15 C -0.454 4.454 16 H 0.101 0.899 17 C -0.169 4.169 18 N -0.282 5.282 19 Si 0.722 3.278 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 N -0.194 5.194 24 C -0.196 4.196 25 C 0.164 3.836 26 F -0.136 7.136 27 F -0.137 7.137 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.252 0.748 34 H 0.247 0.753 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.409 -11.574 -13.240 17.749 hybrid contribution 0.033 0.348 0.756 0.833 sum 2.442 -11.226 -12.483 16.965 Atomic orbital electron populations 1.21388 0.89110 1.03427 1.04019 1.23160 0.97968 0.91825 1.01239 1.20845 0.98481 0.87318 0.90330 1.45627 1.51453 1.11369 1.27399 1.20830 0.80689 0.82439 0.86726 1.90700 1.35952 1.70155 1.44091 1.20057 0.84711 0.83854 0.87054 1.91219 1.27540 1.67597 1.38465 1.42975 1.53921 1.10833 1.20919 1.18539 0.93245 0.87909 0.87305 1.20512 1.16093 0.96940 1.03899 1.20585 0.95170 0.97080 0.93180 1.21651 1.09262 0.98850 1.02610 1.18355 0.90069 0.87952 0.88986 1.19562 1.22800 0.98245 1.04826 0.89876 1.26155 0.96895 0.97936 0.95892 1.70289 1.28650 1.10125 1.19111 0.86547 0.81073 0.78702 0.81450 1.19133 1.20360 1.19130 1.68642 1.13960 1.33697 1.03089 1.24464 1.04242 0.99712 0.91174 1.20130 0.81098 0.93681 0.88705 1.93055 1.44475 1.92566 1.83458 1.93036 1.72151 1.65044 1.83499 0.90298 0.91132 0.90564 0.89091 0.90292 0.74756 0.75300 0.88713 0.88353 0.88372 0.91612 0.85433 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.18 37.16 0.34 -0.60 16 2 C -0.14 -1.17 2.24 -154.51 -0.35 -1.52 16 3 C 0.15 1.58 5.39 -4.04 -0.02 1.56 16 4 N -0.70 -9.51 5.36 -60.76 -0.33 -9.84 16 5 C 0.51 8.57 7.89 -11.62 -0.09 8.48 16 6 O -0.53 -9.37 16.48 5.49 0.09 -9.28 16 7 C 0.47 9.54 7.84 -11.63 -0.09 9.45 16 8 O -0.39 -9.10 12.24 5.49 0.07 -9.03 16 9 N -0.64 -13.17 5.37 -11.83 -0.06 -13.23 16 10 C 0.37 8.97 7.42 -155.09 -1.15 7.82 16 11 C -0.35 -7.83 9.96 -38.88 -0.39 -8.22 16 12 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 13 C -0.30 -7.43 9.83 -38.65 -0.38 -7.82 16 14 C 0.27 7.48 6.55 -85.00 -0.56 6.92 16 15 C -0.42 -11.38 9.14 -37.73 -0.34 -11.73 16 16 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 17 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 18 N -0.66 -17.58 8.99 55.55 0.50 -17.08 16 19 Si 0.90 18.74 29.56 -169.99 -5.02 13.72 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 N -0.47 -13.06 5.73 -10.27 -0.06 -13.12 16 24 C -0.16 -0.97 9.91 -26.69 -0.26 -1.23 16 25 C 0.20 1.99 5.14 -26.69 -0.14 1.85 16 26 F -0.16 -1.90 16.80 2.25 0.04 -1.86 16 27 F -0.16 -1.77 16.99 2.25 0.04 -1.73 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.47 7.88 -51.93 -0.41 0.07 16 30 H 0.08 0.68 7.38 -51.93 -0.38 0.30 16 31 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.08 0.84 7.62 -51.93 -0.40 0.44 16 33 H 0.42 5.66 7.11 -40.82 -0.29 5.37 16 34 H 0.41 7.24 8.18 -40.82 -0.33 6.91 16 35 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.27 6.70 8.29 -40.82 -0.34 6.36 16 39 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -32.16 356.01 -7.62 -39.78 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.32 Total: 11.11 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -3.93 Total: 5.20 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.05 Total: -53.27 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.60 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.16 -7.62 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262085379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.737 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds