Wall clock time and date at job start Tue Mar 31 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 115.54985 * 2 1 4 4 N 1.46509 * 109.46922 * 56.13711 * 3 2 1 5 5 C 1.34772 * 119.99734 * 185.12095 * 4 3 2 6 6 O 1.21354 * 120.00374 * 0.02562 * 5 4 3 7 7 C 1.49371 * 120.00018 * 179.97438 * 5 4 3 8 8 O 1.21364 * 119.99431 * 359.97438 * 7 5 4 9 9 N 1.34765 * 120.00313 * 179.97438 * 7 5 4 10 10 C 1.39115 * 120.00286 * 185.05250 * 9 7 5 11 11 C 1.39712 * 119.57944 * 174.55117 * 10 9 7 12 12 C 1.38655 * 119.49294 * 179.97438 * 11 10 9 13 13 C 1.38347 * 118.66837 * 359.73162 * 12 11 10 14 14 C 1.40592 * 119.13815 * 0.53071 * 13 12 11 15 15 C 1.41339 * 119.78935 * 179.73226 * 14 13 12 16 16 H 1.08003 * 119.99756 * 359.72629 * 15 14 13 17 17 C 1.40030 * 120.00159 * 179.45431 * 15 14 13 18 18 N 1.30740 * 119.99903 * 0.27527 * 17 15 14 19 19 Si 1.86806 * 119.99786 * 180.27466 * 17 15 14 20 20 H 1.48496 * 109.47116 * 59.99985 * 19 17 15 21 21 H 1.48495 * 109.46838 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46726 * 299.99684 * 19 17 15 23 23 N 1.31933 * 119.57536 * 354.53237 * 10 9 7 24 24 C 1.53001 * 117.49652 * 214.33192 * 2 1 3 25 25 C 1.53001 * 117.49838 * 145.67423 * 2 1 3 26 26 F 1.39894 * 117.49778 * 215.00448 * 25 2 1 27 27 F 1.39906 * 117.49938 * 359.97438 * 25 2 1 28 28 H 1.09000 * 109.47177 * 54.92099 * 1 2 3 29 29 H 1.09003 * 109.47514 * 174.92455 * 1 2 3 30 30 H 1.09006 * 109.47064 * 294.92173 * 1 2 3 31 31 H 1.09001 * 109.47508 * 296.13487 * 3 2 1 32 32 H 1.08998 * 109.47303 * 176.13141 * 3 2 1 33 33 H 0.97001 * 119.99667 * 5.11944 * 4 3 2 34 34 H 0.96999 * 120.00268 * 5.05578 * 9 7 5 35 35 H 1.08001 * 120.25161 * 0.02562 * 11 10 9 36 36 H 1.07997 * 120.66576 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.43153 * 180.28864 * 13 12 11 38 38 H 0.96999 * 119.99637 * 180.02562 * 18 17 15 39 39 H 1.09000 * 117.49952 * 359.97438 * 24 2 1 40 40 H 1.08997 * 117.49653 * 144.99766 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.7061 2.1529 1.1470 5 6 2.0731 3.4412 1.2947 6 8 2.8038 3.9616 0.4775 7 6 1.5794 4.2291 2.4638 8 8 0.8474 3.7090 3.2804 9 7 1.9467 5.5172 2.6119 10 6 1.5740 6.2201 3.7531 11 6 2.0541 7.5170 3.9518 12 6 1.6810 8.2161 5.0896 13 6 0.8340 7.6045 5.9965 14 6 0.3894 6.2952 5.7425 15 6 -0.4717 5.6551 6.6626 16 1 -0.7825 6.1702 7.5595 17 6 -0.9265 4.3553 6.4084 18 7 -0.5502 3.7318 5.3226 19 14 -2.0707 3.5124 7.6207 20 1 -3.3170 4.3077 7.7602 21 1 -2.4033 2.1530 7.1243 22 1 -1.4007 3.4062 8.9418 23 7 0.7713 5.6536 4.6337 24 6 2.2364 -1.1207 -0.7654 25 6 2.2365 -1.1208 0.7653 26 9 3.4363 -0.8050 1.4116 27 9 1.4340 -2.0669 1.4120 28 1 -0.3633 0.5906 -0.8410 29 1 -0.3634 -1.0236 -0.0909 30 1 -0.3633 0.4331 0.9320 31 1 1.9382 1.9034 -0.9226 32 1 3.2716 1.2660 0.0693 33 1 1.1217 1.7370 1.8000 34 1 2.4709 5.9544 1.9227 35 1 2.7101 7.9718 3.2243 36 1 2.0413 9.2195 5.2624 37 1 0.5216 8.1246 6.8899 38 1 -0.8655 2.8316 5.1464 39 1 1.6112 -1.8583 -1.2686 40 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262085379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:15 Heat of formation + Delta-G solvation = -96.164145 kcal Electronic energy + Delta-G solvation = -29166.953937 eV Core-core repulsion = 24618.953551 eV Total energy + Delta-G solvation = -4548.000386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.70860 -48.40359 -41.75068 -40.37914 -39.12011 -38.57921 -36.26328 -35.30515 -34.71456 -32.27257 -31.09595 -29.76397 -28.54431 -27.54759 -25.50348 -23.64395 -23.45959 -22.75758 -21.31246 -20.88241 -19.96631 -19.03630 -18.64339 -18.19621 -17.56105 -17.40736 -17.07254 -16.79751 -16.45648 -16.29076 -16.19352 -15.55908 -15.45500 -15.09620 -15.04563 -14.72481 -14.63510 -14.58802 -14.46001 -14.07813 -13.92584 -13.77241 -13.64931 -13.19686 -12.87602 -12.75385 -12.62397 -12.58391 -12.52983 -12.31765 -11.79720 -11.73510 -11.59989 -10.91786 -10.81825 -10.63711 -10.35468 -9.93904 -9.20578 -8.92593 -8.09303 -6.43201 0.35497 1.02711 1.26720 1.29880 1.41751 1.52326 1.55397 1.95979 2.06406 2.26819 2.36230 2.63803 2.97696 3.11841 3.19896 3.48420 3.57260 3.63638 4.01265 4.22261 4.32698 4.46770 4.58499 4.62305 4.67018 4.73828 4.79719 4.81737 4.84828 4.94158 4.98674 5.06019 5.19164 5.25508 5.62826 5.70578 5.88776 5.94565 6.12544 6.28101 6.51901 6.68681 6.81453 7.03351 7.28440 8.24853 8.54520 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.003514 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.188703 B = 7965.498511 C = 9857.285879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 C 0.151 3.849 4 N -0.691 5.691 5 C 0.522 3.478 6 O -0.540 6.540 7 C 0.459 3.541 8 O -0.421 6.421 9 N -0.632 5.632 10 C 0.347 3.653 11 C -0.342 4.342 12 C -0.033 4.033 13 C -0.322 4.322 14 C 0.237 3.763 15 C -0.462 4.462 16 H 0.087 0.913 17 C 0.015 3.985 18 N -0.694 5.694 19 Si 0.974 3.026 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.263 1.263 23 N -0.506 5.506 24 C -0.116 4.116 25 C 0.162 3.838 26 F -0.176 7.176 27 F -0.171 7.171 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.425 0.575 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.273 0.727 39 H 0.155 0.845 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -10.785 -14.780 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.028 3.972 4 N -0.344 5.344 5 C 0.303 3.697 6 O -0.418 6.418 7 C 0.237 3.763 8 O -0.286 6.286 9 N -0.282 5.282 10 C 0.109 3.891 11 C -0.367 4.367 12 C -0.057 4.057 13 C -0.345 4.345 14 C 0.112 3.888 15 C -0.493 4.493 16 H 0.106 0.894 17 C -0.210 4.210 18 N -0.313 5.313 19 Si 0.796 3.204 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.187 1.187 23 N -0.226 5.226 24 C -0.153 4.153 25 C 0.126 3.874 26 F -0.156 7.156 27 F -0.151 7.151 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.251 0.749 34 H 0.263 0.737 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.173 0.827 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.754 -11.972 -15.017 19.401 hybrid contribution 0.030 0.545 1.204 1.322 sum 2.784 -11.427 -13.813 18.142 Atomic orbital electron populations 1.21411 0.88650 1.04307 1.03552 1.23136 0.98232 0.90869 1.01928 1.21102 0.98641 0.88101 0.89326 1.45671 1.50315 1.10310 1.28086 1.20025 0.80970 0.83212 0.85501 1.90697 1.36580 1.70547 1.43979 1.20750 0.83946 0.83867 0.87746 1.91216 1.29021 1.68246 1.40086 1.42967 1.53797 1.11098 1.20317 1.19004 0.93118 0.89125 0.87889 1.20967 1.15272 0.96096 1.04370 1.21050 0.93789 0.98659 0.92227 1.21851 1.10384 0.98380 1.03900 1.18847 0.90937 0.89421 0.89613 1.19899 1.24297 0.99581 1.05525 0.89444 1.26973 0.98228 0.98117 0.97718 1.70448 1.29793 1.10316 1.20792 0.85387 0.78761 0.77549 0.78750 1.18484 1.19666 1.18741 1.68599 1.15274 1.34931 1.03818 1.24662 1.04831 0.97775 0.88053 1.20731 0.80901 0.94939 0.90842 1.93003 1.45624 1.92826 1.84167 1.92998 1.72503 1.65523 1.84085 0.88929 0.89943 0.92550 0.87505 0.90251 0.74871 0.73677 0.85174 0.84262 0.87364 0.91600 0.82725 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.18 71.98 0.66 -1.03 16 2 C -0.14 -2.08 2.24 -52.18 -0.12 -2.19 16 3 C 0.15 2.84 5.39 86.38 0.47 3.31 16 4 N -0.69 -18.44 5.36 -464.49 -2.49 -20.93 16 5 C 0.52 17.37 7.89 87.25 0.69 18.06 16 6 O -0.54 -18.40 16.48 -3.26 -0.05 -18.45 16 7 C 0.46 19.12 7.84 87.25 0.68 19.80 16 8 O -0.42 -20.66 12.24 -3.29 -0.04 -20.70 16 9 N -0.63 -26.15 5.37 -309.71 -1.66 -27.81 16 10 C 0.35 17.00 7.42 133.30 0.99 17.99 16 11 C -0.34 -14.82 9.96 22.73 0.23 -14.59 16 12 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 13 C -0.32 -16.04 9.83 22.87 0.22 -15.82 16 14 C 0.24 13.48 6.55 40.20 0.26 13.74 16 15 C -0.46 -25.73 9.14 23.47 0.21 -25.51 16 16 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 17 C 0.02 0.80 5.50 85.29 0.47 1.27 16 18 N -0.69 -38.28 8.99 21.84 0.20 -38.08 16 19 Si 0.97 39.48 29.56 68.60 2.03 41.51 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 N -0.51 -28.71 5.73 -186.42 -1.07 -29.78 16 24 C -0.12 -1.03 9.91 30.62 0.30 -0.73 16 25 C 0.16 3.04 5.14 30.62 0.16 3.20 16 26 F -0.18 -4.27 16.80 44.97 0.76 -3.52 16 27 F -0.17 -3.79 16.99 44.97 0.76 -3.02 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 0.95 7.88 -2.39 -0.02 0.93 16 30 H 0.06 1.01 7.38 -2.38 -0.02 0.99 16 31 H 0.11 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.08 1.55 7.62 -2.39 -0.02 1.53 16 33 H 0.41 11.54 7.11 -92.71 -0.66 10.88 16 34 H 0.42 14.62 8.18 -92.71 -0.76 13.86 16 35 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 38 H 0.27 14.01 8.29 -92.71 -0.77 13.24 16 39 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -72.76 356.01 3.59 -69.16 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.29 Total: 35.35 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.46 Total: 16.28 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.02 Total: -116.61 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.09 Total: -39.16 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 1.52 Total: -6.54 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -72.76 3.59 -69.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262085379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.001 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds