Wall clock time and date at job start Tue Mar 31 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 115.55229 * 2 1 4 4 N 1.46499 * 109.47206 * 303.91366 * 3 2 1 5 5 C 1.34780 * 120.00077 * 174.89679 * 4 3 2 6 6 O 1.21361 * 119.99711 * 359.97438 * 5 4 3 7 7 C 1.49365 * 119.99997 * 179.97438 * 5 4 3 8 8 O 1.21357 * 120.00279 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99997 * 180.02562 * 7 5 4 10 10 C 1.39110 * 119.99972 * 185.04670 * 9 7 5 11 11 C 1.39702 * 119.57710 * 174.56929 * 10 9 7 12 12 C 1.38653 * 119.49331 * 179.97438 * 11 10 9 13 13 C 1.38345 * 118.67317 * 359.97438 * 12 11 10 14 14 C 1.40596 * 119.13255 * 0.02562 * 13 12 11 15 15 C 1.41339 * 119.78331 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00209 * 359.97438 * 15 14 13 17 17 C 1.40037 * 119.99776 * 179.97438 * 15 14 13 18 18 N 1.30735 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46852 * 89.99530 * 19 17 15 21 21 H 1.48495 * 109.47350 * 209.99895 * 19 17 15 22 22 H 1.48499 * 109.46997 * 330.00086 * 19 17 15 23 23 N 1.31936 * 119.57742 * 354.28839 * 10 9 7 24 24 C 1.53000 * 117.49835 * 145.67479 * 2 1 3 25 25 C 1.53004 * 117.49579 * 214.32992 * 2 1 3 26 26 F 1.39903 * 117.50103 * 359.97438 * 25 2 1 27 27 F 1.39904 * 117.49320 * 144.97117 * 25 2 1 28 28 H 1.08999 * 109.46833 * 65.28381 * 1 2 3 29 29 H 1.09001 * 109.46964 * 185.28692 * 1 2 3 30 30 H 1.09005 * 109.46732 * 305.28385 * 1 2 3 31 31 H 1.08997 * 109.47432 * 183.90826 * 3 2 1 32 32 H 1.09003 * 109.47055 * 63.91010 * 3 2 1 33 33 H 0.96995 * 120.00236 * 354.89713 * 4 3 2 34 34 H 0.96996 * 119.99572 * 5.04782 * 9 7 5 35 35 H 1.07994 * 120.25645 * 0.02562 * 11 10 9 36 36 H 1.08006 * 120.66467 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.43879 * 180.02562 * 13 12 11 38 38 H 0.96998 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.49540 * 214.99964 * 24 2 1 40 40 H 1.08997 * 117.49933 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.7053 2.1533 -1.1462 5 6 2.0725 3.4417 -1.2940 6 8 2.8043 3.9615 -0.4772 7 6 1.5789 4.2296 -2.4629 8 8 0.8476 3.7096 -3.2800 9 7 1.9465 5.5178 -2.6109 10 6 1.4048 6.2819 -3.6395 11 6 1.7033 7.6445 -3.7171 12 6 1.1629 8.4043 -4.7432 13 6 0.3390 7.7841 -5.6655 14 6 0.0766 6.4092 -5.5332 15 6 -0.7627 5.7616 -6.4680 16 1 -1.2005 6.3228 -7.2803 17 6 -1.0267 4.3922 -6.3408 18 7 -0.4964 3.7128 -5.3578 19 14 -2.1366 3.5364 -7.5758 20 1 -1.3182 3.0210 -8.7027 21 1 -2.8349 2.4056 -6.9134 22 1 -3.1388 4.5023 -8.0932 23 7 0.6202 5.7094 -4.5324 24 6 2.2365 -1.1208 0.7653 25 6 2.2364 -1.1208 -0.7654 26 9 1.4339 -2.0675 -1.4112 27 9 3.4361 -0.8047 -1.4122 28 1 -0.3633 0.4297 -0.9335 29 1 -0.3633 -1.0233 0.0947 30 1 -0.3633 0.5936 0.8389 31 1 3.2716 1.2659 -0.0700 32 1 1.9389 1.9030 0.9230 33 1 1.1202 1.7379 -1.7988 34 1 2.5888 5.9120 -2.0003 35 1 2.3508 8.1023 -2.9839 36 1 1.3808 9.4593 -4.8211 37 1 -0.0969 8.3487 -6.4765 38 1 -0.6790 2.7642 -5.2700 39 1 3.1714 -0.8747 1.2688 40 1 1.6112 -1.8584 1.2684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262085380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:19 Heat of formation + Delta-G solvation = -75.546982 kcal Electronic energy + Delta-G solvation = -29161.690308 eV Core-core repulsion = 24614.583949 eV Total energy + Delta-G solvation = -4547.106359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.91907 -47.59021 -40.29153 -38.85490 -37.92730 -37.16493 -34.69765 -33.85677 -33.01527 -30.39174 -29.27791 -29.05009 -27.52526 -25.70782 -24.00736 -22.97677 -21.69209 -21.06713 -20.35401 -19.55288 -18.43124 -17.93411 -17.30162 -16.74862 -16.52176 -16.23527 -15.89241 -15.45585 -15.01954 -14.71473 -14.49357 -14.26621 -14.11353 -14.07324 -13.79212 -13.71087 -13.62088 -13.34060 -13.31284 -12.88223 -12.84752 -12.64028 -12.03542 -12.01422 -11.83722 -11.20699 -11.18992 -11.01148 -10.97985 -10.69814 -10.52772 -10.11891 -9.98709 -9.81003 -9.24935 -9.10411 -9.03848 -8.04340 -7.34611 -7.07208 -6.22803 -4.45940 1.87040 2.43892 2.67328 2.81069 2.85002 3.07598 3.13817 3.16068 3.23329 3.73340 3.80869 3.93580 4.01440 4.10796 4.27660 4.31039 4.85858 4.90846 4.98506 5.00604 5.22308 5.34315 5.34993 5.40673 5.47325 5.79422 5.96081 6.05675 6.19489 6.42307 6.56347 6.74097 6.78903 7.14203 7.20335 7.46669 7.51641 7.75481 7.85694 8.01264 8.13905 8.35671 8.61405 8.91902 9.00424 10.13535 10.40607 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.003506 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.073528 B = 7984.731202 C = 9902.703364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 C 0.154 3.846 4 N -0.704 5.704 5 C 0.511 3.489 6 O -0.532 6.532 7 C 0.467 3.533 8 O -0.386 6.386 9 N -0.638 5.638 10 C 0.368 3.632 11 C -0.349 4.349 12 C -0.036 4.036 13 C -0.300 4.300 14 C 0.271 3.729 15 C -0.424 4.424 16 H 0.084 0.916 17 C 0.060 3.940 18 N -0.663 5.663 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.475 5.475 24 C -0.158 4.158 25 C 0.201 3.799 26 F -0.157 7.157 27 F -0.155 7.155 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.415 0.585 34 H 0.411 0.589 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.272 0.728 39 H 0.126 0.874 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -10.538 12.754 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.030 3.970 4 N -0.358 5.358 5 C 0.293 3.707 6 O -0.409 6.409 7 C 0.243 3.757 8 O -0.248 6.248 9 N -0.287 5.287 10 C 0.130 3.870 11 C -0.374 4.374 12 C -0.060 4.060 13 C -0.324 4.324 14 C 0.146 3.854 15 C -0.454 4.454 16 H 0.102 0.898 17 C -0.169 4.169 18 N -0.282 5.282 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.194 5.194 24 C -0.196 4.196 25 C 0.164 3.836 26 F -0.137 7.137 27 F -0.136 7.136 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.247 0.753 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.976 -11.769 12.852 17.678 hybrid contribution -0.021 0.361 -0.710 0.797 sum 2.955 -11.407 12.141 16.920 Atomic orbital electron populations 1.21389 0.89108 1.03426 1.04030 1.23160 0.97970 0.91821 1.01227 1.20843 0.98461 0.87307 0.90359 1.45625 1.51425 1.11332 1.27466 1.20833 0.80671 0.82399 0.86784 1.90702 1.35912 1.70112 1.44168 1.20056 0.84948 0.83793 0.86876 1.91217 1.28493 1.66997 1.38104 1.42978 1.44409 1.10422 1.30849 1.18536 0.93061 0.86835 0.88560 1.20508 1.16491 0.93451 1.06990 1.20586 0.94818 0.97181 0.93435 1.21652 1.09757 0.96922 1.04031 1.18363 0.89761 0.87819 0.89444 1.19597 1.23343 0.93479 1.08989 0.89834 1.26159 0.96483 0.98198 0.96055 1.70295 1.27986 1.07780 1.22090 0.86488 0.80704 0.79461 0.81144 1.19613 1.20280 1.18717 1.68642 1.12068 1.35019 1.03664 1.24463 1.04242 0.99716 0.91175 1.20130 0.81106 0.93674 0.88706 1.93036 1.72149 1.65000 1.83544 1.93056 1.44501 1.92562 1.83440 0.90565 0.91130 0.90294 0.90285 0.89100 0.74758 0.75299 0.88716 0.88357 0.88371 0.91660 0.85571 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.17 37.16 0.34 -0.61 16 2 C -0.14 -1.17 2.24 -154.51 -0.35 -1.52 16 3 C 0.15 1.58 5.39 -4.05 -0.02 1.56 16 4 N -0.70 -9.51 5.36 -60.76 -0.33 -9.83 16 5 C 0.51 8.57 7.89 -11.62 -0.09 8.47 16 6 O -0.53 -9.37 16.48 5.49 0.09 -9.28 16 7 C 0.47 9.54 7.84 -11.62 -0.09 9.45 16 8 O -0.39 -9.09 12.24 5.49 0.07 -9.03 16 9 N -0.64 -13.17 5.37 -11.83 -0.06 -13.23 16 10 C 0.37 8.96 7.42 -155.09 -1.15 7.81 16 11 C -0.35 -7.82 9.96 -38.88 -0.39 -8.21 16 12 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 13 C -0.30 -7.42 9.83 -38.65 -0.38 -7.80 16 14 C 0.27 7.46 6.55 -85.00 -0.56 6.91 16 15 C -0.42 -11.36 9.14 -37.73 -0.34 -11.71 16 16 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 17 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 18 N -0.66 -17.57 8.99 55.55 0.50 -17.08 16 19 Si 0.90 18.74 29.56 -169.99 -5.02 13.71 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 N -0.47 -13.05 5.74 -10.28 -0.06 -13.11 16 24 C -0.16 -0.96 9.91 -26.70 -0.26 -1.23 16 25 C 0.20 1.98 5.14 -26.69 -0.14 1.84 16 26 F -0.16 -1.76 16.99 2.25 0.04 -1.73 16 27 F -0.16 -1.88 16.80 2.25 0.04 -1.85 16 28 H 0.08 0.69 7.38 -51.93 -0.38 0.31 16 29 H 0.07 0.48 7.88 -51.93 -0.41 0.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.83 7.62 -51.93 -0.40 0.44 16 32 H 0.09 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.42 5.65 7.11 -40.82 -0.29 5.36 16 34 H 0.41 7.25 8.18 -40.82 -0.33 6.91 16 35 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.27 6.68 8.29 -40.82 -0.34 6.34 16 39 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -32.13 356.01 -7.62 -39.75 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -4.32 Total: 11.11 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -3.93 Total: 5.19 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.05 Total: -53.25 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.13 -7.62 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262085380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.793 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds