Wall clock time and date at job start Tue Mar 31 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 115.55229 * 2 1 4 4 N 1.46499 * 109.47206 * 303.91366 * 3 2 1 5 5 C 1.34780 * 120.00077 * 174.89679 * 4 3 2 6 6 O 1.21361 * 119.99711 * 359.97438 * 5 4 3 7 7 C 1.49365 * 119.99997 * 179.97438 * 5 4 3 8 8 O 1.21357 * 120.00279 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99997 * 180.02562 * 7 5 4 10 10 C 1.39110 * 119.99972 * 185.04670 * 9 7 5 11 11 C 1.39702 * 119.57710 * 174.56929 * 10 9 7 12 12 C 1.38653 * 119.49331 * 179.97438 * 11 10 9 13 13 C 1.38345 * 118.67317 * 359.97438 * 12 11 10 14 14 C 1.40596 * 119.13255 * 0.02562 * 13 12 11 15 15 C 1.41339 * 119.78331 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00209 * 359.97438 * 15 14 13 17 17 C 1.40037 * 119.99776 * 179.97438 * 15 14 13 18 18 N 1.30735 * 120.00241 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46852 * 89.99530 * 19 17 15 21 21 H 1.48495 * 109.47350 * 209.99895 * 19 17 15 22 22 H 1.48499 * 109.46997 * 330.00086 * 19 17 15 23 23 N 1.31936 * 119.57742 * 354.28839 * 10 9 7 24 24 C 1.53000 * 117.49835 * 145.67479 * 2 1 3 25 25 C 1.53004 * 117.49579 * 214.32992 * 2 1 3 26 26 F 1.39903 * 117.50103 * 359.97438 * 25 2 1 27 27 F 1.39904 * 117.49320 * 144.97117 * 25 2 1 28 28 H 1.08999 * 109.46833 * 65.28381 * 1 2 3 29 29 H 1.09001 * 109.46964 * 185.28692 * 1 2 3 30 30 H 1.09005 * 109.46732 * 305.28385 * 1 2 3 31 31 H 1.08997 * 109.47432 * 183.90826 * 3 2 1 32 32 H 1.09003 * 109.47055 * 63.91010 * 3 2 1 33 33 H 0.96995 * 120.00236 * 354.89713 * 4 3 2 34 34 H 0.96996 * 119.99572 * 5.04782 * 9 7 5 35 35 H 1.07994 * 120.25645 * 0.02562 * 11 10 9 36 36 H 1.08006 * 120.66467 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.43879 * 180.02562 * 13 12 11 38 38 H 0.96998 * 120.00162 * 180.02562 * 18 17 15 39 39 H 1.08999 * 117.49540 * 214.99964 * 24 2 1 40 40 H 1.08997 * 117.49933 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.7053 2.1533 -1.1462 5 6 2.0725 3.4417 -1.2940 6 8 2.8043 3.9615 -0.4772 7 6 1.5789 4.2296 -2.4629 8 8 0.8476 3.7096 -3.2800 9 7 1.9465 5.5178 -2.6109 10 6 1.4048 6.2819 -3.6395 11 6 1.7033 7.6445 -3.7171 12 6 1.1629 8.4043 -4.7432 13 6 0.3390 7.7841 -5.6655 14 6 0.0766 6.4092 -5.5332 15 6 -0.7627 5.7616 -6.4680 16 1 -1.2005 6.3228 -7.2803 17 6 -1.0267 4.3922 -6.3408 18 7 -0.4964 3.7128 -5.3578 19 14 -2.1366 3.5364 -7.5758 20 1 -1.3182 3.0210 -8.7027 21 1 -2.8349 2.4056 -6.9134 22 1 -3.1388 4.5023 -8.0932 23 7 0.6202 5.7094 -4.5324 24 6 2.2365 -1.1208 0.7653 25 6 2.2364 -1.1208 -0.7654 26 9 1.4339 -2.0675 -1.4112 27 9 3.4361 -0.8047 -1.4122 28 1 -0.3633 0.4297 -0.9335 29 1 -0.3633 -1.0233 0.0947 30 1 -0.3633 0.5936 0.8389 31 1 3.2716 1.2659 -0.0700 32 1 1.9389 1.9030 0.9230 33 1 1.1202 1.7379 -1.7988 34 1 2.5888 5.9120 -2.0003 35 1 2.3508 8.1023 -2.9839 36 1 1.3808 9.4593 -4.8211 37 1 -0.0969 8.3487 -6.4765 38 1 -0.6790 2.7642 -5.2700 39 1 3.1714 -0.8747 1.2688 40 1 1.6112 -1.8584 1.2684 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262085380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:18 Heat of formation + Delta-G solvation = -96.153045 kcal Electronic energy + Delta-G solvation = -29162.583854 eV Core-core repulsion = 24614.583949 eV Total energy + Delta-G solvation = -4547.999905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.70606 -48.40183 -41.75063 -40.37925 -39.12106 -38.57955 -36.26358 -35.30565 -34.71496 -32.27247 -31.09567 -29.76552 -28.54602 -27.54787 -25.50384 -23.64285 -23.45916 -22.75761 -21.31260 -20.88276 -19.96584 -19.03640 -18.64180 -18.20179 -17.55957 -17.40564 -17.07612 -16.76730 -16.45971 -16.28957 -16.23129 -15.59318 -15.36167 -15.12448 -15.05924 -14.72158 -14.63447 -14.60651 -14.44661 -14.07920 -13.92775 -13.77016 -13.65291 -13.19824 -12.89859 -12.74639 -12.62330 -12.57327 -12.53058 -12.31726 -11.77990 -11.73338 -11.60655 -10.92444 -10.81832 -10.63776 -10.35454 -9.93970 -9.20589 -8.92538 -8.09445 -6.43140 0.35401 1.02123 1.26286 1.30484 1.41835 1.52590 1.55537 1.95793 2.06475 2.26689 2.36217 2.63742 2.97639 3.11806 3.19824 3.48338 3.57226 3.63566 4.01347 4.22285 4.32786 4.46673 4.58536 4.62249 4.67078 4.73461 4.79545 4.81837 4.84700 4.94256 4.98741 5.06043 5.18804 5.25540 5.62871 5.70665 5.88871 5.94586 6.12706 6.28182 6.51963 6.68665 6.81449 7.03460 7.28388 8.24915 8.54428 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.003506 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.073528 B = 7984.731202 C = 9902.703364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 C 0.151 3.849 4 N -0.691 5.691 5 C 0.522 3.478 6 O -0.540 6.540 7 C 0.459 3.541 8 O -0.421 6.421 9 N -0.632 5.632 10 C 0.347 3.653 11 C -0.341 4.341 12 C -0.033 4.033 13 C -0.322 4.322 14 C 0.237 3.763 15 C -0.462 4.462 16 H 0.087 0.913 17 C 0.015 3.985 18 N -0.694 5.694 19 Si 0.974 3.026 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.257 1.257 23 N -0.506 5.506 24 C -0.116 4.116 25 C 0.163 3.837 26 F -0.170 7.170 27 F -0.175 7.175 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.415 0.585 34 H 0.425 0.575 35 H 0.130 0.870 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.273 0.727 39 H 0.147 0.853 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -10.902 14.517 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.028 3.972 4 N -0.344 5.344 5 C 0.303 3.697 6 O -0.418 6.418 7 C 0.237 3.763 8 O -0.286 6.286 9 N -0.282 5.282 10 C 0.109 3.891 11 C -0.367 4.367 12 C -0.057 4.057 13 C -0.345 4.345 14 C 0.112 3.888 15 C -0.492 4.492 16 H 0.105 0.895 17 C -0.210 4.210 18 N -0.314 5.314 19 Si 0.796 3.204 20 H -0.193 1.193 21 H -0.196 1.196 22 H -0.180 1.180 23 N -0.226 5.226 24 C -0.153 4.153 25 C 0.127 3.873 26 F -0.151 7.151 27 F -0.156 7.156 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.251 0.749 34 H 0.263 0.737 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.165 0.835 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.282 -12.134 14.660 19.311 hybrid contribution -0.015 0.549 -1.164 1.288 sum 3.267 -11.585 13.495 18.083 Atomic orbital electron populations 1.21410 0.88707 1.04308 1.03509 1.23132 0.98195 0.90887 1.01976 1.21099 0.98661 0.88075 0.89329 1.45668 1.50289 1.10271 1.28153 1.20028 0.80962 0.83173 0.85552 1.90699 1.36545 1.70503 1.44059 1.20750 0.84205 0.83799 0.87552 1.91215 1.29966 1.67686 1.39689 1.42971 1.44403 1.10590 1.30233 1.19001 0.92978 0.88244 0.88909 1.20964 1.15717 0.92740 1.07254 1.21051 0.93277 0.99149 0.92251 1.21852 1.10966 0.96287 1.05375 1.18853 0.90543 0.89353 0.90082 1.19920 1.24777 0.94713 1.09814 0.89451 1.26974 0.97743 0.98399 0.97911 1.70452 1.29270 1.07912 1.23738 0.85329 0.78581 0.78183 0.78354 1.19298 1.19610 1.18038 1.68599 1.13258 1.36247 1.04525 1.24661 1.04829 0.97762 0.88085 1.20720 0.80906 0.94883 0.90827 1.92998 1.72504 1.65474 1.84125 1.93006 1.45617 1.92815 1.84139 0.92582 0.89918 0.88995 0.90166 0.87588 0.74871 0.73687 0.85174 0.84257 0.87362 0.91634 0.83477 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.17 71.98 0.66 -1.05 16 2 C -0.14 -2.08 2.24 -52.18 -0.12 -2.20 16 3 C 0.15 2.84 5.39 86.38 0.47 3.31 16 4 N -0.69 -18.45 5.36 -464.50 -2.49 -20.94 16 5 C 0.52 17.37 7.89 87.24 0.69 18.06 16 6 O -0.54 -18.40 16.48 -3.28 -0.05 -18.46 16 7 C 0.46 19.12 7.84 87.24 0.68 19.81 16 8 O -0.42 -20.66 12.24 -3.27 -0.04 -20.70 16 9 N -0.63 -26.16 5.37 -309.71 -1.66 -27.82 16 10 C 0.35 16.98 7.42 133.30 0.99 17.97 16 11 C -0.34 -14.78 9.96 22.72 0.23 -14.55 16 12 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 13 C -0.32 -15.99 9.83 22.87 0.22 -15.77 16 14 C 0.24 13.45 6.55 40.20 0.26 13.72 16 15 C -0.46 -25.65 9.14 23.47 0.21 -25.43 16 16 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 17 C 0.02 0.80 5.50 85.29 0.47 1.27 16 18 N -0.69 -38.30 8.99 21.84 0.20 -38.11 16 19 Si 0.97 39.49 29.56 68.60 2.03 41.52 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 N -0.51 -28.68 5.74 -186.43 -1.07 -29.75 16 24 C -0.12 -1.03 9.91 30.62 0.30 -0.73 16 25 C 0.16 3.04 5.14 30.62 0.16 3.19 16 26 F -0.17 -3.76 16.99 44.97 0.76 -3.00 16 27 F -0.18 -4.22 16.80 44.97 0.76 -3.46 16 28 H 0.06 1.01 7.38 -2.39 -0.02 0.99 16 29 H 0.08 0.96 7.88 -2.39 -0.02 0.94 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.08 1.55 7.62 -2.39 -0.02 1.54 16 32 H 0.11 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.41 11.54 7.11 -92.71 -0.66 10.88 16 34 H 0.42 14.63 8.18 -92.71 -0.76 13.88 16 35 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 36 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.27 13.98 8.29 -92.71 -0.77 13.21 16 39 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.15 0.61 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -72.64 356.01 3.59 -69.05 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.29 Total: 35.29 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.46 Total: 16.38 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -5.03 Total: -116.62 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.09 Total: -39.16 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.52 Total: -6.46 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -72.64 3.59 -69.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262085380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.107 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds