Wall clock time and date at job start Tue Mar 31 2020 22:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47243 * 269.99367 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99951 * 3 2 1 6 6 H 1.48503 * 109.47416 * 149.99734 * 3 2 1 7 7 C 1.38954 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00075 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99841 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00151 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.46991 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99807 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.90971 * 23.75051 * 14 13 12 16 16 C 1.53784 * 113.61534 * 155.00078 * 14 13 12 17 17 C 1.53787 * 87.07923 * 89.11397 * 16 14 13 18 18 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 19 19 C 1.53005 * 113.61178 * 140.06478 * 17 16 14 20 20 N 1.46499 * 109.46872 * 174.99760 * 19 17 16 21 21 C 1.34777 * 119.99733 * 179.97438 * 20 19 17 22 22 O 1.21626 * 119.99829 * 0.02562 * 21 20 19 23 23 C 1.47173 * 119.99896 * 180.02562 * 21 20 19 24 24 C 1.38250 * 128.47159 * 180.02562 * 23 21 20 25 25 N 1.31239 * 111.88128 * 180.02562 * 24 23 21 26 26 N 1.27335 * 120.04348 * 359.97438 * 25 24 23 27 27 S 1.56634 * 109.73732 * 359.69500 * 26 25 24 28 28 C 1.53779 * 113.61337 * 252.49719 * 14 13 12 29 29 H 0.97004 * 119.99777 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00274 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46797 * 60.00274 * 12 10 9 32 32 H 1.09003 * 109.47153 * 300.00514 * 12 10 9 33 33 H 1.00898 * 111.00174 * 56.05011 * 13 12 10 34 34 H 1.09004 * 113.61451 * 334.56882 * 16 14 13 35 35 H 1.08994 * 113.61477 * 203.66184 * 16 14 13 36 36 H 1.08995 * 109.46809 * 295.00307 * 19 17 16 37 37 H 1.09006 * 109.46737 * 54.99803 * 19 17 16 38 38 H 0.96993 * 120.00253 * 0.02562 * 20 19 17 39 39 H 1.07993 * 124.05814 * 359.97438 * 24 23 21 40 40 H 1.09006 * 113.61307 * 156.33742 * 28 14 13 41 41 H 1.08999 * 113.69146 * 25.44227 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0016 14 6 1.4978 -7.2709 0.0016 15 1 0.4878 -7.2058 -0.4032 16 6 2.3269 -8.4213 -0.5934 17 6 2.8726 -8.6569 0.8249 18 1 3.7681 -8.0776 1.0500 19 6 3.0148 -10.1361 1.1891 20 7 3.6495 -10.2565 2.5039 21 6 3.8772 -11.4749 3.0332 22 8 3.5561 -12.4744 2.4190 23 6 4.5144 -11.5959 4.3543 24 6 4.8278 -12.7451 5.0561 25 7 5.3923 -12.4751 6.2097 26 7 5.5881 -11.2655 6.5560 27 16 5.0750 -10.3035 5.4314 28 6 1.5762 -8.0141 1.3455 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9209 -0.8887 32 1 0.6172 -4.9205 0.8913 33 1 2.8330 -5.9122 0.7830 34 1 3.0851 -8.0913 -1.3037 35 1 1.7220 -9.2456 -0.9710 36 1 2.0286 -10.5995 1.2178 37 1 3.6299 -10.6369 0.4413 38 1 3.9053 -9.4594 2.9938 39 1 4.6310 -13.7448 4.6983 40 1 0.7660 -8.7273 1.4980 41 1 1.7281 -7.3566 2.2015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264416237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:51 Heat of formation + Delta-G solvation = 25.336924 kcal Electronic energy + Delta-G solvation = -25192.699710 eV Core-core repulsion = 21236.101143 eV Total energy + Delta-G solvation = -3956.598567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34760 -40.30131 -39.38610 -38.08222 -35.34667 -34.09917 -33.22961 -32.58190 -31.24476 -29.14501 -27.56677 -26.21716 -25.83906 -24.10991 -23.45176 -22.30079 -21.18288 -19.85589 -19.36070 -19.09231 -18.05537 -17.88222 -16.64691 -16.47430 -16.12141 -15.89639 -15.56787 -15.32432 -15.04184 -14.68741 -14.46665 -14.45115 -13.92286 -13.76518 -13.22387 -13.17276 -12.81738 -12.71032 -12.50091 -12.39651 -11.99226 -11.61681 -11.56965 -11.10482 -11.04147 -10.92236 -10.75054 -10.63003 -10.53424 -10.42774 -10.39020 -10.32367 -10.25052 -9.61146 -9.55157 -8.51447 -8.12266 -8.00391 -6.45810 -3.86742 -0.80699 0.26660 0.94701 1.44970 2.43887 2.45085 3.14907 3.23927 3.29324 3.49133 3.85707 3.97822 4.10194 4.16512 4.21796 4.32004 4.43379 4.51957 4.80046 4.95983 5.04496 5.11924 5.21516 5.29087 5.33491 5.51283 5.54495 5.64342 5.71926 5.75222 5.89602 6.00378 6.02659 6.11705 6.25152 6.78627 7.10875 7.18345 7.48818 7.51278 7.58325 8.01861 8.56557 9.13597 9.49713 10.00770 10.71793 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.001797 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.238489 B =15574.110816 C =16905.797035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.649 5.649 14 C 0.068 3.932 15 H 0.085 0.915 16 C -0.120 4.120 17 C -0.126 4.126 18 H 0.101 0.899 19 C 0.130 3.870 20 N -0.716 5.716 21 C 0.601 3.399 22 O -0.517 6.517 23 C -0.291 4.291 24 C 0.075 3.925 25 N -0.252 5.252 26 N -0.254 5.254 27 S 0.430 5.570 28 C -0.167 4.167 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.350 0.650 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.402 0.598 39 H 0.216 0.784 40 H 0.086 0.914 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -22.350 7.054 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.081 4.081 13 N -0.280 5.280 14 C -0.044 4.044 15 H 0.103 0.897 16 C -0.159 4.159 17 C -0.145 4.145 18 H 0.119 0.881 19 C 0.008 3.992 20 N -0.368 5.368 21 C 0.384 3.616 22 O -0.393 6.393 23 C -0.432 4.432 24 C -0.092 4.092 25 N -0.116 5.116 26 N -0.235 5.235 27 S 0.564 5.436 28 C -0.207 4.207 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.104 0.896 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.298 -21.807 7.401 23.427 hybrid contribution -0.957 0.167 0.248 1.003 sum 3.341 -21.640 7.649 23.194 Atomic orbital electron populations 1.69610 1.05944 1.28204 1.50469 1.25271 0.95647 0.99763 0.97271 0.85851 0.79207 0.80757 0.78435 1.20366 1.20933 1.19421 1.19700 0.93373 0.82218 1.47674 0.87906 1.41867 1.09218 1.04619 1.64215 1.19811 0.88386 0.84734 0.84603 1.90520 1.13759 1.87077 1.55543 1.21717 0.94347 0.90804 1.01273 1.59915 1.18126 0.99132 1.50834 1.22579 0.97393 0.89329 0.95061 0.89704 1.23032 1.00030 0.97629 0.95210 1.22853 0.98921 0.93872 0.98817 0.88117 1.21573 0.98217 0.96881 0.82553 1.45931 1.62191 1.07169 1.21505 1.16471 0.78484 0.84157 0.82513 1.90870 1.51338 1.36444 1.60679 1.28096 1.13175 0.98093 1.03833 1.24503 0.94880 1.01506 0.88278 1.70721 1.15279 1.09500 1.16095 1.78910 1.20488 1.00938 1.23162 1.82739 1.38884 1.17879 1.04058 1.23819 0.97511 1.00575 0.98767 0.91841 0.77445 0.89483 0.93763 0.82928 0.89878 0.89641 0.90682 0.90630 0.76376 0.76718 0.89585 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.89 16 10 C 0.44 9.94 7.82 -10.98 -0.09 9.85 16 11 O -0.58 -15.30 15.78 5.55 0.09 -15.21 16 12 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 13 N -0.65 -9.31 6.19 -107.13 -0.66 -9.98 16 14 C 0.07 0.69 4.28 -66.90 -0.29 0.41 16 15 H 0.08 0.84 7.87 -51.93 -0.41 0.44 16 16 C -0.12 -1.03 7.44 -25.91 -0.19 -1.22 16 17 C -0.13 -0.93 3.51 -89.80 -0.32 -1.24 16 18 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 19 C 0.13 0.92 5.51 -4.04 -0.02 0.90 16 20 N -0.72 -4.80 5.55 -61.46 -0.34 -5.14 16 21 C 0.60 5.12 7.80 -12.63 -0.10 5.02 16 22 O -0.52 -6.06 16.98 5.25 0.09 -5.97 16 23 C -0.29 -2.11 6.81 -35.95 -0.24 -2.36 16 24 C 0.08 0.56 11.55 -17.80 -0.21 0.36 16 25 N -0.25 -2.35 11.54 30.36 0.35 -2.00 16 26 N -0.25 -2.31 12.51 60.35 0.75 -1.56 16 27 S 0.43 2.61 23.05 -107.50 -2.48 0.13 16 28 C -0.17 -1.33 7.16 -25.92 -0.19 -1.51 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 31 H 0.09 1.33 8.13 -51.93 -0.42 0.90 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.35 5.13 7.82 -39.29 -0.31 4.82 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 1.94 7.90 -40.82 -0.32 1.62 16 39 H 0.22 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.09 0.60 7.90 -51.93 -0.41 0.19 16 41 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -33.36 371.45 -7.93 -41.29 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.06 Total: 11.25 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.91 Total: 3.17 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.77 Total: -55.88 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.18 Total: -21.18 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.48 Total: 0.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.36 -7.93 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264416237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.628 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds