Wall clock time and date at job start Tue Mar 31 2020 22:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47243 * 269.99367 * 3 2 1 5 5 H 1.48495 * 109.47331 * 29.99951 * 3 2 1 6 6 H 1.48503 * 109.47416 * 149.99734 * 3 2 1 7 7 C 1.38954 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00075 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99841 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00151 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.46991 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99807 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.90971 * 23.75051 * 14 13 12 16 16 C 1.53784 * 113.61534 * 155.00078 * 14 13 12 17 17 C 1.53787 * 87.07923 * 89.11397 * 16 14 13 18 18 H 1.09000 * 113.61529 * 270.88430 * 17 16 14 19 19 C 1.53005 * 113.61178 * 140.06478 * 17 16 14 20 20 N 1.46499 * 109.46872 * 174.99760 * 19 17 16 21 21 C 1.34777 * 119.99733 * 179.97438 * 20 19 17 22 22 O 1.21626 * 119.99829 * 0.02562 * 21 20 19 23 23 C 1.47173 * 119.99896 * 180.02562 * 21 20 19 24 24 C 1.38250 * 128.47159 * 180.02562 * 23 21 20 25 25 N 1.31239 * 111.88128 * 180.02562 * 24 23 21 26 26 N 1.27335 * 120.04348 * 359.97438 * 25 24 23 27 27 S 1.56634 * 109.73732 * 359.69500 * 26 25 24 28 28 C 1.53779 * 113.61337 * 252.49719 * 14 13 12 29 29 H 0.97004 * 119.99777 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00274 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46797 * 60.00274 * 12 10 9 32 32 H 1.09003 * 109.47153 * 300.00514 * 12 10 9 33 33 H 1.00898 * 111.00174 * 56.05011 * 13 12 10 34 34 H 1.09004 * 113.61451 * 334.56882 * 16 14 13 35 35 H 1.08994 * 113.61477 * 203.66184 * 16 14 13 36 36 H 1.08995 * 109.46809 * 295.00307 * 19 17 16 37 37 H 1.09006 * 109.46737 * 54.99803 * 19 17 16 38 38 H 0.96993 * 120.00253 * 0.02562 * 20 19 17 39 39 H 1.07993 * 124.05814 * 359.97438 * 24 23 21 40 40 H 1.09006 * 113.61307 * 156.33742 * 28 14 13 41 41 H 1.08999 * 113.69146 * 25.44227 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0016 14 6 1.4978 -7.2709 0.0016 15 1 0.4878 -7.2058 -0.4032 16 6 2.3269 -8.4213 -0.5934 17 6 2.8726 -8.6569 0.8249 18 1 3.7681 -8.0776 1.0500 19 6 3.0148 -10.1361 1.1891 20 7 3.6495 -10.2565 2.5039 21 6 3.8772 -11.4749 3.0332 22 8 3.5561 -12.4744 2.4190 23 6 4.5144 -11.5959 4.3543 24 6 4.8278 -12.7451 5.0561 25 7 5.3923 -12.4751 6.2097 26 7 5.5881 -11.2655 6.5560 27 16 5.0750 -10.3035 5.4314 28 6 1.5762 -8.0141 1.3455 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9209 -0.8887 32 1 0.6172 -4.9205 0.8913 33 1 2.8330 -5.9122 0.7830 34 1 3.0851 -8.0913 -1.3037 35 1 1.7220 -9.2456 -0.9710 36 1 2.0286 -10.5995 1.2178 37 1 3.6299 -10.6369 0.4413 38 1 3.9053 -9.4594 2.9938 39 1 4.6310 -13.7448 4.6983 40 1 0.7660 -8.7273 1.4980 41 1 1.7281 -7.3566 2.2015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264416237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:51 Heat of formation + Delta-G solvation = -1.513037 kcal Electronic energy + Delta-G solvation = -25193.864012 eV Core-core repulsion = 21236.101143 eV Total energy + Delta-G solvation = -3957.762868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95055 -41.01289 -40.32758 -39.67860 -36.24241 -35.85401 -34.36190 -33.26702 -33.16146 -29.89260 -28.47143 -27.53498 -26.50064 -25.68214 -24.19745 -22.97455 -21.81425 -21.09393 -20.43790 -19.91164 -19.84131 -18.61891 -17.68136 -17.30067 -17.09268 -16.89812 -16.50754 -16.28688 -16.20990 -15.85675 -15.68085 -15.51882 -15.10049 -14.90394 -14.37644 -14.11069 -13.84557 -13.60414 -13.46599 -13.21614 -13.18646 -13.03031 -12.91669 -12.62630 -12.40482 -12.11722 -11.76983 -11.62149 -11.49593 -11.35424 -11.23627 -11.22003 -11.03103 -10.96155 -10.30934 -10.22070 -10.00203 -9.23231 -8.45685 -5.94117 -1.39394 -0.27243 0.38375 0.84811 1.38950 1.43080 1.55321 1.81355 1.84211 2.07103 2.29943 2.92475 2.93403 3.22003 3.49445 3.55741 3.61397 3.66082 3.78117 3.86691 4.09376 4.32099 4.38287 4.50482 4.55159 4.57526 4.69878 4.73554 4.88132 4.92091 4.98430 5.10459 5.29221 5.32656 5.42157 5.46354 5.95737 6.19845 6.21716 6.49487 6.53319 6.61530 6.88296 7.13997 7.58156 8.13179 8.71558 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.001797 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.238489 B =15574.110816 C =16905.797035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.067 3.933 13 N -0.664 5.664 14 C 0.057 3.943 15 H 0.092 0.908 16 C -0.116 4.116 17 C -0.114 4.114 18 H 0.096 0.904 19 C 0.135 3.865 20 N -0.707 5.707 21 C 0.604 3.396 22 O -0.552 6.552 23 C -0.301 4.301 24 C 0.076 3.924 25 N -0.277 5.277 26 N -0.290 5.290 27 S 0.499 5.501 28 C -0.155 4.155 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.346 0.654 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.412 0.588 39 H 0.231 0.769 40 H 0.102 0.898 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -22.549 7.235 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.066 4.066 13 N -0.296 5.296 14 C -0.054 4.054 15 H 0.110 0.890 16 C -0.155 4.155 17 C -0.133 4.133 18 H 0.115 0.885 19 C 0.012 3.988 20 N -0.358 5.358 21 C 0.388 3.612 22 O -0.431 6.431 23 C -0.443 4.443 24 C -0.092 4.092 25 N -0.140 5.140 26 N -0.271 5.271 27 S 0.634 5.366 28 C -0.194 4.194 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.121 0.879 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.585 -22.005 7.597 23.554 hybrid contribution -0.737 0.239 0.148 0.789 sum 2.848 -21.766 7.745 23.278 Atomic orbital electron populations 1.69668 1.06792 1.29251 1.50377 1.26027 0.96546 1.02397 0.96369 0.84940 0.77927 0.76970 0.78588 1.19791 1.19628 1.19697 1.19657 0.92703 0.84051 1.49829 0.90292 1.41945 1.09351 1.04746 1.65063 1.20939 0.88278 0.86216 0.82102 1.90488 1.15862 1.87994 1.56664 1.21559 0.94037 0.87927 1.03035 1.59911 1.18386 1.00203 1.51080 1.22703 0.97642 0.87832 0.97187 0.88978 1.23035 0.99626 0.97426 0.95396 1.22723 0.98670 0.93947 0.97976 0.88539 1.21513 0.98339 0.96426 0.82492 1.45872 1.61434 1.07123 1.21400 1.16541 0.78037 0.84035 0.82586 1.90854 1.52993 1.37574 1.61697 1.28035 1.13605 0.98937 1.03702 1.24782 0.94224 1.02402 0.87782 1.70765 1.16358 1.09859 1.17023 1.78691 1.21890 1.01556 1.25008 1.82423 1.36503 1.15747 1.01960 1.23743 0.98084 1.00304 0.97289 0.91340 0.76970 0.87957 0.91416 0.83391 0.91578 0.87650 0.90343 0.90987 0.75198 0.75256 0.87936 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 42.09 29.55 68.60 2.03 44.12 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -28.50 5.29 -306.98 -1.62 -30.12 16 10 C 0.44 19.84 7.82 87.66 0.69 20.52 16 11 O -0.62 -33.19 15.78 -3.05 -0.05 -33.24 16 12 C 0.07 2.09 6.01 85.56 0.51 2.60 16 13 N -0.66 -18.20 6.19 -492.85 -3.05 -21.25 16 14 C 0.06 1.03 4.28 45.44 0.19 1.23 16 15 H 0.09 1.57 7.87 -2.39 -0.02 1.55 16 16 C -0.12 -1.75 7.44 31.12 0.23 -1.52 16 17 C -0.11 -1.44 3.51 -10.26 -0.04 -1.47 16 18 H 0.10 1.34 8.08 -2.39 -0.02 1.32 16 19 C 0.13 1.62 5.51 86.38 0.48 2.09 16 20 N -0.71 -8.11 5.55 -466.61 -2.59 -10.70 16 21 C 0.60 9.47 7.80 86.59 0.68 10.15 16 22 O -0.55 -12.44 16.98 -4.11 -0.07 -12.51 16 23 C -0.30 -4.00 6.81 24.62 0.17 -3.83 16 24 C 0.08 1.08 11.55 84.78 0.98 2.06 16 25 N -0.28 -5.04 11.54 -57.87 -0.67 -5.71 16 26 N -0.29 -5.07 12.51 37.02 0.46 -4.61 16 27 S 0.50 5.28 23.05 -56.49 -1.30 3.98 16 28 C -0.16 -2.03 7.16 31.12 0.22 -1.81 16 29 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 31 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.35 9.83 7.82 -89.70 -0.70 9.12 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.08 0.95 7.85 -2.39 -0.02 0.93 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.41 3.04 7.90 -92.71 -0.73 2.31 16 39 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.10 1.07 7.90 -2.38 -0.02 1.05 16 41 H 0.07 0.95 8.07 -2.39 -0.02 0.93 16 Total: -1.00 -72.67 371.45 -2.24 -74.91 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -1.05 Total: 31.43 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.39 Total: 12.10 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -7.19 Total: -120.78 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.12 Total: -45.75 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.30 Total: 3.98 kcal Total: -72.67 -2.24 -74.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264416237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.396 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds