Wall clock time and date at job start Tue Mar 31 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47082 * 269.99787 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99863 * 3 2 1 6 6 H 1.48503 * 109.46892 * 149.99696 * 3 2 1 7 7 C 1.38793 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00353 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99856 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00069 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47523 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99539 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99912 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.90371 * 31.14058 * 14 13 11 16 16 C 1.55422 * 111.10625 * 267.17442 * 14 13 11 17 17 C 1.54321 * 103.04810 * 206.29847 * 16 14 13 18 18 N 1.47448 * 107.23159 * 22.28093 * 17 16 14 19 19 C 1.46900 * 111.00041 * 123.26094 * 18 17 16 20 20 C 1.50699 * 109.47353 * 69.15552 * 19 18 17 21 21 C 1.38230 * 119.58784 * 94.72312 * 20 19 18 22 22 C 1.38594 * 119.18997 * 179.77461 * 21 20 19 23 23 C 1.38876 * 118.39735 * 0.49736 * 22 21 20 24 24 F 1.35096 * 120.44325 * 179.73241 * 23 22 21 25 25 C 1.38427 * 119.11239 * 359.74881 * 23 22 21 26 26 N 1.31844 * 119.59030 * 275.00617 * 20 19 18 27 27 C 1.47846 * 108.56553 * 0.99350 * 18 17 16 28 28 H 0.96996 * 119.99567 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47135 * 59.99854 * 10 9 7 30 30 H 1.09008 * 109.47140 * 300.00422 * 10 9 7 31 31 H 0.96994 * 119.99874 * 359.97438 * 13 11 10 32 32 H 1.09004 * 110.69757 * 87.90721 * 16 14 13 33 33 H 1.09004 * 110.69257 * 324.68764 * 16 14 13 34 34 H 1.08999 * 109.88748 * 262.87827 * 17 16 14 35 35 H 1.08997 * 110.02694 * 141.76299 * 17 16 14 36 36 H 1.09001 * 109.47310 * 189.16067 * 19 18 17 37 37 H 1.09001 * 109.46761 * 309.15792 * 19 18 17 38 38 H 1.08005 * 120.40704 * 0.02562 * 21 20 19 39 39 H 1.08000 * 120.79801 * 180.26440 * 22 21 20 40 40 H 1.08002 * 119.63284 * 180.02562 * 25 23 22 41 41 H 1.09002 * 110.37464 * 94.73346 * 27 18 17 42 42 H 1.08999 * 110.37318 * 216.96123 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2964 -0.0003 13 7 6.0457 -4.4948 0.0010 14 6 7.4907 -4.7359 0.0005 15 1 8.0179 -3.9399 0.5263 16 6 8.0303 -4.8996 -1.4478 17 6 9.2862 -5.7753 -1.2547 18 7 9.1259 -6.4932 0.0232 19 6 9.2175 -7.9460 -0.1740 20 6 10.6318 -8.3151 -0.5408 21 6 11.5102 -8.7183 0.4475 22 6 12.8076 -9.0603 0.1004 23 6 13.1787 -8.9735 -1.2351 24 9 14.4343 -9.2916 -1.6187 25 6 12.2448 -8.5562 -2.1678 26 7 11.0177 -8.2440 -1.7995 27 6 7.8225 -6.1196 0.6126 28 1 -0.4849 0.8400 -0.0004 29 1 3.6433 -3.4318 -0.8895 30 1 3.6439 -3.4314 0.8904 31 1 5.4291 -5.2435 0.0018 32 1 8.2972 -3.9312 -1.8712 33 1 7.2989 -5.4078 -2.0762 34 1 10.1752 -5.1457 -1.2174 35 1 9.3723 -6.4900 -2.0732 36 1 8.9361 -8.4562 0.7472 37 1 8.5438 -8.2469 -0.9764 38 1 11.1881 -8.7701 1.4772 39 1 13.5141 -9.3829 0.8509 40 1 12.5242 -8.4861 -3.2087 41 1 7.0595 -6.8484 0.3392 42 1 7.9039 -6.0453 1.6971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266303066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:15 Heat of formation + Delta-G solvation = -36.062595 kcal Electronic energy + Delta-G solvation = -25316.476980 eV Core-core repulsion = 21337.295969 eV Total energy + Delta-G solvation = -3979.181011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.46885 -40.84419 -39.81882 -38.40561 -34.69114 -33.03435 -32.68070 -32.44524 -30.47851 -29.63930 -28.05087 -26.07045 -25.59783 -24.40471 -22.80571 -21.53429 -21.19988 -20.34030 -18.16437 -17.93230 -17.79927 -16.96747 -16.70035 -16.50644 -16.20920 -15.83301 -15.17700 -15.01503 -14.90031 -14.64373 -14.46379 -13.93615 -13.86379 -13.76159 -13.61946 -13.33063 -13.19232 -13.03573 -12.80296 -12.44677 -12.26449 -11.84195 -11.65583 -11.60524 -11.27251 -11.01577 -10.92472 -10.61367 -10.46028 -10.10730 -9.86913 -9.58035 -9.40969 -9.05088 -8.99514 -8.74189 -8.51406 -6.93026 -6.29885 -4.01799 0.34801 0.56247 2.69599 2.91949 2.96359 3.25608 3.32920 3.45721 3.50014 3.57653 3.72891 3.90601 4.03249 4.21475 4.30268 4.31543 4.32686 4.55039 4.72225 4.77907 4.84511 4.95802 5.00996 5.07563 5.09268 5.14562 5.22188 5.25328 5.32682 5.41774 5.44524 5.63254 5.73774 5.74718 5.88902 5.98489 6.02270 6.06267 6.41328 6.55909 6.60301 7.30602 7.55992 7.93141 8.40411 8.45420 9.16323 10.79304 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.042744 B = 0.001654 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.901276 B =16925.987230 C =17153.345231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.729 5.729 14 C 0.140 3.860 15 H 0.106 0.894 16 C -0.154 4.154 17 C 0.041 3.959 18 N -0.521 5.521 19 C 0.099 3.901 20 C 0.128 3.872 21 C -0.121 4.121 22 C -0.109 4.109 23 C 0.044 3.956 24 F -0.131 7.131 25 C 0.078 3.922 26 N -0.451 5.451 27 C 0.038 3.962 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.055 0.945 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.177 -23.003 -0.149 33.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.382 5.382 14 C 0.033 3.967 15 H 0.124 0.876 16 C -0.194 4.194 17 C -0.087 4.087 18 N -0.246 5.246 19 C -0.029 4.029 20 C -0.010 4.010 21 C -0.142 4.142 22 C -0.136 4.136 23 C 0.023 3.977 24 F -0.110 7.110 25 C -0.081 4.081 26 N -0.160 5.160 27 C -0.090 4.090 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.073 0.927 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 25.122 -20.928 -0.444 32.700 hybrid contribution -0.792 -1.318 -0.066 1.539 sum 24.330 -22.246 -0.510 32.971 Atomic orbital electron populations 1.69941 1.05911 1.27770 1.48041 1.24713 0.94453 0.98967 0.93159 0.86735 0.81900 0.83274 0.79945 1.19208 1.19927 1.15912 1.22317 0.88275 0.97540 1.58831 0.89390 1.84804 1.09277 0.99975 1.97427 1.23282 0.93913 1.04468 1.05829 1.20299 0.90592 0.82254 0.74938 1.90706 1.58738 1.42138 1.47471 1.45860 1.06669 1.08175 1.77537 1.22016 0.81687 0.97273 0.95706 0.87562 1.23253 0.97394 1.01218 0.97547 1.22888 0.98108 0.97096 0.90621 1.63599 1.31411 1.04792 1.24761 1.21141 0.90628 0.89630 1.01547 1.21144 0.96672 0.94892 0.88338 1.21898 0.92533 0.98323 1.01411 1.21699 0.97695 0.99273 0.94903 1.18844 0.81304 1.03114 0.94473 1.91533 1.37388 1.90382 1.91671 1.22888 0.88241 0.96748 1.00232 1.67530 1.16321 1.12898 1.19232 1.23242 0.89658 0.95560 1.00563 0.91939 0.88499 0.88406 0.76655 0.90004 0.91028 0.90588 0.90637 0.88755 0.92189 0.83507 0.83431 0.81552 0.92688 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 11 C 0.53 9.13 7.85 -10.99 -0.09 9.04 16 12 O -0.52 -10.90 15.50 5.55 0.09 -10.81 16 13 N -0.73 -8.69 5.20 -51.59 -0.27 -8.96 16 14 C 0.14 1.51 3.43 -65.64 -0.23 1.29 16 15 H 0.11 1.41 7.54 -51.93 -0.39 1.02 16 16 C -0.15 -1.60 6.65 -24.75 -0.16 -1.77 16 17 C 0.04 0.37 6.30 -2.83 -0.02 0.36 16 18 N -0.52 -4.27 5.15 -232.68 -1.20 -5.47 16 19 C 0.10 0.65 4.87 -4.98 -0.02 0.62 16 20 C 0.13 0.93 5.93 -82.59 -0.49 0.45 16 21 C -0.12 -0.70 9.72 -39.45 -0.38 -1.08 16 22 C -0.11 -0.62 10.16 -39.21 -0.40 -1.02 16 23 C 0.04 0.31 7.35 -39.28 -0.29 0.02 16 24 F -0.13 -1.00 17.28 2.25 0.04 -0.96 16 25 C 0.08 0.56 11.17 -17.47 -0.20 0.36 16 26 N -0.45 -3.78 9.01 -9.42 -0.08 -3.86 16 27 C 0.04 0.30 6.33 -2.30 -0.01 0.28 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 31 H 0.40 3.58 8.57 -40.82 -0.35 3.23 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.70 6.40 -51.93 -0.33 0.37 16 36 H 0.09 0.43 7.98 -51.93 -0.41 0.01 16 37 H 0.06 0.41 7.98 -51.93 -0.41 0.00 16 38 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.05 0.35 7.67 -51.93 -0.40 -0.04 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -34.39 370.33 -9.31 -43.71 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.68 Total: 0.47 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.85 Total: -5.50 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.78 Total: -43.95 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.39 -9.31 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266303066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.646 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds