Wall clock time and date at job start Tue Mar 31 2020 22:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.08995 * 110.28644 * 324.32216 * 14 13 11 16 16 C 1.54261 * 110.32743 * 86.44869 * 14 13 11 17 17 C 1.54378 * 105.05925 * 118.89513 * 16 14 13 18 18 N 1.48556 * 104.59476 * 23.85440 * 17 16 14 19 19 C 1.46899 * 110.99975 * 200.95734 * 18 17 16 20 20 C 1.50705 * 109.47204 * 290.12547 * 19 18 17 21 21 C 1.38239 * 119.58632 * 94.72837 * 20 19 18 22 22 C 1.38590 * 119.18498 * 179.77413 * 21 20 19 23 23 C 1.38873 * 118.40163 * 0.49278 * 22 21 20 24 24 F 1.35105 * 120.44508 * 179.72825 * 23 22 21 25 25 C 1.38423 * 119.11127 * 359.74723 * 23 22 21 26 26 N 1.31843 * 119.59112 * 275.00400 * 20 19 18 27 27 C 1.48554 * 104.22374 * 320.51527 * 18 17 16 28 28 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 32 32 H 1.08998 * 110.32750 * 237.79676 * 16 14 13 33 33 H 1.09007 * 110.31954 * 359.89911 * 16 14 13 34 34 H 1.09001 * 110.40999 * 142.63496 * 17 16 14 35 35 H 1.09006 * 110.41329 * 265.07524 * 17 16 14 36 36 H 1.08993 * 109.47077 * 50.12680 * 19 18 17 37 37 H 1.09004 * 109.47262 * 170.12933 * 19 18 17 38 38 H 1.07995 * 120.40239 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.79747 * 180.21837 * 22 21 20 40 40 H 1.08007 * 119.63540 * 180.02562 * 25 23 22 41 41 H 1.09000 * 110.41347 * 280.70067 * 27 18 17 42 42 H 1.09000 * 110.41335 * 158.25697 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 7.4905 -4.7360 0.0064 15 1 8.0008 -3.9791 -0.5891 16 6 8.0320 -4.7358 1.4509 17 6 8.6222 -6.1472 1.6582 18 7 8.9382 -6.6257 0.2878 19 6 9.0359 -8.0910 0.2513 20 6 10.2739 -8.5305 0.9898 21 6 10.1824 -8.8915 2.3211 22 6 11.3253 -9.2988 2.9909 23 6 12.5271 -9.3182 2.2952 24 9 13.6674 -9.7030 2.9092 25 6 12.5411 -8.9377 0.9644 26 7 11.4316 -8.5607 0.3597 27 6 7.7993 -6.1474 -0.5375 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4311 0.8927 30 1 3.6439 -3.4323 -0.8873 31 1 5.4288 -5.2436 0.0045 32 1 8.8091 -3.9800 1.5639 33 1 7.2228 -4.5545 2.1584 34 1 9.5288 -6.0953 2.2612 35 1 7.8882 -6.8009 2.1293 36 1 8.1562 -8.5257 0.7259 37 1 9.0927 -8.4258 -0.7845 38 1 9.2315 -8.8595 2.8320 39 1 11.2831 -9.5899 4.0301 40 1 13.4710 -8.9500 0.4151 41 1 6.9365 -6.8012 -0.4101 42 1 8.0863 -6.0956 -1.5878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266303067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:17 Heat of formation + Delta-G solvation = -34.570987 kcal Electronic energy + Delta-G solvation = -25360.957656 eV Core-core repulsion = 21381.841326 eV Total energy + Delta-G solvation = -3979.116330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.47464 -40.85090 -39.89132 -38.39408 -34.74986 -33.05903 -32.65015 -32.45178 -30.55712 -29.66422 -28.04208 -26.06441 -25.60059 -24.49276 -22.83765 -21.55879 -21.37412 -20.16651 -18.16213 -17.92505 -17.79924 -17.11177 -16.70469 -16.47826 -16.18597 -16.02407 -15.14319 -14.95470 -14.91829 -14.64985 -14.55340 -14.21768 -13.93766 -13.84224 -13.58624 -13.27914 -13.12158 -12.89749 -12.80768 -12.52564 -12.06313 -11.92212 -11.71396 -11.68586 -11.27868 -11.02187 -10.97976 -10.62209 -10.48643 -10.09228 -9.87409 -9.57950 -9.43023 -9.06720 -9.00337 -8.93617 -8.52041 -6.93738 -6.30606 -4.02519 0.32144 0.54999 2.69945 2.92120 2.95720 3.25991 3.32521 3.44290 3.49451 3.56797 3.72261 3.81407 4.05848 4.19529 4.21041 4.28871 4.31812 4.50692 4.71496 4.75985 4.80165 4.86463 4.90776 5.04031 5.08573 5.11627 5.21341 5.26317 5.29465 5.32775 5.37011 5.53806 5.64079 5.72995 5.88329 5.93857 5.98044 6.03949 6.23815 6.46684 6.60251 7.34128 7.55227 7.92370 8.39602 8.45374 9.15616 10.78556 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.001675 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.360324 B =16714.571899 C =16820.023554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.732 5.732 14 C 0.145 3.855 15 H 0.101 0.899 16 C -0.135 4.135 17 C 0.030 3.970 18 N -0.498 5.498 19 C 0.094 3.906 20 C 0.130 3.870 21 C -0.137 4.137 22 C -0.108 4.108 23 C 0.044 3.956 24 F -0.131 7.131 25 C 0.079 3.921 26 N -0.437 5.437 27 C 0.030 3.970 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.398 0.602 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.054 0.946 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.856 -23.342 4.373 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.387 5.387 14 C 0.039 3.961 15 H 0.119 0.881 16 C -0.174 4.174 17 C -0.098 4.098 18 N -0.223 5.223 19 C -0.035 4.035 20 C -0.009 4.009 21 C -0.157 4.157 22 C -0.134 4.134 23 C 0.022 3.978 24 F -0.109 7.109 25 C -0.080 4.080 26 N -0.145 5.145 27 C -0.098 4.098 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.072 0.928 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.549 -21.232 3.308 31.879 hybrid contribution -1.639 -1.437 1.414 2.598 sum 21.910 -22.669 4.721 31.878 Atomic orbital electron populations 1.69943 1.05915 1.27773 1.48028 1.24714 0.94456 0.98976 0.93158 0.86732 0.81884 0.83261 0.79961 1.19187 1.19939 1.15924 1.22315 0.88285 0.97529 1.58845 0.89405 1.84808 1.09261 0.99980 1.97425 1.23286 0.93986 1.04462 1.05780 1.20290 0.90566 0.82301 0.75048 1.90708 1.58720 1.42147 1.47372 1.46103 1.06802 1.08130 1.77666 1.21553 0.81377 0.96716 0.96464 0.88099 1.22767 1.01211 0.96385 0.97056 1.23228 0.99814 0.96049 0.90672 1.65378 1.40057 1.08775 1.08065 1.21107 0.92140 0.88788 1.01452 1.21105 0.93555 0.95028 0.91162 1.21953 0.99393 0.99368 0.94974 1.21662 0.91232 0.99041 1.01476 1.18869 0.83049 1.02603 0.93238 1.91537 1.47911 1.88613 1.82863 1.22968 0.98165 0.96382 0.90492 1.67556 0.97778 1.11098 1.38117 1.23351 0.92416 0.94820 0.99188 0.91937 0.88521 0.88481 0.76778 0.90181 0.90359 0.90170 0.93467 0.92343 0.88308 0.83883 0.83416 0.81449 0.92798 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.09 16 11 C 0.53 8.96 7.84 -10.98 -0.09 8.88 16 12 O -0.52 -10.75 15.56 5.56 0.09 -10.67 16 13 N -0.73 -8.50 5.04 -52.47 -0.26 -8.77 16 14 C 0.14 1.54 3.36 -66.55 -0.22 1.31 16 15 H 0.10 1.31 7.64 -51.93 -0.40 0.91 16 16 C -0.13 -1.36 6.78 -25.35 -0.17 -1.53 16 17 C 0.03 0.24 5.58 -2.19 -0.01 0.22 16 18 N -0.50 -4.06 5.36 -231.41 -1.24 -5.30 16 19 C 0.09 0.62 5.13 -4.97 -0.03 0.59 16 20 C 0.13 0.97 5.92 -82.58 -0.49 0.48 16 21 C -0.14 -0.78 9.14 -39.45 -0.36 -1.14 16 22 C -0.11 -0.62 10.16 -39.22 -0.40 -1.02 16 23 C 0.04 0.31 7.35 -39.28 -0.29 0.02 16 24 F -0.13 -1.00 17.28 2.25 0.04 -0.96 16 25 C 0.08 0.59 11.17 -17.47 -0.20 0.39 16 26 N -0.44 -3.90 10.27 -9.41 -0.10 -3.99 16 27 C 0.03 0.24 6.19 -2.19 -0.01 0.23 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.40 3.44 8.35 -40.82 -0.34 3.10 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.84 7.95 -51.92 -0.41 0.43 16 34 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 35 H 0.05 0.30 7.82 -51.93 -0.41 -0.10 16 36 H 0.06 0.28 7.78 -51.93 -0.40 -0.12 16 37 H 0.10 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.05 0.33 7.59 -51.93 -0.39 -0.06 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -34.61 371.43 -9.37 -43.98 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.73 Total: -0.18 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.83 Total: -5.55 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.83 Total: -43.64 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.61 -9.37 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266303067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.406 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds