Wall clock time and date at job start Tue Mar 31 2020 22:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.08995 * 110.28644 * 324.32216 * 14 13 11 16 16 C 1.54261 * 110.32743 * 86.44869 * 14 13 11 17 17 C 1.54378 * 105.05925 * 118.89513 * 16 14 13 18 18 N 1.48556 * 104.59476 * 23.85440 * 17 16 14 19 19 C 1.46899 * 110.99975 * 200.95734 * 18 17 16 20 20 C 1.50705 * 109.47204 * 290.12547 * 19 18 17 21 21 C 1.38239 * 119.58632 * 94.72837 * 20 19 18 22 22 C 1.38590 * 119.18498 * 179.77413 * 21 20 19 23 23 C 1.38873 * 118.40163 * 0.49278 * 22 21 20 24 24 F 1.35105 * 120.44508 * 179.72825 * 23 22 21 25 25 C 1.38423 * 119.11127 * 359.74723 * 23 22 21 26 26 N 1.31843 * 119.59112 * 275.00400 * 20 19 18 27 27 C 1.48554 * 104.22374 * 320.51527 * 18 17 16 28 28 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 32 32 H 1.08998 * 110.32750 * 237.79676 * 16 14 13 33 33 H 1.09007 * 110.31954 * 359.89911 * 16 14 13 34 34 H 1.09001 * 110.40999 * 142.63496 * 17 16 14 35 35 H 1.09006 * 110.41329 * 265.07524 * 17 16 14 36 36 H 1.08993 * 109.47077 * 50.12680 * 19 18 17 37 37 H 1.09004 * 109.47262 * 170.12933 * 19 18 17 38 38 H 1.07995 * 120.40239 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.79747 * 180.21837 * 22 21 20 40 40 H 1.08007 * 119.63540 * 180.02562 * 25 23 22 41 41 H 1.09000 * 110.41347 * 280.70067 * 27 18 17 42 42 H 1.09000 * 110.41335 * 158.25697 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 7.4905 -4.7360 0.0064 15 1 8.0008 -3.9791 -0.5891 16 6 8.0320 -4.7358 1.4509 17 6 8.6222 -6.1472 1.6582 18 7 8.9382 -6.6257 0.2878 19 6 9.0359 -8.0910 0.2513 20 6 10.2739 -8.5305 0.9898 21 6 10.1824 -8.8915 2.3211 22 6 11.3253 -9.2988 2.9909 23 6 12.5271 -9.3182 2.2952 24 9 13.6674 -9.7030 2.9092 25 6 12.5411 -8.9377 0.9644 26 7 11.4316 -8.5607 0.3597 27 6 7.7993 -6.1474 -0.5375 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4311 0.8927 30 1 3.6439 -3.4323 -0.8873 31 1 5.4288 -5.2436 0.0045 32 1 8.8091 -3.9800 1.5639 33 1 7.2228 -4.5545 2.1584 34 1 9.5288 -6.0953 2.2612 35 1 7.8882 -6.8009 2.1293 36 1 8.1562 -8.5257 0.7259 37 1 9.0927 -8.4258 -0.7845 38 1 9.2315 -8.8595 2.8320 39 1 11.2831 -9.5899 4.0301 40 1 13.4710 -8.9500 0.4151 41 1 6.9365 -6.8012 -0.4101 42 1 8.0863 -6.0956 -1.5878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266303067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:17 Heat of formation + Delta-G solvation = -59.993876 kcal Electronic energy + Delta-G solvation = -25362.060076 eV Core-core repulsion = 21381.841326 eV Total energy + Delta-G solvation = -3980.218749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01087 -41.41510 -40.88272 -39.35082 -35.71952 -34.66293 -33.55338 -33.41703 -31.43479 -30.66475 -28.92692 -27.83551 -26.66034 -24.96192 -23.38635 -22.46631 -22.15668 -21.19303 -19.88420 -18.65983 -18.30313 -17.98076 -17.87630 -17.13223 -17.11465 -16.86021 -16.78442 -16.29100 -16.06636 -15.45249 -15.26553 -15.02527 -14.88989 -14.77403 -14.56504 -14.46448 -14.10971 -13.85885 -13.70636 -13.46607 -13.33406 -13.02888 -12.81196 -12.74034 -12.56382 -12.44885 -12.37913 -11.85900 -11.75221 -11.16481 -10.99249 -10.94695 -10.58952 -10.51827 -10.14313 -9.94989 -9.47359 -8.98442 -8.50941 -6.21346 -0.16637 0.09860 0.99981 1.31892 1.47414 1.56153 1.57658 2.15982 2.25723 2.50105 2.72795 2.87506 2.97021 3.15303 3.26901 3.49636 3.61060 3.77548 3.82047 3.85663 3.91363 4.07940 4.24989 4.28114 4.29900 4.39296 4.42519 4.49056 4.60954 4.67013 4.79077 4.85250 4.86627 4.92435 4.96079 5.03593 5.13595 5.39681 5.58496 5.71426 5.80369 5.92973 6.12224 6.48196 6.85193 6.94616 7.22025 8.61266 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.001675 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.360324 B =16714.571899 C =16820.023554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.704 5.704 14 C 0.142 3.858 15 H 0.073 0.927 16 C -0.134 4.134 17 C 0.041 3.959 18 N -0.516 5.516 19 C 0.095 3.905 20 C 0.117 3.883 21 C -0.131 4.131 22 C -0.106 4.106 23 C 0.032 3.968 24 F -0.137 7.137 25 C 0.067 3.933 26 N -0.467 5.467 27 C 0.041 3.959 28 H 0.276 0.724 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.417 0.583 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.080 0.920 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.263 -25.128 5.100 33.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.261 4.261 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.358 5.358 14 C 0.036 3.964 15 H 0.091 0.909 16 C -0.173 4.173 17 C -0.087 4.087 18 N -0.241 5.241 19 C -0.033 4.033 20 C -0.022 4.022 21 C -0.151 4.151 22 C -0.132 4.132 23 C 0.010 3.990 24 F -0.116 7.116 25 C -0.092 4.092 26 N -0.176 5.176 27 C -0.087 4.087 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.255 0.745 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.195 0.805 41 H 0.098 0.902 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.955 -23.083 4.035 33.510 hybrid contribution -1.715 -1.053 1.189 2.337 sum 22.240 -24.136 5.223 33.233 Atomic orbital electron populations 1.70019 1.07257 1.28966 1.49193 1.25545 0.95257 1.02191 0.92952 0.85880 0.80683 0.79728 0.80167 1.18790 1.18410 1.16113 1.22464 0.90260 0.96690 1.58144 0.91825 1.84764 1.06410 1.06441 1.97589 1.23274 0.95849 0.99451 1.07572 1.19957 0.89328 0.83423 0.75019 1.90703 1.59318 1.43912 1.49997 1.45812 1.07877 1.06857 1.75303 1.21611 0.79929 0.97967 0.96850 0.90861 1.22695 1.00585 0.97737 0.96313 1.23143 1.00138 0.94690 0.90742 1.65336 1.40376 1.10168 1.08175 1.21163 0.92757 0.87640 1.01705 1.21385 0.93422 0.95289 0.92079 1.22219 1.00440 0.98165 0.94286 1.21977 0.90646 0.98110 1.02484 1.19017 0.83434 1.03155 0.93376 1.91518 1.48392 1.88775 1.82916 1.23154 0.98421 0.96577 0.90999 1.67540 0.98633 1.12231 1.39191 1.23255 0.93396 0.93039 0.98979 0.91409 0.86676 0.86724 0.74490 0.92008 0.90856 0.90452 0.91030 0.89685 0.88525 0.81160 0.81192 0.80514 0.90153 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16 2 C 0.05 2.67 5.50 84.86 0.47 3.14 16 3 Si 0.91 44.74 27.74 68.60 1.90 46.64 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 7 C -0.53 -30.28 10.04 67.95 0.68 -29.60 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 10 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 11 C 0.54 17.35 7.84 87.66 0.69 18.04 16 12 O -0.56 -23.33 15.56 -3.02 -0.05 -23.38 16 13 N -0.70 -14.66 5.04 -438.31 -2.21 -16.87 16 14 C 0.14 2.78 3.36 45.89 0.15 2.94 16 15 H 0.07 1.90 7.64 -2.39 -0.02 1.88 16 16 C -0.13 -2.50 6.78 31.49 0.21 -2.29 16 17 C 0.04 0.52 5.58 86.45 0.48 1.00 16 18 N -0.52 -7.08 5.36 -886.06 -4.75 -11.83 16 19 C 0.10 0.96 5.13 85.56 0.44 1.40 16 20 C 0.12 1.49 5.92 42.56 0.25 1.74 16 21 C -0.13 -1.10 9.14 22.35 0.20 -0.90 16 22 C -0.11 -0.98 10.16 22.51 0.23 -0.75 16 23 C 0.03 0.42 7.35 22.47 0.17 0.58 16 24 F -0.14 -2.00 17.28 44.97 0.78 -1.23 16 25 C 0.07 0.96 11.17 84.73 0.95 1.91 16 26 N -0.47 -7.89 10.27 -183.70 -1.89 -9.78 16 27 C 0.04 0.53 6.19 86.45 0.54 1.06 16 28 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 29 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.42 5.65 8.35 -92.70 -0.77 4.88 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.44 7.95 -2.38 -0.02 1.42 16 34 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 35 H 0.07 0.59 7.82 -2.38 -0.02 0.57 16 36 H 0.09 0.41 7.78 -2.39 -0.02 0.39 16 37 H 0.10 1.03 8.13 -2.38 -0.02 1.01 16 38 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 39 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.08 0.63 7.59 -2.39 -0.02 0.61 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -76.60 371.43 -0.82 -77.42 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.24 Total: 9.13 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.90 Total: -5.23 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -8.54 Total: -93.46 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -76.60 -0.82 -77.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266303067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.431 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds