Wall clock time and date at job start Tue Mar 31 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47206 * 300.00329 * 3 2 1 6 6 H 1.48500 * 109.46803 * 59.99663 * 3 2 1 7 7 C 1.38950 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00238 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00118 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47095 * 173.78093 * 12 10 9 14 14 C 1.46855 * 110.99895 * 169.43346 * 13 12 10 15 15 C 1.53043 * 109.52165 * 185.83867 * 14 13 12 16 16 C 1.53121 * 109.27879 * 300.82309 * 15 14 13 17 17 C 1.53118 * 109.16019 * 57.65323 * 16 15 14 18 18 H 1.09003 * 109.50400 * 62.28711 * 17 16 15 19 19 N 1.46500 * 109.50032 * 182.40255 * 17 16 15 20 20 C 1.34776 * 120.00188 * 274.80529 * 19 17 16 21 21 O 1.21569 * 119.99787 * 359.97438 * 20 19 17 22 22 C 1.47752 * 119.99920 * 180.02562 * 20 19 17 23 23 C 1.39355 * 124.11357 * 179.72282 * 22 20 19 24 24 N 1.30088 * 112.14465 * 179.81996 * 23 22 20 25 25 S 1.55927 * 108.75532 * 0.42991 * 24 23 22 26 26 N 1.31485 * 124.11757 * 0.02562 * 22 20 19 27 27 C 1.46842 * 111.00304 * 293.64537 * 13 12 10 28 28 H 0.96996 * 119.99921 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99511 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47214 * 53.78619 * 12 10 9 31 31 H 1.08994 * 109.47358 * 293.78334 * 12 10 9 32 32 H 1.08993 * 109.46253 * 305.85651 * 14 13 12 33 33 H 1.08994 * 109.46029 * 65.82567 * 14 13 12 34 34 H 1.08998 * 109.49728 * 60.76265 * 15 14 13 35 35 H 1.08997 * 109.49827 * 180.87918 * 15 14 13 36 36 H 1.09000 * 109.51852 * 177.55961 * 16 15 14 37 37 H 1.08999 * 109.52068 * 297.68499 * 16 15 14 38 38 H 0.96998 * 119.99991 * 94.80494 * 19 17 16 39 39 H 1.08007 * 123.92682 * 0.02562 * 23 22 20 40 40 H 1.09003 * 109.46156 * 294.17893 * 27 13 12 41 41 H 1.09001 * 109.46532 * 54.14100 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1912 -5.9755 -0.1468 14 6 1.5320 -7.2646 0.0987 15 6 2.5751 -8.3844 0.0787 16 6 3.2752 -8.3990 -1.2830 17 6 3.9121 -7.0296 -1.5353 18 1 4.6686 -6.8345 -0.7752 19 7 4.5351 -7.0168 -2.8612 20 6 5.7901 -7.4814 -3.0206 21 8 6.4054 -7.9107 -2.0640 22 6 6.4186 -7.4680 -4.3577 23 6 7.7103 -7.9211 -4.6187 24 7 8.0260 -7.8054 -5.8754 25 16 6.8198 -7.1789 -6.6397 26 7 5.8293 -7.0218 -5.4451 27 6 2.8304 -5.9491 -1.4685 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.5364 -4.8746 -0.8273 31 1 0.7027 -4.9698 0.9424 32 1 1.0417 -7.2423 1.0719 33 1 0.7893 -7.4464 -0.6780 34 1 3.3105 -8.2106 0.8642 35 1 2.0833 -9.3427 0.2454 36 1 4.0488 -9.1668 -1.2866 37 1 2.5464 -8.6124 -2.0649 38 1 4.0443 -6.6740 -3.6244 39 1 8.3712 -8.3247 -3.8659 40 1 2.0814 -6.1370 -2.2379 41 1 3.2830 -4.9714 -1.6337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267611136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:34 Heat of formation + Delta-G solvation = -4.602608 kcal Electronic energy + Delta-G solvation = -26675.012332 eV Core-core repulsion = 22717.115490 eV Total energy + Delta-G solvation = -3957.896842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40428 -39.81207 -38.72123 -37.51122 -34.93024 -34.02258 -33.79927 -32.51659 -31.22185 -29.83345 -27.67107 -27.41230 -24.71719 -23.97510 -22.95229 -22.14395 -20.55543 -19.91106 -19.68548 -19.16887 -17.94308 -17.86491 -16.37377 -16.29235 -16.01941 -15.73700 -15.24174 -14.90836 -14.77487 -14.59681 -14.23712 -13.95907 -13.90577 -13.42820 -13.21452 -13.12469 -12.60962 -12.48758 -11.98793 -11.78404 -11.58058 -11.51993 -11.48473 -11.37796 -11.31255 -11.09662 -10.89293 -10.69441 -10.58042 -10.34861 -10.23899 -10.20296 -9.56317 -9.49699 -9.13463 -8.46015 -7.98940 -7.90268 -6.42628 -3.83217 0.09475 1.04807 1.24893 1.28902 2.82613 2.93256 3.15615 3.26446 3.33742 3.89783 3.95948 4.15827 4.25501 4.52702 4.78593 4.82511 4.89616 4.96877 5.04612 5.15335 5.22356 5.25546 5.37753 5.58586 5.61003 5.67856 5.78075 5.82223 5.96305 6.01640 6.07952 6.09154 6.19968 6.26461 6.37078 6.40473 7.19712 7.31437 7.34353 7.54855 7.93720 8.06032 8.61147 9.17806 9.53918 10.05706 10.75237 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.002778 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.193146 B =10078.532201 C =12093.950891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.575 6.575 12 C 0.048 3.952 13 N -0.510 5.510 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.130 4.130 17 C 0.150 3.850 18 H 0.105 0.895 19 N -0.700 5.700 20 C 0.606 3.394 21 O -0.520 6.520 22 C 0.014 3.986 23 C 0.090 3.910 24 N -0.579 5.579 25 S 0.718 5.282 26 N -0.546 5.546 27 C 0.051 3.949 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.407 0.593 39 H 0.215 0.785 40 H 0.028 0.972 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -17.997 -10.872 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.459 6.459 12 C -0.083 4.083 13 N -0.235 5.235 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.168 4.168 17 C 0.046 3.954 18 H 0.123 0.877 19 N -0.350 5.350 20 C 0.386 3.614 21 O -0.395 6.395 22 C -0.161 4.161 23 C -0.103 4.103 24 N -0.419 5.419 25 S 0.759 5.241 26 N -0.396 5.396 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.232 0.768 40 H 0.046 0.954 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.583 -17.598 -11.856 22.217 hybrid contribution -1.006 0.593 0.735 1.380 sum 5.578 -17.004 -11.121 21.070 Atomic orbital electron populations 1.69614 1.05935 1.28033 1.50788 1.25250 0.95620 0.99699 0.97384 0.85817 0.79745 0.81199 0.77702 1.19217 1.20793 1.20741 1.19743 0.93375 0.82190 1.47377 0.87874 1.41887 1.09181 1.04609 1.64517 1.19761 0.88466 0.84534 0.84552 1.90523 1.13588 1.86900 1.54855 1.21858 0.93538 0.91058 1.01879 1.61337 1.31350 1.01439 1.29378 1.22182 0.95307 0.89168 1.00963 1.21516 0.98506 0.97571 0.97402 1.21985 0.99870 0.97231 0.97743 1.21063 0.95957 0.94694 0.83682 0.87734 1.45791 1.14437 1.62584 1.12196 1.16685 0.81573 0.78454 0.84702 1.90845 1.62913 1.46718 1.39043 1.22583 0.94401 1.04703 0.94426 1.23801 0.95027 0.99207 0.92294 1.72271 1.34548 1.23349 1.11767 1.79100 0.89108 1.38431 1.17421 1.72453 1.37783 1.22712 1.06635 1.22325 0.95409 1.00765 0.89254 0.91944 0.77527 0.93483 0.88961 0.90430 0.95116 0.90517 0.91245 0.91307 0.92184 0.75723 0.76826 0.95366 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.07 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.18 7.31 -10.99 -0.08 10.10 16 11 O -0.57 -15.25 14.28 5.54 0.08 -15.17 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 13 N -0.51 -8.17 4.35 -236.11 -1.03 -9.20 16 14 C 0.05 0.63 5.46 -3.83 -0.02 0.61 16 15 C -0.11 -1.23 6.09 -26.65 -0.16 -1.39 16 16 C -0.13 -1.49 5.58 -26.61 -0.15 -1.64 16 17 C 0.15 2.08 2.62 -67.85 -0.18 1.91 16 18 H 0.10 1.74 7.58 -51.93 -0.39 1.35 16 19 N -0.70 -8.83 5.08 -54.70 -0.28 -9.11 16 20 C 0.61 8.01 7.79 -12.37 -0.10 7.91 16 21 O -0.52 -8.09 16.47 5.30 0.09 -8.01 16 22 C 0.01 0.16 6.81 -83.71 -0.57 -0.41 16 23 C 0.09 0.89 11.22 -17.87 -0.20 0.69 16 24 N -0.58 -5.55 11.41 19.43 0.22 -5.33 16 25 S 0.72 5.51 23.69 -107.50 -2.55 2.97 16 26 N -0.55 -5.61 11.00 23.18 0.26 -5.35 16 27 C 0.05 0.79 4.59 -3.84 -0.02 0.77 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 30 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 31 H 0.09 1.43 7.98 -51.93 -0.41 1.02 16 32 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.41 4.62 8.19 -40.82 -0.33 4.28 16 39 H 0.22 1.72 8.06 -52.48 -0.42 1.29 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 2.00 6.05 -51.93 -0.31 1.69 16 LS Contribution 359.78 15.07 5.42 5.42 Total: -1.00 -32.74 359.78 -8.97 -41.71 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.09 Total: 12.39 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -1.74 Total: 11.49 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.16 Total: -66.76 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -2.55 Total: 2.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.74 -8.97 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267611136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.112 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds