Wall clock time and date at job start Tue Mar 31 2020 22:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47449 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47206 * 300.00329 * 3 2 1 6 6 H 1.48500 * 109.46803 * 59.99663 * 3 2 1 7 7 C 1.38950 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00238 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00118 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47095 * 173.78093 * 12 10 9 14 14 C 1.46855 * 110.99895 * 169.43346 * 13 12 10 15 15 C 1.53043 * 109.52165 * 185.83867 * 14 13 12 16 16 C 1.53121 * 109.27879 * 300.82309 * 15 14 13 17 17 C 1.53118 * 109.16019 * 57.65323 * 16 15 14 18 18 H 1.09003 * 109.50400 * 62.28711 * 17 16 15 19 19 N 1.46500 * 109.50032 * 182.40255 * 17 16 15 20 20 C 1.34776 * 120.00188 * 274.80529 * 19 17 16 21 21 O 1.21569 * 119.99787 * 359.97438 * 20 19 17 22 22 C 1.47752 * 119.99920 * 180.02562 * 20 19 17 23 23 C 1.39355 * 124.11357 * 179.72282 * 22 20 19 24 24 N 1.30088 * 112.14465 * 179.81996 * 23 22 20 25 25 S 1.55927 * 108.75532 * 0.42991 * 24 23 22 26 26 N 1.31485 * 124.11757 * 0.02562 * 22 20 19 27 27 C 1.46842 * 111.00304 * 293.64537 * 13 12 10 28 28 H 0.96996 * 119.99921 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99511 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47214 * 53.78619 * 12 10 9 31 31 H 1.08994 * 109.47358 * 293.78334 * 12 10 9 32 32 H 1.08993 * 109.46253 * 305.85651 * 14 13 12 33 33 H 1.08994 * 109.46029 * 65.82567 * 14 13 12 34 34 H 1.08998 * 109.49728 * 60.76265 * 15 14 13 35 35 H 1.08997 * 109.49827 * 180.87918 * 15 14 13 36 36 H 1.09000 * 109.51852 * 177.55961 * 16 15 14 37 37 H 1.08999 * 109.52068 * 297.68499 * 16 15 14 38 38 H 0.96998 * 119.99991 * 94.80494 * 19 17 16 39 39 H 1.08007 * 123.92682 * 0.02562 * 23 22 20 40 40 H 1.09003 * 109.46156 * 294.17893 * 27 13 12 41 41 H 1.09001 * 109.46532 * 54.14100 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0022 13 7 2.1912 -5.9755 -0.1468 14 6 1.5320 -7.2646 0.0987 15 6 2.5751 -8.3844 0.0787 16 6 3.2752 -8.3990 -1.2830 17 6 3.9121 -7.0296 -1.5353 18 1 4.6686 -6.8345 -0.7752 19 7 4.5351 -7.0168 -2.8612 20 6 5.7901 -7.4814 -3.0206 21 8 6.4054 -7.9107 -2.0640 22 6 6.4186 -7.4680 -4.3577 23 6 7.7103 -7.9211 -4.6187 24 7 8.0260 -7.8054 -5.8754 25 16 6.8198 -7.1789 -6.6397 26 7 5.8293 -7.0218 -5.4451 27 6 2.8304 -5.9491 -1.4685 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.5364 -4.8746 -0.8273 31 1 0.7027 -4.9698 0.9424 32 1 1.0417 -7.2423 1.0719 33 1 0.7893 -7.4464 -0.6780 34 1 3.3105 -8.2106 0.8642 35 1 2.0833 -9.3427 0.2454 36 1 4.0488 -9.1668 -1.2866 37 1 2.5464 -8.6124 -2.0649 38 1 4.0443 -6.6740 -3.6244 39 1 8.3712 -8.3247 -3.8659 40 1 2.0814 -6.1370 -2.2379 41 1 3.2830 -4.9714 -1.6337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267611136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:33 Heat of formation + Delta-G solvation = -31.537636 kcal Electronic energy + Delta-G solvation = -26676.180322 eV Core-core repulsion = 22717.115490 eV Total energy + Delta-G solvation = -3959.064833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24181 -40.95019 -40.12415 -38.96244 -36.16364 -35.79991 -34.72549 -33.64368 -33.20817 -30.89896 -29.00816 -28.40545 -26.51056 -24.90805 -24.21109 -23.11894 -21.57961 -21.04325 -20.83819 -20.40777 -19.85799 -18.90546 -17.72857 -17.41493 -17.18576 -16.69848 -16.54285 -16.34902 -16.08635 -15.78343 -15.71498 -15.37811 -15.15714 -14.78555 -14.53034 -14.36590 -13.79046 -13.56545 -13.33990 -13.23519 -13.04404 -12.74419 -12.58629 -12.40335 -12.34801 -12.30650 -12.13366 -12.12916 -11.94439 -11.76808 -11.63011 -11.44634 -11.21887 -10.39438 -10.26473 -10.09581 -9.97902 -9.19965 -8.46211 -5.94170 -0.69606 0.30759 0.41394 0.60061 1.35746 1.41114 1.54869 1.83287 1.96282 2.07520 2.28775 2.81365 3.21108 3.32582 3.42774 3.58974 3.80491 3.83896 3.99419 4.06191 4.16032 4.26398 4.34284 4.44804 4.45710 4.57151 4.64721 4.68846 4.73830 4.93255 4.99507 5.07312 5.20273 5.21475 5.32253 5.41636 5.43492 5.88948 6.07508 6.23308 6.31492 6.62431 6.93132 7.14809 7.58719 8.15218 8.71480 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.002778 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.193146 B =10078.532201 C =12093.950891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.989 3.011 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.052 3.948 15 C -0.108 4.108 16 C -0.120 4.120 17 C 0.157 3.843 18 H 0.067 0.933 19 N -0.696 5.696 20 C 0.605 3.395 21 O -0.552 6.552 22 C -0.006 4.006 23 C 0.089 3.911 24 N -0.598 5.598 25 S 0.801 5.199 26 N -0.566 5.566 27 C 0.059 3.941 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.225 0.775 40 H 0.049 0.951 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 -19.015 -12.099 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.075 4.075 15 C -0.146 4.146 16 C -0.159 4.159 17 C 0.052 3.948 18 H 0.086 0.914 19 N -0.347 5.347 20 C 0.386 3.614 21 O -0.429 6.429 22 C -0.179 4.179 23 C -0.102 4.102 24 N -0.440 5.440 25 S 0.842 5.158 26 N -0.418 5.418 27 C -0.070 4.070 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.241 0.759 40 H 0.067 0.933 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.415 -18.637 -13.075 23.401 hybrid contribution -0.617 0.900 0.987 1.472 sum 4.798 -17.737 -12.088 21.994 Atomic orbital electron populations 1.69666 1.06722 1.29144 1.50617 1.25975 0.96513 1.02227 0.96457 0.84923 0.77977 0.77402 0.78358 1.20052 1.19533 1.19626 1.19645 0.92550 0.84073 1.49635 0.90606 1.41942 1.09294 1.04661 1.65387 1.20859 0.88328 0.86007 0.82101 1.90503 1.15805 1.87820 1.55959 1.21733 0.93172 0.88123 1.04012 1.61286 1.32067 1.02847 1.29744 1.22308 0.95759 0.87086 1.02337 1.21534 0.98022 0.98699 0.96326 1.21917 1.00042 0.95090 0.98819 1.20871 0.94617 0.95883 0.83383 0.91428 1.45743 1.14550 1.62437 1.11941 1.16946 0.81364 0.77728 0.85344 1.90817 1.63560 1.48188 1.40376 1.22226 0.95066 1.06846 0.93728 1.23858 0.94691 0.98997 0.92676 1.72183 1.35816 1.24164 1.11818 1.78786 0.86918 1.35183 1.14940 1.72249 1.39250 1.23011 1.07283 1.22136 0.96055 0.98860 0.89944 0.91344 0.76997 0.91147 0.86645 0.89092 0.93091 0.92183 0.88062 0.91618 0.90293 0.74940 0.75885 0.93252 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.58 -29.27 5.29 -306.98 -1.62 -30.90 16 10 C 0.44 20.72 7.31 87.66 0.64 21.37 16 11 O -0.62 -34.13 14.28 -3.09 -0.04 -34.18 16 12 C 0.06 2.02 5.45 85.56 0.47 2.48 16 13 N -0.53 -16.66 4.35 -900.93 -3.92 -20.58 16 14 C 0.05 1.12 5.46 86.33 0.47 1.59 16 15 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 16 C -0.12 -2.60 5.58 30.67 0.17 -2.43 16 17 C 0.16 4.44 2.62 45.04 0.12 4.56 16 18 H 0.07 2.41 7.58 -2.39 -0.02 2.40 16 19 N -0.70 -17.94 5.08 -445.25 -2.26 -20.20 16 20 C 0.60 16.47 7.79 86.76 0.68 17.14 16 21 O -0.55 -17.97 16.47 -3.93 -0.06 -18.04 16 22 C -0.01 -0.13 6.81 41.98 0.29 0.16 16 23 C 0.09 1.72 11.22 85.22 0.96 2.68 16 24 N -0.60 -10.67 11.41 -92.44 -1.05 -11.72 16 25 S 0.80 10.81 23.69 -56.49 -1.34 9.47 16 26 N -0.57 -11.07 11.00 -80.58 -0.89 -11.96 16 27 C 0.06 1.83 4.59 86.33 0.40 2.22 16 28 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 30 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 31 H 0.12 3.33 7.98 -2.39 -0.02 3.31 16 32 H 0.09 1.75 8.01 -2.39 -0.02 1.73 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.41 9.41 8.19 -92.71 -0.76 8.65 16 39 H 0.22 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 2.38 6.05 -2.39 -0.01 2.36 16 Total: -1.00 -73.41 359.78 -3.62 -77.03 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.39 Total: 35.29 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 5.65 Total: 29.74 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -9.46 Total: -144.52 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.11 Total: -52.22 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 10.81 SS G_CDS: -1.34 Total: 9.47 kcal Total: -73.41 -3.62 -77.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267611136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.489 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds