Wall clock time and date at job start Tue Mar 31 2020 22:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99617 * 2 1 4 4 H 1.48499 * 109.47304 * 240.00211 * 3 2 1 5 5 H 1.48497 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46751 * 120.00337 * 3 2 1 7 7 C 1.38950 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00183 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47151 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00056 * 66.04430 * 13 12 10 15 15 C 1.53035 * 109.52744 * 185.84176 * 14 13 12 16 16 C 1.53124 * 109.27475 * 300.82106 * 15 14 13 17 17 C 1.53123 * 109.16220 * 57.64849 * 16 15 14 18 18 H 1.09000 * 109.49827 * 62.29028 * 17 16 15 19 19 N 1.46494 * 109.53299 * 182.38317 * 17 16 15 20 20 C 1.34776 * 120.00457 * 274.82166 * 19 17 16 21 21 O 1.21610 * 119.99863 * 0.02562 * 20 19 17 22 22 C 1.47447 * 120.00539 * 180.02562 * 20 19 17 23 23 C 1.37974 * 124.15993 * 179.73086 * 22 20 19 24 24 S 1.72100 * 104.03581 * 179.90073 * 23 22 20 25 25 N 1.56403 * 96.15377 * 0.32509 * 24 23 22 26 26 N 1.27421 * 109.87482 * 359.79831 * 25 24 23 27 27 C 1.46846 * 110.99964 * 190.25398 * 13 12 10 28 28 H 0.96993 * 120.00642 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99814 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47234 * 59.99638 * 12 10 9 31 31 H 1.09004 * 109.46525 * 299.99963 * 12 10 9 32 32 H 1.09008 * 109.46456 * 305.85644 * 14 13 12 33 33 H 1.09003 * 109.46474 * 65.82149 * 14 13 12 34 34 H 1.08993 * 109.50220 * 60.75645 * 15 14 13 35 35 H 1.08992 * 109.50519 * 180.88040 * 15 14 13 36 36 H 1.09001 * 109.52183 * 297.74731 * 16 15 14 37 37 H 1.08995 * 109.52235 * 177.55901 * 16 15 14 38 38 H 0.97006 * 119.99927 * 94.83265 * 19 17 16 39 39 H 1.08003 * 127.98133 * 359.96754 * 23 22 20 40 40 H 1.09009 * 109.46169 * 294.17270 * 27 13 12 41 41 H 1.08995 * 109.46669 * 54.15371 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9637 -6.0183 1.2512 15 6 4.0440 -7.0982 1.1576 16 6 3.3818 -8.4546 0.8999 17 6 2.5522 -8.3729 -0.3846 18 1 3.2081 -8.1581 -1.2282 19 7 1.8693 -9.6494 -0.6085 20 6 2.5074 -10.6529 -1.2429 21 8 3.6503 -10.4989 -1.6289 22 6 1.8199 -11.9376 -1.4688 23 6 2.3884 -13.0180 -2.1117 24 16 1.1537 -14.2166 -2.0849 25 7 0.0911 -13.3461 -1.3372 26 7 0.5751 -12.1950 -1.0833 27 6 1.5153 -7.2560 -0.2462 28 1 -0.4851 0.8399 0.0004 29 1 0.3535 -2.3907 -0.0005 30 1 0.6177 -4.9205 -0.8913 31 1 0.6170 -4.9208 0.8887 32 1 3.4329 -5.0490 1.4205 33 1 2.2929 -6.2464 2.0795 34 1 4.7232 -6.8633 0.3382 35 1 4.6015 -7.1373 2.0933 36 1 2.7321 -8.7077 1.7376 37 1 4.1501 -9.2198 0.7894 38 1 0.9578 -9.7725 -0.3004 39 1 3.3798 -13.0942 -2.5333 40 1 0.8513 -7.4784 0.5892 41 1 0.9325 -7.1859 -1.1647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267616210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:26 Heat of formation + Delta-G solvation = 8.402989 kcal Electronic energy + Delta-G solvation = -26261.340216 eV Core-core repulsion = 22304.007339 eV Total energy + Delta-G solvation = -3957.332877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53267 -39.98840 -38.86335 -37.54838 -34.93649 -33.84593 -32.85841 -32.42773 -31.19008 -29.81226 -27.60202 -27.34470 -24.73953 -24.48237 -22.84632 -22.32758 -21.17526 -20.16867 -19.36833 -19.14803 -17.87024 -17.25869 -16.47782 -16.40770 -15.98831 -15.95703 -15.24285 -14.91094 -14.88089 -14.62773 -14.28357 -13.97947 -13.80941 -13.45967 -13.24166 -13.21062 -13.06690 -12.57929 -12.44738 -12.06864 -11.53201 -11.45021 -11.33212 -11.04640 -10.90729 -10.83805 -10.66001 -10.57126 -10.53928 -10.43332 -10.41539 -10.31002 -10.20054 -9.44733 -9.30115 -8.44349 -7.97322 -7.86284 -6.40510 -3.81267 -0.42871 0.42112 0.99992 1.03925 2.69556 2.78258 3.21056 3.26748 3.31054 3.36528 3.91063 4.01799 4.20623 4.26514 4.45451 4.71728 4.77923 4.88925 5.05290 5.11334 5.25910 5.30877 5.36254 5.58166 5.61624 5.71852 5.80757 5.90801 5.94226 6.04845 6.08818 6.17863 6.28916 6.46975 6.55526 6.90646 7.20052 7.27976 7.37844 7.56255 7.78035 8.07327 8.62968 9.19237 9.55553 10.07373 10.77147 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.001869 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.926946 B =14975.118977 C =15459.878740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.576 6.576 12 C 0.048 3.952 13 N -0.510 5.510 14 C 0.049 3.951 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.148 3.852 18 H 0.104 0.896 19 N -0.703 5.703 20 C 0.606 3.394 21 O -0.520 6.520 22 C -0.022 4.022 23 C -0.235 4.235 24 S 0.462 5.538 25 N -0.289 5.289 26 N -0.211 5.211 27 C 0.050 3.950 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.023 0.977 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.408 0.592 39 H 0.210 0.790 40 H 0.036 0.964 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 -28.350 -1.814 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.083 4.083 13 N -0.235 5.235 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.168 4.168 17 C 0.044 3.956 18 H 0.122 0.878 19 N -0.354 5.354 20 C 0.386 3.614 21 O -0.395 6.395 22 C -0.169 4.169 23 C -0.392 4.392 24 S 0.598 5.402 25 N -0.270 5.270 26 N -0.082 5.082 27 C -0.079 4.079 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.227 0.773 40 H 0.055 0.945 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.014 -28.939 -2.212 29.023 hybrid contribution -0.191 1.636 0.695 1.787 sum -0.206 -27.303 -1.517 27.346 Atomic orbital electron populations 1.69600 1.05923 1.28245 1.50600 1.25260 0.95635 0.99715 0.97366 0.85918 0.78749 0.80485 0.79065 1.19889 1.21022 1.19940 1.19644 0.93334 0.82196 1.47623 0.87942 1.41855 1.09185 1.04567 1.64467 1.19698 0.88414 0.84495 0.84479 1.90488 1.13642 1.86837 1.55023 1.21838 0.93826 0.91058 1.01626 1.61383 1.25119 1.00656 1.36342 1.22333 0.95191 1.01858 0.88435 1.21502 0.98137 0.92823 1.02368 1.21993 0.99402 0.98710 0.96669 1.21081 0.94197 0.80627 0.99699 0.87835 1.45867 1.18328 1.13371 1.57827 1.16595 0.85185 0.81263 0.78346 1.90873 1.16581 1.80992 1.51006 1.22729 0.91513 0.98747 1.03903 1.28920 1.08971 0.97203 1.04156 1.81598 0.97215 1.20708 1.40666 1.78659 1.25666 1.03645 1.19002 1.71535 1.09946 1.09645 1.17027 1.22251 0.94791 0.89587 1.01281 0.91843 0.77500 0.89265 0.93341 0.87535 0.95891 0.90494 0.91329 0.92140 0.91443 0.75605 0.77326 0.94547 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 10 C 0.44 10.32 7.46 -10.98 -0.08 10.24 16 11 O -0.58 -15.24 13.92 5.55 0.08 -15.16 16 12 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 13 N -0.51 -8.32 4.39 -236.11 -1.04 -9.36 16 14 C 0.05 0.78 5.11 -3.84 -0.02 0.76 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.65 16 16 C -0.13 -1.54 5.58 -26.60 -0.15 -1.68 16 17 C 0.15 1.80 2.62 -67.85 -0.18 1.62 16 18 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 19 N -0.70 -7.38 5.08 -54.80 -0.28 -7.66 16 20 C 0.61 6.95 7.78 -12.51 -0.10 6.85 16 21 O -0.52 -7.38 16.46 5.27 0.09 -7.29 16 22 C -0.02 -0.20 6.87 -83.78 -0.58 -0.78 16 23 C -0.24 -1.53 11.21 30.64 0.34 -1.19 16 24 S 0.46 2.26 23.38 -107.50 -2.51 -0.25 16 25 N -0.29 -2.55 12.49 60.35 0.75 -1.80 16 26 N -0.21 -2.09 11.24 32.73 0.37 -1.73 16 27 C 0.05 0.63 4.93 -3.84 -0.02 0.61 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 29 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 30 H 0.09 1.41 7.98 -51.93 -0.41 1.00 16 31 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.11 2.08 5.80 -51.92 -0.30 1.78 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.41 3.65 8.19 -40.82 -0.33 3.32 16 39 H 0.21 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -33.15 360.39 -7.75 -40.90 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.07 Total: 11.20 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.21 Total: 7.67 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.47 Total: -58.52 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.16 Total: -22.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.51 Total: -0.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.15 -7.75 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267616210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.298 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds