Wall clock time and date at job start Tue Mar 31 2020 22:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99617 * 2 1 4 4 H 1.48499 * 109.47304 * 240.00211 * 3 2 1 5 5 H 1.48497 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46751 * 120.00337 * 3 2 1 7 7 C 1.38950 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00132 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00183 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47151 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00056 * 66.04430 * 13 12 10 15 15 C 1.53035 * 109.52744 * 185.84176 * 14 13 12 16 16 C 1.53124 * 109.27475 * 300.82106 * 15 14 13 17 17 C 1.53123 * 109.16220 * 57.64849 * 16 15 14 18 18 H 1.09000 * 109.49827 * 62.29028 * 17 16 15 19 19 N 1.46494 * 109.53299 * 182.38317 * 17 16 15 20 20 C 1.34776 * 120.00457 * 274.82166 * 19 17 16 21 21 O 1.21610 * 119.99863 * 0.02562 * 20 19 17 22 22 C 1.47447 * 120.00539 * 180.02562 * 20 19 17 23 23 C 1.37974 * 124.15993 * 179.73086 * 22 20 19 24 24 S 1.72100 * 104.03581 * 179.90073 * 23 22 20 25 25 N 1.56403 * 96.15377 * 0.32509 * 24 23 22 26 26 N 1.27421 * 109.87482 * 359.79831 * 25 24 23 27 27 C 1.46846 * 110.99964 * 190.25398 * 13 12 10 28 28 H 0.96993 * 120.00642 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99814 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47234 * 59.99638 * 12 10 9 31 31 H 1.09004 * 109.46525 * 299.99963 * 12 10 9 32 32 H 1.09008 * 109.46456 * 305.85644 * 14 13 12 33 33 H 1.09003 * 109.46474 * 65.82149 * 14 13 12 34 34 H 1.08993 * 109.50220 * 60.75645 * 15 14 13 35 35 H 1.08992 * 109.50519 * 180.88040 * 15 14 13 36 36 H 1.09001 * 109.52183 * 297.74731 * 16 15 14 37 37 H 1.08995 * 109.52235 * 177.55901 * 16 15 14 38 38 H 0.97006 * 119.99927 * 94.83265 * 19 17 16 39 39 H 1.08003 * 127.98133 * 359.96754 * 23 22 20 40 40 H 1.09009 * 109.46169 * 294.17270 * 27 13 12 41 41 H 1.08995 * 109.46669 * 54.15371 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9637 -6.0183 1.2512 15 6 4.0440 -7.0982 1.1576 16 6 3.3818 -8.4546 0.8999 17 6 2.5522 -8.3729 -0.3846 18 1 3.2081 -8.1581 -1.2282 19 7 1.8693 -9.6494 -0.6085 20 6 2.5074 -10.6529 -1.2429 21 8 3.6503 -10.4989 -1.6289 22 6 1.8199 -11.9376 -1.4688 23 6 2.3884 -13.0180 -2.1117 24 16 1.1537 -14.2166 -2.0849 25 7 0.0911 -13.3461 -1.3372 26 7 0.5751 -12.1950 -1.0833 27 6 1.5153 -7.2560 -0.2462 28 1 -0.4851 0.8399 0.0004 29 1 0.3535 -2.3907 -0.0005 30 1 0.6177 -4.9205 -0.8913 31 1 0.6170 -4.9208 0.8887 32 1 3.4329 -5.0490 1.4205 33 1 2.2929 -6.2464 2.0795 34 1 4.7232 -6.8633 0.3382 35 1 4.6015 -7.1373 2.0933 36 1 2.7321 -8.7077 1.7376 37 1 4.1501 -9.2198 0.7894 38 1 0.9578 -9.7725 -0.3004 39 1 3.3798 -13.0942 -2.5333 40 1 0.8513 -7.4784 0.5892 41 1 0.9325 -7.1859 -1.1647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267616210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:26 Heat of formation + Delta-G solvation = -18.582722 kcal Electronic energy + Delta-G solvation = -26262.510404 eV Core-core repulsion = 22304.007339 eV Total energy + Delta-G solvation = -3958.503065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19057 -41.00398 -40.24506 -39.01177 -36.19736 -35.65246 -33.92861 -33.26063 -33.10967 -30.82039 -28.97361 -28.08273 -26.50364 -25.39945 -24.07236 -23.34728 -21.88181 -21.16090 -20.97031 -20.17549 -19.84636 -18.06409 -17.68740 -17.26193 -17.11606 -16.82617 -16.52255 -16.28710 -16.15340 -15.79723 -15.73168 -15.31898 -15.14468 -14.81593 -14.50778 -14.43037 -13.85846 -13.68058 -13.50573 -13.43217 -13.05017 -12.98988 -12.68925 -12.41517 -12.39831 -12.12824 -11.97012 -11.82990 -11.63887 -11.51328 -11.37124 -11.25152 -11.17720 -10.90885 -10.26561 -10.19795 -9.97577 -9.21126 -8.44493 -5.92727 -0.94442 -0.05773 0.29630 0.52944 1.40590 1.42239 1.52939 1.84224 1.98187 2.08232 2.30484 2.67026 2.88476 3.22434 3.39478 3.60252 3.67761 3.81744 3.87340 4.03896 4.16148 4.28906 4.35181 4.36991 4.43374 4.54144 4.60279 4.60657 4.71707 4.88648 4.98853 5.02838 5.20951 5.26602 5.39803 5.43079 5.89132 6.08597 6.19492 6.20442 6.52451 6.63322 6.95272 7.15450 7.59359 8.15491 8.72645 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.001869 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.926946 B =14975.118977 C =15459.878740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.060 3.940 13 N -0.532 5.532 14 C 0.052 3.948 15 C -0.104 4.104 16 C -0.119 4.119 17 C 0.155 3.845 18 H 0.077 0.923 19 N -0.694 5.694 20 C 0.606 3.394 21 O -0.555 6.555 22 C -0.044 4.044 23 C -0.238 4.238 24 S 0.564 5.436 25 N -0.331 5.331 26 N -0.231 5.231 27 C 0.055 3.945 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.227 0.773 40 H 0.060 0.940 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 -30.434 -1.848 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.258 5.258 14 C -0.075 4.075 15 C -0.142 4.142 16 C -0.158 4.158 17 C 0.050 3.950 18 H 0.095 0.905 19 N -0.345 5.345 20 C 0.388 3.612 21 O -0.432 6.432 22 C -0.192 4.192 23 C -0.394 4.394 24 S 0.699 5.301 25 N -0.312 5.312 26 N -0.101 5.101 27 C -0.074 4.074 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.255 0.745 39 H 0.244 0.756 40 H 0.078 0.922 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.095 -31.046 -2.234 31.145 hybrid contribution 0.164 2.089 0.641 2.192 sum -0.931 -28.956 -1.593 29.015 Atomic orbital electron populations 1.69661 1.06763 1.29269 1.50493 1.26018 0.96551 1.02352 0.96459 0.85006 0.77751 0.76793 0.78889 1.19847 1.19553 1.19725 1.19603 0.92663 0.83999 1.49761 0.90342 1.41921 1.09299 1.04656 1.65367 1.20757 0.88322 0.85913 0.82142 1.90471 1.15681 1.87724 1.55977 1.21705 0.93441 0.88236 1.03711 1.61292 1.25743 1.01948 1.36785 1.22203 0.95886 1.00371 0.89048 1.21434 0.97321 0.93127 1.02341 1.21896 0.99458 0.97312 0.97105 1.20842 0.93924 0.81380 0.98843 0.90473 1.45715 1.18601 1.12574 1.57569 1.16841 0.84816 0.81936 0.77572 1.90851 1.18072 1.81783 1.52466 1.22492 0.92128 0.98634 1.05983 1.29291 1.10253 0.97126 1.02769 1.81239 0.94212 1.17459 1.37173 1.78329 1.27923 1.04114 1.20855 1.71564 1.10115 1.10463 1.17917 1.22262 0.94840 0.87596 1.02653 0.91368 0.77024 0.87071 0.91028 0.91737 0.94146 0.92741 0.89771 0.90338 0.91667 0.74451 0.75585 0.92174 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 3 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.47 5.29 -306.99 -1.62 -31.09 16 10 C 0.44 20.93 7.46 87.66 0.65 21.58 16 11 O -0.61 -33.73 13.92 -3.04 -0.04 -33.77 16 12 C 0.06 2.04 5.45 85.56 0.47 2.51 16 13 N -0.53 -17.01 4.39 -900.92 -3.96 -20.97 16 14 C 0.05 1.66 5.11 86.33 0.44 2.11 16 15 C -0.10 -2.80 6.09 30.65 0.19 -2.61 16 16 C -0.12 -2.70 5.58 30.68 0.17 -2.53 16 17 C 0.15 3.63 2.62 45.04 0.12 3.75 16 18 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 19 N -0.69 -13.80 5.08 -445.54 -2.26 -16.06 16 20 C 0.61 13.54 7.78 86.67 0.67 14.21 16 21 O -0.55 -15.75 16.46 -4.06 -0.07 -15.81 16 22 C -0.04 -0.79 6.87 41.36 0.28 -0.50 16 23 C -0.24 -2.59 11.21 67.76 0.76 -1.83 16 24 S 0.56 3.93 23.38 -56.49 -1.32 2.61 16 25 N -0.33 -5.25 12.49 37.02 0.46 -4.78 16 26 N -0.23 -4.29 11.24 -50.35 -0.57 -4.85 16 27 C 0.05 1.27 4.93 86.32 0.43 1.70 16 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 30 H 0.11 3.31 7.98 -2.39 -0.02 3.29 16 31 H 0.07 2.14 8.12 -2.38 -0.02 2.12 16 32 H 0.06 2.62 5.80 -2.38 -0.01 2.60 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.42 6.79 8.19 -92.70 -0.76 6.03 16 39 H 0.23 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.09 1.94 8.01 -2.39 -0.02 1.92 16 Total: -1.00 -74.33 360.39 -2.00 -76.33 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.39 Total: 32.59 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.46 Total: 20.08 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -7.66 Total: -127.31 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.11 Total: -49.59 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.32 Total: 2.61 kcal Total: -74.33 -2.00 -76.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267616210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.743 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds