Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15 19 19 C 1.47703 * 120.00118 * 180.02562 * 17 16 15 20 20 C 1.39674 * 120.15605 * 359.72858 * 19 17 16 21 21 C 1.37850 * 119.92731 * 179.69877 * 20 19 17 22 22 C 1.38450 * 120.23370 * 0.60111 * 21 20 19 23 23 C 1.38383 * 120.31788 * 359.66996 * 22 21 20 24 24 F 1.35100 * 119.96391 * 180.02562 * 23 22 21 25 25 C 1.38537 * 120.07201 * 0.03049 * 23 22 21 26 26 F 1.35098 * 120.12325 * 180.02562 * 25 23 22 27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 34 34 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 35 35 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 36 36 H 1.08005 * 120.03536 * 359.97438 * 20 19 17 37 37 H 1.07998 * 119.88105 * 180.27703 * 21 20 19 38 38 H 1.07997 * 119.83581 * 179.70183 * 22 21 20 39 39 H 1.08994 * 113.48196 * 253.46980 * 27 13 12 40 40 H 1.09003 * 113.47819 * 23.94188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 1.7254 -8.8242 -1.7276 17 6 2.4246 -9.7899 -2.3561 18 8 3.6252 -9.8789 -2.1869 19 6 1.7323 -10.7399 -3.2503 20 6 0.3522 -10.6441 -3.4426 21 6 -0.2882 -11.5294 -4.2831 22 6 0.4299 -12.5218 -4.9283 23 6 1.7967 -12.6293 -4.7406 24 9 2.4905 -13.6001 -5.3742 25 6 2.4544 -11.7427 -3.9036 26 9 3.7888 -11.8464 -3.7200 27 6 1.5115 -7.2624 0.2370 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 1.6687 -6.2094 -2.0777 33 1 3.4527 -6.1559 -1.7451 34 1 3.3646 -8.2559 -0.4659 35 1 0.7674 -8.7533 -1.8623 36 1 -0.2120 -9.8744 -2.9368 37 1 -1.3547 -11.4518 -4.4347 38 1 -0.0791 -13.2149 -5.5816 39 1 1.6845 -7.6690 1.2333 40 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267657117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = -82.103961 kcal Electronic energy + Delta-G solvation = -27742.846084 eV Core-core repulsion = 23195.455393 eV Total energy + Delta-G solvation = -4547.390691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.88943 -48.93833 -40.90796 -39.83351 -38.50253 -37.70258 -34.45865 -33.86189 -31.93077 -31.25663 -30.96624 -29.72577 -26.00032 -25.92142 -24.85298 -23.62269 -23.12899 -21.20953 -20.46518 -19.28502 -18.83647 -17.96501 -17.84387 -17.62674 -16.82664 -16.74811 -16.48640 -16.12960 -15.52206 -15.47855 -15.27610 -15.12278 -14.94065 -14.60574 -14.56119 -14.24707 -13.84856 -13.54446 -13.29744 -12.97920 -12.75596 -12.63678 -12.61798 -12.32479 -12.26610 -11.66452 -11.55519 -11.27674 -11.10135 -10.71429 -10.35628 -10.33966 -10.22469 -9.77004 -9.51695 -9.35839 -9.29294 -8.90324 -8.24420 -7.96725 -6.42484 -3.83030 -0.05175 0.31022 2.21469 2.54761 3.01487 3.16052 3.20779 3.26716 3.34442 3.79902 3.85121 3.89683 3.99578 4.03707 4.16102 4.22558 4.34302 4.42229 4.72655 4.91412 4.95128 5.05998 5.11729 5.25568 5.26297 5.26718 5.27789 5.46963 5.53358 5.60414 5.62349 5.77573 5.99332 6.04039 6.15474 6.24620 6.45024 7.01884 7.10437 7.55181 7.79264 8.05771 8.61430 9.18257 9.53702 10.06148 10.75479 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.001812 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.203536 B =15446.730408 C =15737.878078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.573 6.573 12 C 0.011 3.989 13 N -0.433 5.433 14 C -0.009 4.009 15 C 0.118 3.882 16 N -0.710 5.710 17 C 0.559 3.441 18 O -0.513 6.513 19 C -0.145 4.145 20 C -0.067 4.067 21 C -0.108 4.108 22 C -0.101 4.101 23 C 0.058 3.942 24 F -0.124 7.124 25 C 0.128 3.872 26 F -0.102 7.102 27 C -0.013 4.013 28 H 0.270 0.730 29 H 0.391 0.609 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.400 0.600 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 -25.884 -8.643 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.230 3.770 11 O -0.455 6.455 12 C -0.121 4.121 13 N -0.156 5.156 14 C -0.139 4.139 15 C 0.013 3.987 16 N -0.362 5.362 17 C 0.345 3.655 18 O -0.388 6.388 19 C -0.149 4.149 20 C -0.086 4.086 21 C -0.126 4.126 22 C -0.120 4.120 23 C 0.038 3.962 24 F -0.102 7.102 25 C 0.106 3.894 26 F -0.079 7.079 27 C -0.143 4.143 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.151 0.849 35 H 0.236 0.764 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.113 0.887 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.141 -25.546 -8.067 27.484 hybrid contribution -1.244 0.636 -0.707 1.566 sum -7.385 -24.909 -8.774 27.423 Atomic orbital electron populations 1.69618 1.05917 1.27999 1.51000 1.25253 0.95654 0.99705 0.97435 0.85800 0.79759 0.81127 0.77682 1.19200 1.20784 1.20756 1.19754 0.93407 0.82189 1.47272 0.87875 1.41870 1.09100 1.04581 1.64915 1.19640 0.88411 0.84357 0.84548 1.90543 1.13625 1.86898 1.54477 1.22506 0.94526 0.92995 1.02079 1.68807 1.30334 0.99867 1.16548 1.24420 1.03876 0.93155 0.92423 1.22786 0.98097 0.87491 0.90301 1.45827 1.11549 1.31553 1.47260 1.17875 0.86928 0.80630 0.80116 1.90895 1.13685 1.72016 1.62223 1.20005 0.94621 0.98141 1.02121 1.21328 0.91920 0.98633 0.96747 1.21059 1.01166 0.94120 0.96242 1.21331 0.91045 0.99543 1.00041 1.17593 0.90812 0.90036 0.97777 1.91568 1.79064 1.59801 1.79802 1.17690 0.78870 0.95565 0.97226 1.91650 1.28231 1.94917 1.93149 1.24329 0.97255 0.92166 1.00545 0.91977 0.77590 0.89177 0.92211 0.91092 0.88643 0.84935 0.76447 0.83783 0.83326 0.83065 0.88667 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -14.29 5.29 -10.96 -0.06 -14.34 16 10 C 0.45 10.53 7.85 -10.98 -0.09 10.44 16 11 O -0.57 -15.92 16.01 5.55 0.09 -15.83 16 12 C 0.01 0.19 5.30 -4.97 -0.03 0.16 16 13 N -0.43 -6.88 5.82 -246.09 -1.43 -8.31 16 14 C -0.01 -0.12 7.52 -7.54 -0.06 -0.18 16 15 C 0.12 1.34 4.59 -67.72 -0.31 1.03 16 16 N -0.71 -6.22 5.34 -54.53 -0.29 -6.51 16 17 C 0.56 6.29 7.77 -12.39 -0.10 6.20 16 18 O -0.51 -8.10 14.93 5.31 0.08 -8.02 16 19 C -0.14 -1.26 5.88 -104.92 -0.62 -1.87 16 20 C -0.07 -0.31 9.54 -39.19 -0.37 -0.69 16 21 C -0.11 -0.36 10.03 -39.65 -0.40 -0.75 16 22 C -0.10 -0.47 10.01 -39.45 -0.40 -0.86 16 23 C 0.06 0.47 7.30 -39.42 -0.29 0.18 16 24 F -0.12 -1.16 17.18 2.25 0.04 -1.12 16 25 C 0.13 1.31 7.29 -38.90 -0.28 1.02 16 26 F -0.10 -1.36 15.46 2.25 0.03 -1.32 16 27 C -0.01 -0.14 7.45 -7.54 -0.06 -0.20 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 30 H 0.09 1.34 8.08 -51.93 -0.42 0.93 16 31 H 0.06 0.86 7.30 -51.93 -0.38 0.49 16 32 H 0.07 0.88 7.42 -51.93 -0.39 0.49 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.13 1.76 7.45 -51.93 -0.39 1.37 16 35 H 0.40 2.08 6.78 -40.82 -0.28 1.80 16 36 H 0.14 0.25 6.40 -52.48 -0.34 -0.09 16 37 H 0.15 0.05 8.06 -52.49 -0.42 -0.38 16 38 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -36.30 356.76 -7.81 -44.11 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.12 Total: 7.08 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -3.23 Total: 6.51 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -1.06 Total: -52.85 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.07 Total: -2.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.30 -7.81 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267657117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.998 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds