Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15 19 19 C 1.47703 * 120.00118 * 180.02562 * 17 16 15 20 20 C 1.39674 * 120.15605 * 359.72858 * 19 17 16 21 21 C 1.37850 * 119.92731 * 179.69877 * 20 19 17 22 22 C 1.38450 * 120.23370 * 0.60111 * 21 20 19 23 23 C 1.38383 * 120.31788 * 359.66996 * 22 21 20 24 24 F 1.35100 * 119.96391 * 180.02562 * 23 22 21 25 25 C 1.38537 * 120.07201 * 0.03049 * 23 22 21 26 26 F 1.35098 * 120.12325 * 180.02562 * 25 23 22 27 27 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 28 28 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 29 29 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 31 31 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 32 32 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 33 33 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 34 34 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 35 35 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 36 36 H 1.08005 * 120.03536 * 359.97438 * 20 19 17 37 37 H 1.07998 * 119.88105 * 180.27703 * 21 20 19 38 38 H 1.07997 * 119.83581 * 179.70183 * 22 21 20 39 39 H 1.08994 * 113.48196 * 253.46980 * 27 13 12 40 40 H 1.09003 * 113.47819 * 23.94188 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 1.7254 -8.8242 -1.7276 17 6 2.4246 -9.7899 -2.3561 18 8 3.6252 -9.8789 -2.1869 19 6 1.7323 -10.7399 -3.2503 20 6 0.3522 -10.6441 -3.4426 21 6 -0.2882 -11.5294 -4.2831 22 6 0.4299 -12.5218 -4.9283 23 6 1.7967 -12.6293 -4.7406 24 9 2.4905 -13.6001 -5.3742 25 6 2.4544 -11.7427 -3.9036 26 9 3.7888 -11.8464 -3.7200 27 6 1.5115 -7.2624 0.2370 28 1 -0.4850 0.8401 -0.0004 29 1 0.3535 -2.3906 0.0002 30 1 0.6170 -4.9209 0.8886 31 1 0.6176 -4.9205 -0.8913 32 1 1.6687 -6.2094 -2.0777 33 1 3.4527 -6.1559 -1.7451 34 1 3.3646 -8.2559 -0.4659 35 1 0.7674 -8.7533 -1.8623 36 1 -0.2120 -9.8744 -2.9368 37 1 -1.3547 -11.4518 -4.4347 38 1 -0.0791 -13.2149 -5.5816 39 1 1.6845 -7.6690 1.2333 40 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267657117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = -111.972653 kcal Electronic energy + Delta-G solvation = -27744.141288 eV Core-core repulsion = 23195.455393 eV Total energy + Delta-G solvation = -4548.685894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.58312 -49.66634 -41.86112 -40.73562 -39.64486 -39.05032 -35.97268 -35.32850 -33.29604 -32.53705 -31.48144 -30.89140 -27.44555 -26.96629 -25.97326 -24.68817 -23.74779 -22.04721 -21.42176 -21.01006 -19.90772 -19.51963 -18.49046 -18.36754 -17.82823 -17.51946 -17.45402 -17.36833 -16.58971 -16.54609 -16.33839 -16.08490 -15.85781 -15.80673 -15.58899 -15.51941 -15.27121 -14.81621 -14.33058 -14.04110 -13.76258 -13.69111 -13.51775 -13.17872 -13.07420 -13.01364 -12.83289 -12.73029 -12.43956 -12.34918 -12.12962 -11.86090 -11.50541 -11.25048 -10.39585 -10.38349 -10.09280 -10.00128 -9.87750 -9.77107 -8.47014 -5.95055 -0.57564 -0.17260 1.35814 1.41226 1.54990 1.56562 1.76802 2.07081 2.29183 2.43401 2.66634 2.87295 3.19343 3.23828 3.29645 3.35745 3.51394 3.63775 3.72445 3.75787 4.07218 4.10092 4.26994 4.28724 4.39450 4.46683 4.55171 4.67724 4.70468 4.79801 4.83990 4.89412 5.00497 5.10298 5.28839 5.33995 5.41561 5.60988 5.87857 6.07733 6.36179 6.61962 7.03958 7.14340 7.57887 8.15528 8.70509 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.001812 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.203536 B =15446.730408 C =15737.878078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.073 0.927 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.624 6.624 12 C 0.026 3.974 13 N -0.477 5.477 14 C -0.012 4.012 15 C 0.130 3.870 16 N -0.687 5.687 17 C 0.555 3.445 18 O -0.572 6.572 19 C -0.161 4.161 20 C -0.051 4.051 21 C -0.087 4.087 22 C -0.084 4.084 23 C 0.038 3.962 24 F -0.139 7.139 25 C 0.085 3.915 26 F -0.136 7.136 27 C 0.006 3.994 28 H 0.278 0.722 29 H 0.398 0.602 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.422 0.578 36 H 0.183 0.817 37 H 0.197 0.803 38 H 0.183 0.817 39 H 0.104 0.896 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.052 -26.373 -9.132 30.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.091 0.909 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.105 4.105 13 N -0.200 5.200 14 C -0.142 4.142 15 C 0.023 3.977 16 N -0.340 5.340 17 C 0.343 3.657 18 O -0.452 6.452 19 C -0.165 4.165 20 C -0.069 4.069 21 C -0.105 4.105 22 C -0.103 4.103 23 C 0.018 3.982 24 F -0.118 7.118 25 C 0.064 3.936 26 F -0.114 7.114 27 C -0.123 4.123 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.262 0.738 36 H 0.200 0.800 37 H 0.214 0.786 38 H 0.200 0.800 39 H 0.122 0.878 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.929 -26.045 -8.557 29.513 hybrid contribution 0.143 0.741 -0.590 0.958 sum -10.786 -25.304 -9.147 28.988 Atomic orbital electron populations 1.69659 1.06596 1.29183 1.50484 1.25972 0.96588 1.02183 0.96401 0.84917 0.77905 0.77362 0.78432 1.20240 1.19444 1.19492 1.19643 0.92540 0.84221 1.49841 0.90856 1.41924 1.09308 1.04574 1.65457 1.20943 0.88272 0.86187 0.82035 1.90512 1.16306 1.87995 1.56151 1.22393 0.94016 0.89289 1.04838 1.68718 1.31993 1.01663 1.17651 1.24462 1.02630 0.94749 0.92401 1.22352 0.97927 0.86563 0.90811 1.45532 1.12385 1.30085 1.45998 1.18370 0.86405 0.80992 0.79949 1.90869 1.16424 1.73620 1.64269 1.19906 0.96290 0.97740 1.02605 1.21806 0.89826 0.99199 0.96066 1.21637 1.03071 0.91970 0.93813 1.21812 0.89188 0.99916 0.99390 1.17936 0.92175 0.89881 0.98193 1.91521 1.79764 1.60391 1.80134 1.18235 0.77933 0.97777 0.99645 1.91548 1.30787 1.95359 1.93738 1.24351 0.98851 0.88440 1.00612 0.91277 0.76808 0.86487 0.88912 0.88746 0.92627 0.87740 0.73774 0.80030 0.78606 0.79981 0.87780 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 2 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 3 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 10 C 0.44 20.84 7.85 87.66 0.69 21.53 16 11 O -0.62 -36.03 16.01 -3.07 -0.05 -36.08 16 12 C 0.03 0.82 5.30 85.56 0.45 1.28 16 13 N -0.48 -14.56 5.82 -932.48 -5.43 -19.99 16 14 C -0.01 -0.34 7.52 83.58 0.63 0.29 16 15 C 0.13 2.84 4.59 45.45 0.21 3.05 16 16 N -0.69 -10.64 5.34 -444.70 -2.37 -13.01 16 17 C 0.55 12.59 7.77 86.74 0.67 13.26 16 18 O -0.57 -19.60 14.93 -3.93 -0.06 -19.66 16 19 C -0.16 -2.65 5.88 -20.06 -0.12 -2.77 16 20 C -0.05 -0.25 9.54 22.52 0.21 -0.03 16 21 C -0.09 -0.09 10.03 22.23 0.22 0.13 16 22 C -0.08 -0.48 10.01 22.35 0.22 -0.25 16 23 C 0.04 0.60 7.30 22.38 0.16 0.77 16 24 F -0.14 -2.72 17.18 44.97 0.77 -1.94 16 25 C 0.09 1.83 7.29 22.71 0.17 2.00 16 26 F -0.14 -4.12 15.46 44.97 0.70 -3.42 16 27 C 0.01 0.11 7.45 83.58 0.62 0.74 16 28 H 0.28 13.74 8.31 -92.71 -0.77 12.96 16 29 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 30 H 0.12 3.05 8.08 -2.39 -0.02 3.03 16 31 H 0.09 2.31 7.30 -2.39 -0.02 2.29 16 32 H 0.09 2.10 7.42 -2.39 -0.02 2.09 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 2.95 7.45 -2.39 -0.02 2.93 16 35 H 0.42 2.45 6.78 -92.71 -0.63 1.82 16 36 H 0.18 -0.56 6.40 -2.91 -0.02 -0.58 16 37 H 0.20 -1.47 8.06 -2.91 -0.02 -1.50 16 38 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.11 1.15 7.90 -2.39 -0.02 1.13 16 Total: -1.00 -88.43 356.76 -0.55 -88.99 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.23 Total: 17.55 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.43 Total: 21.63 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -9.14 Total: -112.22 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -0.11 Total: -55.74 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 1.47 Total: -5.36 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -88.43 -0.55 -88.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267657117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.986 kcal (2) G-P(sol) polarization free energy of solvation -88.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds