Wall clock time and date at job start Tue Mar 31 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46502 * 114.17188 * 139.67018 * 15 14 13 17 17 C 1.34777 * 119.99942 * 111.15947 * 16 15 14 18 18 O 1.21588 * 119.99946 * 0.02562 * 17 16 15 19 19 C 1.47567 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.39731 * 120.13850 * 359.72290 * 19 17 16 21 21 C 1.37745 * 119.90548 * 179.74095 * 20 19 17 22 22 C 1.38758 * 120.18678 * 0.54113 * 21 20 19 23 23 F 1.35098 * 119.85617 * 179.75967 * 22 21 20 24 24 C 1.38502 * 120.28719 * 359.73708 * 22 21 20 25 25 C 1.38195 * 120.09252 * 359.97438 * 24 22 21 26 26 F 1.35096 * 120.09541 * 180.02562 * 25 24 22 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09000 * 114.34727 * 272.36554 * 15 14 13 35 35 H 0.96992 * 119.99938 * 291.16113 * 16 15 14 36 36 H 1.08005 * 120.05189 * 0.02562 * 20 19 17 37 37 H 1.07997 * 119.90859 * 180.27744 * 21 20 19 38 38 H 1.08004 * 119.95006 * 180.02562 * 24 22 21 39 39 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 40 40 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7167 -8.8212 -1.7334 17 6 2.4131 -9.7859 -2.3666 18 8 3.6146 -9.8754 -2.2030 19 6 1.7173 -10.7335 -3.2586 20 6 0.3358 -10.6369 -3.4442 21 6 -0.3080 -11.5207 -4.2820 22 6 0.4098 -12.5135 -4.9335 23 9 -0.2291 -13.3797 -5.7499 24 6 1.7786 -12.6200 -4.7507 25 6 2.4372 -11.7359 -3.9174 26 9 3.7724 -11.8395 -3.7395 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3603 -8.2583 -0.4775 35 1 0.7582 -8.7501 -1.8636 36 1 -0.2259 -9.8676 -2.9351 37 1 -1.3752 -11.4433 -4.4290 38 1 2.3320 -13.3946 -5.2608 39 1 1.6894 -7.6711 1.2299 40 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268478538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:11 Heat of formation + Delta-G solvation = -83.996980 kcal Electronic energy + Delta-G solvation = -27630.096941 eV Core-core repulsion = 23082.624162 eV Total energy + Delta-G solvation = -4547.472778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.65971 -49.37739 -40.88226 -39.79266 -38.43885 -37.69163 -34.44318 -33.85717 -31.86152 -31.28918 -31.16413 -29.67794 -25.98406 -25.79876 -24.62037 -23.88151 -23.15197 -21.15198 -20.44525 -19.28214 -18.85967 -18.14627 -17.94318 -17.64297 -16.61168 -16.57507 -16.22150 -16.09682 -15.86339 -15.61318 -15.31846 -15.15514 -14.94572 -14.61261 -14.55365 -14.23693 -13.88266 -13.61817 -13.29171 -12.99463 -12.87125 -12.71502 -12.50957 -12.30664 -12.15819 -11.65456 -11.54791 -11.26783 -11.07950 -10.70655 -10.39303 -10.33935 -10.21487 -9.80097 -9.50326 -9.45460 -9.23747 -8.89654 -8.23966 -7.96471 -6.42121 -3.82669 -0.06980 0.35518 2.18862 2.63907 3.03168 3.17818 3.18531 3.26415 3.32810 3.71088 3.85234 3.88417 3.93793 4.13285 4.16811 4.23037 4.35094 4.44217 4.73262 4.92754 4.98333 5.08342 5.12120 5.23049 5.27118 5.27301 5.29609 5.33428 5.53989 5.60859 5.62974 5.79025 6.00028 6.02216 6.16511 6.25330 6.45581 7.03282 7.12152 7.55218 7.82307 8.05814 8.61767 9.18447 9.54003 10.06532 10.75775 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022657 B = 0.001821 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.538627 B =15369.467178 C =15884.221426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.573 6.573 12 C 0.011 3.989 13 N -0.433 5.433 14 C -0.008 4.008 15 C 0.119 3.881 16 N -0.712 5.712 17 C 0.560 3.440 18 O -0.516 6.516 19 C -0.184 4.184 20 C -0.027 4.027 21 C -0.172 4.172 22 C 0.157 3.843 23 F -0.125 7.125 24 C -0.204 4.204 25 C 0.193 3.807 26 F -0.103 7.103 27 C -0.013 4.013 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.399 0.601 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -26.028 -8.456 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.456 6.456 12 C -0.121 4.121 13 N -0.156 5.156 14 C -0.139 4.139 15 C 0.014 3.986 16 N -0.364 5.364 17 C 0.346 3.654 18 O -0.392 6.392 19 C -0.188 4.188 20 C -0.046 4.046 21 C -0.191 4.191 22 C 0.137 3.863 23 F -0.103 7.103 24 C -0.223 4.223 25 C 0.172 3.828 26 F -0.081 7.081 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.235 0.765 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.113 0.887 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.768 -25.685 -7.892 27.290 hybrid contribution -1.515 0.639 -0.766 1.814 sum -6.283 -25.047 -8.658 27.235 Atomic orbital electron populations 1.69609 1.05918 1.28105 1.50899 1.25254 0.95651 0.99700 0.97416 0.85855 0.79270 0.80794 0.78376 1.20437 1.20936 1.19390 1.19702 0.93376 0.82205 1.47413 0.87935 1.41860 1.09099 1.04574 1.64898 1.19638 0.88411 0.84353 0.84566 1.90542 1.13623 1.86900 1.54506 1.22504 0.94517 0.93002 1.02085 1.68805 1.30502 0.99859 1.16391 1.24414 1.03845 0.93199 0.92405 1.22773 0.98033 0.87536 0.90274 1.45842 1.11444 1.31772 1.47314 1.17869 0.86951 0.80536 0.80003 1.90891 1.13645 1.72097 1.62556 1.20168 0.94711 0.99820 1.04105 1.21069 0.91922 0.96987 0.94599 1.21161 1.01882 0.96156 0.99858 1.17526 0.89677 0.88774 0.90292 1.91572 1.81613 1.67487 1.69677 1.21064 0.93935 1.03448 1.03900 1.17267 0.78244 0.93282 0.93966 1.91656 1.28621 1.94811 1.93026 1.24331 0.97286 0.92196 1.00529 0.91925 0.77586 0.89196 0.92220 0.91112 0.88664 0.84959 0.76548 0.83425 0.83119 0.82580 0.88699 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 9 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C 0.45 10.53 7.85 -10.98 -0.09 10.44 16 11 O -0.57 -15.92 16.01 5.54 0.09 -15.83 16 12 C 0.01 0.19 5.30 -4.98 -0.03 0.16 16 13 N -0.43 -6.88 5.82 -246.13 -1.43 -8.31 16 14 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16 15 C 0.12 1.34 4.60 -67.72 -0.31 1.03 16 16 N -0.71 -6.18 5.34 -54.57 -0.29 -6.47 16 17 C 0.56 6.15 7.76 -12.46 -0.10 6.05 16 18 O -0.52 -7.93 14.93 5.29 0.08 -7.85 16 19 C -0.18 -1.53 5.88 -104.91 -0.62 -2.15 16 20 C -0.03 -0.13 9.53 -39.20 -0.37 -0.51 16 21 C -0.17 -0.78 10.01 -39.57 -0.40 -1.17 16 22 C 0.16 0.95 7.30 -39.29 -0.29 0.66 16 23 F -0.13 -0.83 17.26 2.25 0.04 -0.79 16 24 C -0.20 -1.36 9.99 -39.50 -0.39 -1.76 16 25 C 0.19 1.74 7.28 -38.97 -0.28 1.46 16 26 F -0.10 -1.21 15.55 2.25 0.04 -1.17 16 27 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 30 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 31 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 32 H 0.07 0.88 7.42 -51.93 -0.39 0.49 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.13 1.74 7.45 -51.93 -0.39 1.36 16 35 H 0.40 2.08 6.78 -40.82 -0.28 1.80 16 36 H 0.15 0.28 6.40 -52.48 -0.34 -0.06 16 37 H 0.15 0.34 8.06 -52.49 -0.42 -0.09 16 38 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -35.46 356.86 -7.81 -43.27 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.12 Total: 7.90 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.23 Total: 5.85 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -1.06 Total: -52.85 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.07 Total: -1.96 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.46 -7.81 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268478538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.727 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds