Wall clock time and date at job start Tue Mar 31 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46502 * 114.17188 * 139.67018 * 15 14 13 17 17 C 1.34777 * 119.99942 * 111.15947 * 16 15 14 18 18 O 1.21588 * 119.99946 * 0.02562 * 17 16 15 19 19 C 1.47567 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.39731 * 120.13850 * 359.72290 * 19 17 16 21 21 C 1.37745 * 119.90548 * 179.74095 * 20 19 17 22 22 C 1.38758 * 120.18678 * 0.54113 * 21 20 19 23 23 F 1.35098 * 119.85617 * 179.75967 * 22 21 20 24 24 C 1.38502 * 120.28719 * 359.73708 * 22 21 20 25 25 C 1.38195 * 120.09252 * 359.97438 * 24 22 21 26 26 F 1.35096 * 120.09541 * 180.02562 * 25 24 22 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09000 * 114.34727 * 272.36554 * 15 14 13 35 35 H 0.96992 * 119.99938 * 291.16113 * 16 15 14 36 36 H 1.08005 * 120.05189 * 0.02562 * 20 19 17 37 37 H 1.07997 * 119.90859 * 180.27744 * 21 20 19 38 38 H 1.08004 * 119.95006 * 180.02562 * 24 22 21 39 39 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 40 40 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7167 -8.8212 -1.7334 17 6 2.4131 -9.7859 -2.3666 18 8 3.6146 -9.8754 -2.2030 19 6 1.7173 -10.7335 -3.2586 20 6 0.3358 -10.6369 -3.4442 21 6 -0.3080 -11.5207 -4.2820 22 6 0.4098 -12.5135 -4.9335 23 9 -0.2291 -13.3797 -5.7499 24 6 1.7786 -12.6200 -4.7507 25 6 2.4372 -11.7359 -3.9174 26 9 3.7724 -11.8395 -3.7395 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3603 -8.2583 -0.4775 35 1 0.7582 -8.7501 -1.8636 36 1 -0.2259 -9.8676 -2.9351 37 1 -1.3752 -11.4433 -4.4290 38 1 2.3320 -13.3946 -5.2608 39 1 1.6894 -7.6711 1.2299 40 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268478538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:10 Heat of formation + Delta-G solvation = -112.436556 kcal Electronic energy + Delta-G solvation = -27631.330173 eV Core-core repulsion = 23082.624162 eV Total energy + Delta-G solvation = -4548.706011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.14495 -50.10191 -41.83442 -40.70091 -39.62842 -38.99672 -35.96629 -35.29749 -33.29194 -32.46745 -31.75527 -30.84135 -27.40099 -26.95273 -25.74337 -24.67059 -23.97019 -21.97200 -21.39928 -20.99964 -19.90383 -19.44596 -18.81140 -18.34515 -17.83221 -17.45646 -17.20112 -16.77431 -16.63798 -16.53907 -16.49342 -16.36209 -16.05410 -15.70381 -15.58909 -15.51852 -15.03258 -14.80186 -14.29391 -14.17845 -13.77838 -13.68093 -13.52911 -13.50390 -13.08535 -12.99946 -12.76019 -12.57608 -12.43633 -12.33974 -12.12681 -11.84541 -11.49719 -11.24421 -10.38698 -10.33200 -10.19397 -10.00074 -9.88081 -9.76027 -8.46586 -5.94671 -0.62378 -0.10632 1.37483 1.41318 1.52976 1.53739 1.84726 2.07510 2.29558 2.41094 2.67859 2.87638 3.19242 3.19767 3.30446 3.42278 3.50567 3.52711 3.76954 3.78029 3.99650 4.09717 4.28531 4.29192 4.40797 4.54031 4.56149 4.60454 4.70745 4.77322 4.80825 4.87490 4.89904 4.93818 5.31336 5.34922 5.41612 5.56008 5.88418 6.08097 6.39483 6.62222 7.07713 7.14489 7.58179 8.15746 8.70717 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022657 B = 0.001821 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.538627 B =15369.467178 C =15884.221426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.333 4.333 8 H 0.074 0.926 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.026 3.974 13 N -0.477 5.477 14 C -0.012 4.012 15 C 0.131 3.869 16 N -0.690 5.690 17 C 0.557 3.443 18 O -0.572 6.572 19 C -0.197 4.197 20 C -0.011 4.011 21 C -0.156 4.156 22 C 0.155 3.845 23 F -0.127 7.127 24 C -0.203 4.203 25 C 0.163 3.837 26 F -0.130 7.130 27 C 0.005 3.995 28 H 0.278 0.722 29 H 0.398 0.602 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.421 0.579 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.165 0.835 39 H 0.104 0.896 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 -26.536 -8.759 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.463 4.463 8 H 0.092 0.908 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.106 4.106 13 N -0.200 5.200 14 C -0.143 4.143 15 C 0.025 3.975 16 N -0.343 5.343 17 C 0.346 3.654 18 O -0.451 6.451 19 C -0.201 4.201 20 C -0.029 4.029 21 C -0.174 4.174 22 C 0.135 3.865 23 F -0.106 7.106 24 C -0.223 4.223 25 C 0.142 3.858 26 F -0.108 7.108 27 C -0.124 4.124 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.260 0.740 36 H 0.203 0.797 37 H 0.202 0.798 38 H 0.182 0.818 39 H 0.122 0.878 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.555 -26.208 -8.200 28.763 hybrid contribution -0.400 0.727 -0.715 1.095 sum -8.955 -25.481 -8.914 28.442 Atomic orbital electron populations 1.69654 1.06618 1.29243 1.50420 1.25980 0.96586 1.02202 0.96393 0.84971 0.77866 0.77136 0.78632 1.19657 1.19336 1.20126 1.19612 0.92558 0.84214 1.49925 0.90804 1.41920 1.09303 1.04586 1.65456 1.20934 0.88280 0.86165 0.82052 1.90510 1.16265 1.87988 1.56148 1.22389 0.94026 0.89352 1.04784 1.68718 1.32113 1.01622 1.17533 1.24459 1.02623 0.94849 0.92324 1.22336 0.97864 0.86576 0.90717 1.45565 1.12290 1.30377 1.46107 1.18321 0.86440 0.80850 0.79829 1.90869 1.16199 1.73599 1.64462 1.20089 0.96157 0.99469 1.04385 1.21434 0.90162 0.97393 0.93923 1.21538 1.03310 0.94501 0.98077 1.17692 0.89382 0.89110 0.90291 1.91573 1.81494 1.67702 1.69800 1.21125 0.94594 1.03169 1.03391 1.17621 0.77499 0.94879 0.95759 1.91584 1.30596 1.95145 1.93480 1.24354 0.98868 0.88524 1.00640 0.91283 0.76832 0.86564 0.88993 0.88871 0.92546 0.87590 0.73953 0.79666 0.79792 0.81758 0.87803 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 8 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 9 N -0.57 -29.18 5.29 -306.98 -1.62 -30.80 16 10 C 0.44 20.84 7.85 87.66 0.69 21.53 16 11 O -0.62 -35.88 16.01 -3.08 -0.05 -35.93 16 12 C 0.03 0.82 5.30 85.56 0.45 1.27 16 13 N -0.48 -14.49 5.82 -932.63 -5.43 -19.92 16 14 C -0.01 -0.34 7.52 83.57 0.63 0.29 16 15 C 0.13 2.82 4.60 45.44 0.21 3.03 16 16 N -0.69 -10.40 5.34 -444.83 -2.37 -12.77 16 17 C 0.56 11.99 7.76 86.70 0.67 12.66 16 18 O -0.57 -18.56 14.93 -3.99 -0.06 -18.62 16 19 C -0.20 -3.02 5.88 -20.05 -0.12 -3.14 16 20 C -0.01 -0.06 9.53 22.51 0.21 0.15 16 21 C -0.16 -0.76 10.01 22.28 0.22 -0.53 16 22 C 0.16 1.49 7.30 22.46 0.16 1.65 16 23 F -0.13 -1.38 17.26 44.97 0.78 -0.60 16 24 C -0.20 -2.58 9.99 22.32 0.22 -2.36 16 25 C 0.16 2.98 7.28 22.66 0.17 3.14 16 26 F -0.13 -3.31 15.55 44.97 0.70 -2.61 16 27 C 0.00 0.09 7.45 83.57 0.62 0.71 16 28 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.40 18.73 7.90 -92.71 -0.73 17.99 16 30 H 0.12 3.05 8.08 -2.39 -0.02 3.03 16 31 H 0.09 2.31 7.30 -2.39 -0.02 2.29 16 32 H 0.09 2.07 7.42 -2.39 -0.02 2.06 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.11 2.91 7.45 -2.39 -0.02 2.89 16 35 H 0.42 2.44 6.78 -92.71 -0.63 1.81 16 36 H 0.19 -0.41 6.40 -2.91 -0.02 -0.43 16 37 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.11 1.16 7.90 -2.39 -0.02 1.14 16 Total: -1.00 -83.28 356.86 -0.55 -83.82 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.23 Total: 20.82 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 5.43 Total: 20.01 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -9.14 Total: -112.05 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.11 Total: -54.55 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 1.48 Total: -3.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -83.28 -0.55 -83.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268478538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.613 kcal (2) G-P(sol) polarization free energy of solvation -83.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds