Wall clock time and date at job start Tue Mar 31 2020 22:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48499 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47096 * 300.00148 * 3 2 1 6 6 H 1.48500 * 109.47159 * 60.00198 * 3 2 1 7 7 C 1.38949 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.37104 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99947 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00090 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99788 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.47967 * 111.00177 * 169.99819 * 13 12 10 15 15 C 1.53934 * 86.18229 * 222.42116 * 14 13 12 16 16 N 1.46499 * 113.73431 * 269.25860 * 15 14 13 17 17 C 1.34779 * 119.99839 * 203.10356 * 16 15 14 18 18 O 1.21581 * 120.00164 * 359.97438 * 17 16 15 19 19 C 1.47547 * 119.99846 * 179.97438 * 17 16 15 20 20 C 1.39898 * 120.18874 * 89.71764 * 19 17 16 21 21 F 1.35099 * 120.09781 * 0.02562 * 20 19 17 22 22 C 1.38227 * 119.80426 * 179.78815 * 20 19 17 23 23 C 1.38300 * 120.18735 * 0.49200 * 22 20 19 24 24 C 1.38298 * 120.38657 * 359.74005 * 23 22 20 25 25 C 1.38218 * 120.19172 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.09851 * 179.97438 * 25 24 23 27 27 C 1.48193 * 111.06841 * 70.57068 * 13 12 10 28 28 H 0.97005 * 119.99760 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99576 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47022 * 60.00096 * 12 10 9 31 31 H 1.08996 * 109.47553 * 300.00169 * 12 10 9 32 32 H 1.09001 * 113.75575 * 108.09971 * 14 13 12 33 33 H 1.08993 * 113.75515 * 336.74204 * 14 13 12 34 34 H 1.09002 * 113.73279 * 138.08098 * 15 14 13 35 35 H 0.96999 * 120.00392 * 23.09543 * 16 15 14 36 36 H 1.08000 * 119.90486 * 180.25613 * 22 20 19 37 37 H 1.08001 * 119.79995 * 179.76028 * 23 22 20 38 38 H 1.08005 * 119.90533 * 179.97438 * 24 23 22 39 39 H 1.09000 * 113.75997 * 23.23547 * 27 13 12 40 40 H 1.09002 * 113.81982 * 251.81037 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2437 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0050 14 6 1.5090 -7.2668 0.2343 15 6 2.6862 -7.6061 1.1663 16 7 3.7899 -8.2966 0.4946 17 6 4.6456 -9.0539 1.2094 18 8 4.5017 -9.1635 2.4117 19 6 5.7568 -9.7499 0.5329 20 6 6.9939 -9.1153 0.3778 21 9 7.1760 -7.8618 0.8478 22 6 8.0309 -9.7763 -0.2534 23 6 7.8449 -11.0575 -0.7400 24 6 6.6238 -11.6904 -0.5953 25 6 5.5776 -11.0460 0.0376 26 9 4.3854 -11.6658 0.1774 27 6 2.8950 -6.0867 1.2985 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6167 -4.9201 -0.8930 31 1 0.6174 -4.9213 0.8869 32 1 1.4497 -7.9038 -0.6482 33 1 0.5549 -7.1645 0.7513 34 1 2.3849 -8.0900 2.0953 35 1 3.9049 -8.2090 -0.4646 36 1 8.9878 -9.2895 -0.3703 37 1 8.6583 -11.5667 -1.2355 38 1 6.4871 -12.6908 -0.9786 39 1 2.3472 -5.6386 2.1275 40 1 3.9412 -5.7826 1.2647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268479122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:59 Heat of formation + Delta-G solvation = -87.962397 kcal Electronic energy + Delta-G solvation = -28414.227762 eV Core-core repulsion = 23866.583031 eV Total energy + Delta-G solvation = -4547.644732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.48157 -49.36632 -40.63432 -39.53570 -38.46718 -37.60171 -34.14938 -33.76726 -31.85036 -31.24571 -30.87242 -29.58922 -26.04822 -25.75339 -24.66630 -23.40849 -23.32448 -21.28027 -19.92728 -19.20271 -18.74418 -18.04898 -17.81527 -17.73537 -16.71308 -16.19684 -16.09970 -16.05777 -15.78129 -15.69358 -15.31990 -15.02080 -14.82199 -14.67152 -14.38786 -14.20168 -13.72489 -13.34716 -13.23699 -13.09133 -12.59216 -12.50413 -12.39311 -12.31931 -12.00140 -11.57436 -11.50470 -11.21776 -11.07006 -10.79029 -10.34459 -10.28804 -10.22009 -9.57256 -9.51888 -9.28287 -9.20554 -8.68941 -8.23931 -7.96549 -6.42097 -3.82787 0.27447 0.45481 2.19809 2.68973 2.89105 3.16174 3.26751 3.29607 3.34200 3.86930 3.88065 3.97175 4.10057 4.19651 4.29825 4.31147 4.49161 4.57852 4.87452 4.99152 5.12639 5.22028 5.23375 5.35190 5.37532 5.45759 5.47541 5.60282 5.60651 5.66373 5.70739 5.84572 6.12465 6.16272 6.24643 6.41343 6.58564 7.11419 7.26496 7.55211 7.90613 8.05675 8.61000 9.17893 9.53822 10.05501 10.75769 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002286 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.993106 B =12244.978139 C =13160.783442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.578 6.578 12 C 0.009 3.991 13 N -0.454 5.454 14 C -0.007 4.007 15 C 0.110 3.890 16 N -0.686 5.686 17 C 0.569 3.431 18 O -0.521 6.521 19 C -0.199 4.199 20 C 0.168 3.832 21 F -0.116 7.116 22 C -0.165 4.165 23 C -0.045 4.045 24 C -0.167 4.167 25 C 0.163 3.837 26 F -0.121 7.121 27 C 0.012 3.988 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.077 0.923 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.331 -24.683 -2.520 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.462 6.462 12 C -0.123 4.123 13 N -0.177 5.177 14 C -0.137 4.137 15 C 0.005 3.995 16 N -0.336 5.336 17 C 0.353 3.647 18 O -0.396 6.396 19 C -0.204 4.204 20 C 0.148 3.852 21 F -0.094 7.094 22 C -0.184 4.184 23 C -0.063 4.063 24 C -0.186 4.186 25 C 0.143 3.857 26 F -0.100 7.100 27 C -0.118 4.118 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.245 0.755 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.095 0.905 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.219 -24.429 -2.229 26.574 hybrid contribution -1.029 1.180 0.302 1.594 sum 9.190 -23.249 -1.927 25.074 Atomic orbital electron populations 1.69622 1.05933 1.28038 1.50777 1.25264 0.95644 0.99727 0.97374 0.85802 0.79723 0.81138 0.77705 1.19221 1.20741 1.20754 1.19744 0.93368 0.82198 1.47390 0.87907 1.41879 1.09172 1.04615 1.64522 1.19682 0.88382 0.84512 0.84572 1.90531 1.13616 1.86990 1.55040 1.22461 0.95165 0.92633 1.02003 1.68482 1.18180 0.99910 1.31091 1.24393 0.96201 0.93665 0.99399 1.22484 0.86745 0.93583 0.96737 1.45518 1.28500 1.47760 1.11858 1.17720 0.81391 0.78776 0.86825 1.90834 1.72650 1.62457 1.13673 1.19937 0.96071 0.96163 1.08235 1.17365 0.92389 0.80321 0.95135 1.91635 1.95392 1.36765 1.85565 1.21236 0.99370 0.96321 1.01484 1.21015 0.96655 0.93201 0.95439 1.21175 0.92496 1.02136 1.02793 1.17293 0.82026 0.89248 0.97129 1.91579 1.43287 1.81688 1.93409 1.24309 1.02777 0.93114 0.91617 0.91936 0.77511 0.89076 0.92605 0.88875 0.89851 0.87638 0.75483 0.83146 0.83306 0.83293 0.90461 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 10 C 0.44 10.53 7.59 -10.99 -0.08 10.45 16 11 O -0.58 -15.81 15.13 5.55 0.08 -15.72 16 12 C 0.01 0.16 5.31 -4.98 -0.03 0.14 16 13 N -0.45 -7.34 5.95 -239.66 -1.43 -8.77 16 14 C -0.01 -0.08 7.72 -2.76 -0.02 -0.10 16 15 C 0.11 1.45 4.39 -69.62 -0.31 1.15 16 16 N -0.69 -8.78 5.37 -55.98 -0.30 -9.08 16 17 C 0.57 8.06 6.54 -12.46 -0.08 7.98 16 18 O -0.52 -9.15 16.73 5.29 0.09 -9.06 16 19 C -0.20 -2.27 5.64 -104.86 -0.59 -2.86 16 20 C 0.17 1.77 7.29 -38.96 -0.28 1.48 16 21 F -0.12 -1.51 16.83 2.25 0.04 -1.47 16 22 C -0.17 -1.13 10.01 -39.56 -0.40 -1.52 16 23 C -0.04 -0.22 10.03 -39.54 -0.40 -0.61 16 24 C -0.17 -1.01 10.01 -39.57 -0.40 -1.40 16 25 C 0.16 1.53 7.29 -38.97 -0.28 1.24 16 26 F -0.12 -1.27 16.83 2.25 0.04 -1.23 16 27 C 0.01 0.19 6.58 -2.63 -0.02 0.17 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 0.87 7.70 -51.93 -0.40 0.47 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 34 H 0.11 1.38 7.51 -51.93 -0.39 0.99 16 35 H 0.41 4.64 8.72 -40.82 -0.36 4.28 16 36 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 38 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.08 1.23 7.79 -51.93 -0.40 0.83 16 40 H 0.10 1.87 8.10 -51.93 -0.42 1.45 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -35.06 361.05 -7.84 -42.90 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.32 Total: 11.14 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -3.12 Total: 8.08 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -1.06 Total: -56.30 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.17 Total: -24.78 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.06 -7.84 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268479122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.065 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds