Wall clock time and date at job start Tue Mar 31 2020 22:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48499 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47096 * 300.00148 * 3 2 1 6 6 H 1.48500 * 109.47159 * 60.00198 * 3 2 1 7 7 C 1.38949 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.37104 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99947 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00090 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99788 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.47967 * 111.00177 * 169.99819 * 13 12 10 15 15 C 1.53934 * 86.18229 * 222.42116 * 14 13 12 16 16 N 1.46499 * 113.73431 * 269.25860 * 15 14 13 17 17 C 1.34779 * 119.99839 * 203.10356 * 16 15 14 18 18 O 1.21581 * 120.00164 * 359.97438 * 17 16 15 19 19 C 1.47547 * 119.99846 * 179.97438 * 17 16 15 20 20 C 1.39898 * 120.18874 * 89.71764 * 19 17 16 21 21 F 1.35099 * 120.09781 * 0.02562 * 20 19 17 22 22 C 1.38227 * 119.80426 * 179.78815 * 20 19 17 23 23 C 1.38300 * 120.18735 * 0.49200 * 22 20 19 24 24 C 1.38298 * 120.38657 * 359.74005 * 23 22 20 25 25 C 1.38218 * 120.19172 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.09851 * 179.97438 * 25 24 23 27 27 C 1.48193 * 111.06841 * 70.57068 * 13 12 10 28 28 H 0.97005 * 119.99760 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99576 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47022 * 60.00096 * 12 10 9 31 31 H 1.08996 * 109.47553 * 300.00169 * 12 10 9 32 32 H 1.09001 * 113.75575 * 108.09971 * 14 13 12 33 33 H 1.08993 * 113.75515 * 336.74204 * 14 13 12 34 34 H 1.09002 * 113.73279 * 138.08098 * 15 14 13 35 35 H 0.96999 * 120.00392 * 23.09543 * 16 15 14 36 36 H 1.08000 * 119.90486 * 180.25613 * 22 20 19 37 37 H 1.08001 * 119.79995 * 179.76028 * 23 22 20 38 38 H 1.08005 * 119.90533 * 179.97438 * 24 23 22 39 39 H 1.09000 * 113.75997 * 23.23547 * 27 13 12 40 40 H 1.09002 * 113.81982 * 251.81037 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2437 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0050 14 6 1.5090 -7.2668 0.2343 15 6 2.6862 -7.6061 1.1663 16 7 3.7899 -8.2966 0.4946 17 6 4.6456 -9.0539 1.2094 18 8 4.5017 -9.1635 2.4117 19 6 5.7568 -9.7499 0.5329 20 6 6.9939 -9.1153 0.3778 21 9 7.1760 -7.8618 0.8478 22 6 8.0309 -9.7763 -0.2534 23 6 7.8449 -11.0575 -0.7400 24 6 6.6238 -11.6904 -0.5953 25 6 5.5776 -11.0460 0.0376 26 9 4.3854 -11.6658 0.1774 27 6 2.8950 -6.0867 1.2985 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3906 -0.0016 30 1 0.6167 -4.9201 -0.8930 31 1 0.6174 -4.9213 0.8869 32 1 1.4497 -7.9038 -0.6482 33 1 0.5549 -7.1645 0.7513 34 1 2.3849 -8.0900 2.0953 35 1 3.9049 -8.2090 -0.4646 36 1 8.9878 -9.2895 -0.3703 37 1 8.6583 -11.5667 -1.2355 38 1 6.4871 -12.6908 -0.9786 39 1 2.3472 -5.6386 2.1275 40 1 3.9412 -5.7826 1.2647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268479122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:59 Heat of formation + Delta-G solvation = -116.259118 kcal Electronic energy + Delta-G solvation = -28415.454800 eV Core-core repulsion = 23866.583031 eV Total energy + Delta-G solvation = -4548.871769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.23097 -50.19356 -41.79268 -40.63352 -39.61793 -39.07212 -36.00236 -35.14811 -33.32651 -32.59165 -31.45850 -30.91896 -27.47002 -27.16053 -25.82626 -24.71789 -23.95717 -22.22017 -21.32861 -20.80093 -19.92900 -19.53347 -18.82914 -18.47131 -17.86844 -17.69770 -17.10360 -16.80955 -16.79285 -16.57552 -16.53020 -16.50458 -16.16439 -15.73968 -15.59538 -15.44078 -15.27935 -14.91537 -14.51824 -13.88935 -13.81487 -13.64853 -13.47760 -13.12943 -13.04715 -13.02433 -12.94412 -12.73308 -12.49623 -12.39600 -12.15990 -11.99407 -11.53380 -11.37702 -10.37111 -10.35419 -10.23571 -10.03837 -9.89994 -9.74480 -8.49445 -5.98027 -0.36047 -0.14077 1.12809 1.33988 1.39184 1.53379 1.81669 2.02726 2.24402 2.26586 2.62048 2.75922 3.15621 3.19233 3.25122 3.29893 3.47486 3.70603 3.73343 3.74045 4.11334 4.14974 4.25486 4.38819 4.43709 4.49484 4.55455 4.60466 4.60973 4.69479 4.79121 4.88463 4.97411 5.11039 5.26339 5.31123 5.38571 5.62097 5.80642 6.02113 6.21049 6.57709 6.85127 7.10501 7.53515 8.09827 8.68207 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002286 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.993106 B =12244.978139 C =13160.783442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.075 0.925 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.621 6.621 12 C 0.022 3.978 13 N -0.474 5.474 14 C 0.013 3.987 15 C 0.117 3.883 16 N -0.681 5.681 17 C 0.565 3.435 18 O -0.566 6.566 19 C -0.224 4.224 20 C 0.135 3.865 21 F -0.143 7.143 22 C -0.155 4.155 23 C -0.024 4.024 24 C -0.149 4.149 25 C 0.146 3.854 26 F -0.133 7.133 27 C 0.004 3.996 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.416 0.584 36 H 0.174 0.826 37 H 0.198 0.802 38 H 0.183 0.817 39 H 0.077 0.923 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 -26.686 -4.134 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.093 0.907 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.110 4.110 13 N -0.198 5.198 14 C -0.115 4.115 15 C 0.011 3.989 16 N -0.330 5.330 17 C 0.351 3.649 18 O -0.445 6.445 19 C -0.229 4.229 20 C 0.115 3.885 21 F -0.121 7.121 22 C -0.173 4.173 23 C -0.041 4.041 24 C -0.168 4.168 25 C 0.126 3.874 26 F -0.111 7.111 27 C -0.126 4.126 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.253 0.747 36 H 0.191 0.809 37 H 0.215 0.785 38 H 0.200 0.800 39 H 0.095 0.905 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.390 -26.445 -3.875 28.676 hybrid contribution -1.022 1.715 0.764 2.138 sum 9.369 -24.730 -3.111 26.627 Atomic orbital electron populations 1.69673 1.06743 1.29244 1.50385 1.26026 0.96575 1.02349 0.96306 0.84888 0.77931 0.77177 0.78441 1.20037 1.19388 1.19520 1.19652 0.92547 0.84095 1.49892 0.90673 1.41944 1.09320 1.04689 1.65224 1.20817 0.88270 0.86081 0.82231 1.90507 1.15896 1.87939 1.56320 1.22383 0.94837 0.89421 1.04334 1.68466 1.19095 1.01240 1.30979 1.24478 0.96179 0.90800 1.00089 1.22411 0.87539 0.91339 0.97624 1.45546 1.28252 1.47061 1.12147 1.18257 0.81796 0.78385 0.86448 1.90786 1.73967 1.64184 1.15587 1.19863 0.95534 0.97363 1.10174 1.17804 0.93459 0.79975 0.97303 1.91562 1.95569 1.38625 1.86360 1.21622 0.99009 0.96971 0.99731 1.21598 0.97257 0.91915 0.93367 1.21637 0.91508 1.03105 1.00514 1.17581 0.82705 0.88757 0.98334 1.91545 1.44207 1.81702 1.93681 1.24236 1.00631 0.95691 0.92028 0.91259 0.76927 0.86622 0.90000 0.86487 0.87080 0.87436 0.74674 0.80866 0.78504 0.79956 0.90499 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -29.95 5.29 -306.98 -1.62 -31.57 16 10 C 0.44 21.30 7.59 87.66 0.67 21.97 16 11 O -0.62 -35.49 15.13 -3.07 -0.05 -35.53 16 12 C 0.02 0.74 5.31 85.56 0.45 1.19 16 13 N -0.47 -15.12 5.95 -912.13 -5.42 -20.54 16 14 C 0.01 0.28 7.72 86.41 0.67 0.95 16 15 C 0.12 3.11 4.39 46.55 0.20 3.31 16 16 N -0.68 -18.09 5.37 -449.28 -2.41 -20.50 16 17 C 0.57 16.99 6.54 86.70 0.57 17.55 16 18 O -0.57 -21.26 16.73 -3.97 -0.07 -21.33 16 19 C -0.22 -5.29 5.64 -20.02 -0.11 -5.40 16 20 C 0.13 2.90 7.29 22.67 0.17 3.06 16 21 F -0.14 -4.06 16.83 44.97 0.76 -3.30 16 22 C -0.15 -1.77 10.01 22.28 0.22 -1.55 16 23 C -0.02 -0.13 10.03 22.30 0.22 0.10 16 24 C -0.15 -1.28 10.01 22.28 0.22 -1.06 16 25 C 0.15 2.60 7.29 22.67 0.17 2.77 16 26 F -0.13 -2.72 16.83 44.97 0.76 -1.97 16 27 C 0.00 0.15 6.58 86.36 0.57 0.72 16 28 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 29 H 0.40 19.49 7.90 -92.71 -0.73 18.75 16 30 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.08 2.39 7.70 -2.39 -0.02 2.37 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 1.84 7.79 -2.39 -0.02 1.83 16 34 H 0.11 2.85 7.51 -2.39 -0.02 2.84 16 35 H 0.42 9.70 8.72 -92.71 -0.81 8.89 16 36 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.20 -0.74 8.06 -2.91 -0.02 -0.76 16 38 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.08 2.56 7.79 -2.39 -0.02 2.54 16 40 H 0.06 2.42 8.10 -2.39 -0.02 2.40 16 Total: -1.00 -82.16 361.05 -0.87 -83.02 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.41 Total: 30.80 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 5.29 Total: 24.93 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -9.18 Total: -122.38 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.11 Total: -56.86 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.51 Total: -5.27 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -82.16 -0.87 -83.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268479122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.236 kcal (2) G-P(sol) polarization free energy of solvation -82.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds