Wall clock time and date at job start Tue Mar 31 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46764 * 270.00208 * 3 2 1 5 5 H 1.48497 * 109.47288 * 30.00015 * 3 2 1 6 6 H 1.48497 * 109.47371 * 150.00602 * 3 2 1 7 7 C 1.38952 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99969 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00302 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00038 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00507 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99779 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47207 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99915 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46729 * 185.26546 * 14 13 12 16 16 H 1.09000 * 109.87583 * 302.97729 * 15 14 13 17 17 C 1.54326 * 109.88361 * 64.00068 * 15 14 13 18 18 C 1.55156 * 102.94140 * 141.60757 * 17 15 14 19 19 C 1.54909 * 101.58582 * 324.50088 * 18 17 15 20 20 N 1.47024 * 109.88256 * 181.80739 * 15 14 13 21 21 C 1.34780 * 125.64677 * 61.59171 * 20 15 14 22 22 O 1.21603 * 120.00021 * 5.11907 * 21 20 15 23 23 C 1.47449 * 120.00233 * 185.11480 * 21 20 15 24 24 C 1.37981 * 124.15763 * 179.72868 * 23 21 20 25 25 S 1.72102 * 104.03056 * 179.90373 * 24 23 21 26 26 N 1.56396 * 96.15530 * 0.32406 * 25 24 23 27 27 N 1.27417 * 109.88105 * 359.80468 * 26 25 24 28 28 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99824 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47256 * 60.00190 * 12 10 9 31 31 H 1.08996 * 109.47345 * 300.00142 * 12 10 9 32 32 H 1.00898 * 111.00006 * 303.95699 * 13 12 10 33 33 H 1.08997 * 109.47236 * 65.26862 * 14 13 12 34 34 H 1.08998 * 109.47540 * 305.26392 * 14 13 12 35 35 H 1.08993 * 110.71659 * 259.97109 * 17 15 14 36 36 H 1.08997 * 110.71958 * 23.24836 * 17 15 14 37 37 H 1.09006 * 111.00409 * 82.57391 * 18 17 15 38 38 H 1.09001 * 111.00486 * 206.38287 * 18 17 15 39 39 H 1.08997 * 110.37058 * 155.85213 * 19 18 17 40 40 H 1.09009 * 110.36401 * 278.06535 * 19 18 17 41 41 H 1.07999 * 127.97795 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1984 -5.9795 -0.0030 14 6 1.4981 -7.2708 -0.0031 15 6 2.5178 -8.4040 0.1272 16 1 3.2467 -8.3413 -0.6808 17 6 3.2356 -8.3100 1.4902 18 6 3.3795 -9.7966 1.9104 19 6 2.0650 -10.4041 1.3600 20 7 1.8302 -9.7028 0.0847 21 6 1.1045 -10.1739 -0.9487 22 8 1.0528 -9.5487 -1.9904 23 6 0.3732 -11.4474 -0.8162 24 6 -0.3984 -12.0052 -1.8149 25 16 -0.9967 -13.4599 -1.1166 26 7 -0.3009 -13.2778 0.2722 27 7 0.3716 -12.1956 0.2813 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6161 -4.9205 -0.8903 31 1 0.6182 -4.9209 0.8896 32 1 2.8321 -5.9121 -0.7852 33 1 0.9458 -7.3846 -0.9359 34 1 0.8043 -7.3081 0.8368 35 1 4.2146 -7.8442 1.3790 36 1 2.6265 -7.7631 2.2099 37 1 4.2490 -10.2538 1.4379 38 1 3.4310 -9.8929 2.9949 39 1 2.1841 -11.4739 1.1884 40 1 1.2433 -10.2208 2.0524 41 1 -0.5824 -11.6191 -2.8066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270244534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:33 Heat of formation + Delta-G solvation = 15.801098 kcal Electronic energy + Delta-G solvation = -26242.073248 eV Core-core repulsion = 22285.061177 eV Total energy + Delta-G solvation = -3957.012071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57905 -40.04758 -38.27069 -37.72430 -35.23462 -33.80424 -32.73948 -31.72209 -31.21855 -30.22317 -27.57755 -26.72910 -25.23240 -24.40460 -22.99823 -22.24862 -21.14063 -20.53100 -19.33206 -18.66551 -17.83570 -16.98725 -16.72164 -16.52770 -16.16038 -15.75008 -15.41641 -15.21308 -14.56467 -14.44190 -14.29816 -13.84143 -13.69552 -13.49721 -13.34026 -13.11288 -12.85372 -12.55595 -12.33175 -12.21888 -11.69780 -11.56606 -11.47542 -11.38567 -11.06037 -10.86883 -10.81444 -10.64975 -10.54327 -10.46077 -10.37489 -10.36984 -10.19429 -9.48358 -8.94903 -8.41246 -8.02366 -7.93054 -6.39145 -3.79879 -0.41221 0.43837 1.01856 1.05833 2.55647 2.77822 3.19757 3.28114 3.34198 3.36327 3.94201 4.10385 4.18620 4.29238 4.37624 4.51278 4.63133 4.81317 4.86686 5.03452 5.16568 5.23898 5.27138 5.36784 5.56888 5.65461 5.70029 5.78687 5.85102 5.89486 5.95534 6.02389 6.19342 6.23631 6.30823 6.98565 7.13725 7.22846 7.57641 7.66085 7.74142 8.09016 8.64086 9.20437 9.57265 10.08732 10.78699 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.001964 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.790219 B =14250.407667 C =15000.835653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.049 3.951 15 C 0.142 3.858 16 H 0.081 0.919 17 C -0.111 4.111 18 C -0.139 4.139 19 C 0.103 3.897 20 N -0.595 5.595 21 C 0.615 3.385 22 O -0.521 6.521 23 C -0.018 4.018 24 C -0.235 4.235 25 S 0.462 5.538 26 N -0.293 5.293 27 N -0.207 5.207 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.350 0.650 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -29.201 -0.539 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.295 5.295 14 C -0.082 4.082 15 C 0.039 3.961 16 H 0.099 0.901 17 C -0.149 4.149 18 C -0.177 4.177 19 C -0.020 4.020 20 N -0.327 5.327 21 C 0.398 3.602 22 O -0.396 6.396 23 C -0.165 4.165 24 C -0.393 4.393 25 S 0.598 5.402 26 N -0.273 5.273 27 N -0.078 5.078 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.075 -30.173 0.690 30.337 hybrid contribution -0.259 2.135 -1.660 2.717 sum -3.334 -28.038 -0.970 28.253 Atomic orbital electron populations 1.69612 1.05940 1.28122 1.50706 1.25269 0.95643 0.99733 0.97396 0.85851 0.79235 0.80803 0.78353 1.20444 1.20952 1.19400 1.19705 0.93369 0.82228 1.47488 0.87906 1.41861 1.09210 1.04606 1.64438 1.19785 0.88369 0.84682 0.84373 1.90517 1.13723 1.87077 1.55367 1.21652 0.94322 0.90835 1.01228 1.59994 1.18851 0.99496 1.51185 1.22250 0.95722 0.89048 1.01143 1.21605 0.93722 0.81064 0.99693 0.90077 1.22585 1.01885 0.95592 0.94876 1.22890 0.96894 0.96294 1.01639 1.22548 0.97626 0.97657 0.84137 1.48326 1.49549 1.19138 1.15718 1.16256 0.78665 0.82245 0.83045 1.90872 1.63165 1.58223 1.27360 1.22640 1.03668 0.99975 0.90194 1.28910 1.01704 1.01643 1.07003 1.81579 1.38976 1.15690 1.03942 1.78678 1.14166 1.15706 1.18739 1.71706 1.14080 0.99083 1.22900 0.91902 0.77466 0.93858 0.89660 0.83073 0.94204 0.91002 0.89243 0.89695 0.90760 0.89576 0.89118 0.90856 0.77370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 10 C 0.44 10.65 7.82 -10.99 -0.09 10.57 16 11 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 12 C 0.05 0.96 6.16 -4.97 -0.03 0.93 16 13 N -0.66 -11.02 5.82 -115.05 -0.67 -11.69 16 14 C 0.05 0.68 5.04 -3.82 -0.02 0.66 16 15 C 0.14 1.72 3.09 -66.95 -0.21 1.51 16 16 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.11 -1.16 6.21 -24.90 -0.15 -1.31 16 18 C -0.14 -1.13 7.08 -24.58 -0.17 -1.30 16 19 C 0.10 0.95 5.89 -2.53 -0.01 0.93 16 20 N -0.59 -6.79 3.07 -164.26 -0.50 -7.29 16 21 C 0.61 7.67 7.58 -12.51 -0.09 7.57 16 22 O -0.52 -7.89 15.99 5.28 0.08 -7.80 16 23 C -0.02 -0.18 6.75 -83.78 -0.57 -0.74 16 24 C -0.24 -1.66 11.21 30.64 0.34 -1.32 16 25 S 0.46 2.39 23.38 -107.50 -2.51 -0.13 16 26 N -0.29 -2.58 12.49 60.35 0.75 -1.82 16 27 N -0.21 -2.08 8.66 32.74 0.28 -1.80 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.35 6.09 8.49 -39.29 -0.33 5.76 16 33 H 0.04 0.61 6.96 -51.93 -0.36 0.25 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.56 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.82 6.42 -51.93 -0.33 0.49 16 40 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -33.92 362.59 -7.68 -41.61 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.07 Total: 12.50 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.24 Total: 9.39 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.53 Total: -61.42 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.51 Total: -0.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.92 -7.68 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270244534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.409 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds