Wall clock time and date at job start Tue Mar 31 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46764 * 270.00208 * 3 2 1 5 5 H 1.48497 * 109.47288 * 30.00015 * 3 2 1 6 6 H 1.48497 * 109.47371 * 150.00602 * 3 2 1 7 7 C 1.38952 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99969 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00302 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00038 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00507 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99779 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47207 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99915 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46729 * 185.26546 * 14 13 12 16 16 H 1.09000 * 109.87583 * 302.97729 * 15 14 13 17 17 C 1.54326 * 109.88361 * 64.00068 * 15 14 13 18 18 C 1.55156 * 102.94140 * 141.60757 * 17 15 14 19 19 C 1.54909 * 101.58582 * 324.50088 * 18 17 15 20 20 N 1.47024 * 109.88256 * 181.80739 * 15 14 13 21 21 C 1.34780 * 125.64677 * 61.59171 * 20 15 14 22 22 O 1.21603 * 120.00021 * 5.11907 * 21 20 15 23 23 C 1.47449 * 120.00233 * 185.11480 * 21 20 15 24 24 C 1.37981 * 124.15763 * 179.72868 * 23 21 20 25 25 S 1.72102 * 104.03056 * 179.90373 * 24 23 21 26 26 N 1.56396 * 96.15530 * 0.32406 * 25 24 23 27 27 N 1.27417 * 109.88105 * 359.80468 * 26 25 24 28 28 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99824 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.47256 * 60.00190 * 12 10 9 31 31 H 1.08996 * 109.47345 * 300.00142 * 12 10 9 32 32 H 1.00898 * 111.00006 * 303.95699 * 13 12 10 33 33 H 1.08997 * 109.47236 * 65.26862 * 14 13 12 34 34 H 1.08998 * 109.47540 * 305.26392 * 14 13 12 35 35 H 1.08993 * 110.71659 * 259.97109 * 17 15 14 36 36 H 1.08997 * 110.71958 * 23.24836 * 17 15 14 37 37 H 1.09006 * 111.00409 * 82.57391 * 18 17 15 38 38 H 1.09001 * 111.00486 * 206.38287 * 18 17 15 39 39 H 1.08997 * 110.37058 * 155.85213 * 19 18 17 40 40 H 1.09009 * 110.36401 * 278.06535 * 19 18 17 41 41 H 1.07999 * 127.97795 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1984 -5.9795 -0.0030 14 6 1.4981 -7.2708 -0.0031 15 6 2.5178 -8.4040 0.1272 16 1 3.2467 -8.3413 -0.6808 17 6 3.2356 -8.3100 1.4902 18 6 3.3795 -9.7966 1.9104 19 6 2.0650 -10.4041 1.3600 20 7 1.8302 -9.7028 0.0847 21 6 1.1045 -10.1739 -0.9487 22 8 1.0528 -9.5487 -1.9904 23 6 0.3732 -11.4474 -0.8162 24 6 -0.3984 -12.0052 -1.8149 25 16 -0.9967 -13.4599 -1.1166 26 7 -0.3009 -13.2778 0.2722 27 7 0.3716 -12.1956 0.2813 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6161 -4.9205 -0.8903 31 1 0.6182 -4.9209 0.8896 32 1 2.8321 -5.9121 -0.7852 33 1 0.9458 -7.3846 -0.9359 34 1 0.8043 -7.3081 0.8368 35 1 4.2146 -7.8442 1.3790 36 1 2.6265 -7.7631 2.2099 37 1 4.2490 -10.2538 1.4379 38 1 3.4310 -9.8929 2.9949 39 1 2.1841 -11.4739 1.1884 40 1 1.2433 -10.2208 2.0524 41 1 -0.5824 -11.6191 -2.8066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270244534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:33 Heat of formation + Delta-G solvation = -10.558104 kcal Electronic energy + Delta-G solvation = -26243.216269 eV Core-core repulsion = 22285.061177 eV Total energy + Delta-G solvation = -3958.155092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27932 -40.91139 -40.13413 -38.72992 -36.65016 -35.79696 -33.49801 -33.27359 -32.49076 -31.35187 -28.45357 -27.99195 -26.46425 -25.76549 -24.25234 -23.03514 -21.88755 -21.40171 -21.06578 -19.97235 -19.50177 -18.01853 -17.70848 -17.42073 -17.23169 -16.85537 -16.61379 -16.49206 -16.08823 -15.86874 -15.42129 -15.20348 -15.08259 -14.88954 -14.30221 -14.06346 -13.89185 -13.60047 -13.50349 -13.29094 -13.22296 -13.05149 -12.86038 -12.68902 -12.42235 -12.12197 -12.11052 -11.88665 -11.62959 -11.51344 -11.45027 -11.20363 -11.18523 -10.89858 -10.39245 -10.02861 -9.84480 -9.41723 -8.47212 -5.96237 -0.96673 -0.08111 0.27392 0.51563 1.37984 1.41661 1.54842 1.70524 1.92438 2.03140 2.28997 2.65021 2.92882 3.19606 3.43177 3.53106 3.63161 3.66897 3.84317 3.88547 4.22664 4.23959 4.30654 4.32041 4.37965 4.48031 4.51904 4.66260 4.72134 4.88872 5.01153 5.03322 5.15285 5.30963 5.40283 5.40553 5.78834 6.03458 6.24212 6.27172 6.40238 6.58481 6.83570 7.11258 7.54309 8.09133 8.70316 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.001964 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.790219 B =14250.407667 C =15000.835653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.619 6.619 12 C 0.066 3.934 13 N -0.665 5.665 14 C 0.059 3.941 15 C 0.143 3.857 16 H 0.069 0.931 17 C -0.108 4.108 18 C -0.127 4.127 19 C 0.105 3.895 20 N -0.595 5.595 21 C 0.610 3.390 22 O -0.559 6.559 23 C -0.043 4.043 24 C -0.240 4.240 25 S 0.566 5.434 26 N -0.330 5.330 27 N -0.224 5.224 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.344 0.656 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -30.616 -0.226 30.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.506 6.506 12 C -0.067 4.067 13 N -0.298 5.298 14 C -0.071 4.071 15 C 0.039 3.961 16 H 0.087 0.913 17 C -0.146 4.146 18 C -0.165 4.165 19 C -0.017 4.017 20 N -0.326 5.326 21 C 0.395 3.605 22 O -0.437 6.437 23 C -0.191 4.191 24 C -0.397 4.397 25 S 0.702 5.298 26 N -0.311 5.311 27 N -0.093 5.093 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.163 0.837 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.996 -31.621 1.034 31.890 hybrid contribution -0.074 2.424 -1.824 3.034 sum -4.070 -29.198 -0.791 29.491 Atomic orbital electron populations 1.69676 1.06889 1.29335 1.50311 1.26085 0.96580 1.02534 0.96252 0.84897 0.77895 0.76707 0.78645 1.19645 1.19511 1.19652 1.19687 0.92760 0.83930 1.49913 0.90156 1.41928 1.09336 1.04738 1.65025 1.20723 0.88227 0.85965 0.82315 1.90487 1.15634 1.87893 1.56560 1.21518 0.94008 0.88277 1.02864 1.60005 1.18715 1.00093 1.50950 1.22198 0.96004 0.88251 1.00618 1.21526 0.93125 0.81037 1.00408 0.91263 1.22524 1.01187 0.97263 0.93635 1.22882 0.96521 0.94152 1.02935 1.22650 0.98235 0.97713 0.83115 1.48422 1.49054 1.18823 1.16334 1.16624 0.78443 0.82853 0.82613 1.90837 1.64582 1.59579 1.28682 1.22409 1.05228 0.99811 0.91622 1.29260 1.00649 1.02517 1.07267 1.81211 1.35486 1.12556 1.00579 1.78355 1.15311 1.15727 1.21689 1.71739 1.14924 0.99495 1.23150 0.91283 0.77028 0.92326 0.87646 0.83744 0.95594 0.90295 0.89676 0.90230 0.90108 0.87475 0.88753 0.90562 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 13.05 21.66 0.28 -50.20 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.57 -30.15 5.29 -306.99 -1.62 -31.77 16 10 C 0.44 21.54 7.82 87.66 0.69 22.23 16 11 O -0.62 -34.83 15.78 -3.06 -0.05 -34.88 16 12 C 0.07 2.40 6.16 85.56 0.53 2.93 16 13 N -0.67 -22.24 5.82 -517.92 -3.01 -25.25 16 14 C 0.06 1.66 5.04 86.30 0.43 2.09 16 15 C 0.14 3.47 3.09 45.34 0.14 3.61 16 16 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 17 C -0.11 -2.19 6.21 31.78 0.20 -1.99 16 18 C -0.13 -1.87 7.08 31.99 0.23 -1.64 16 19 C 0.10 1.82 5.89 86.86 0.51 2.34 16 20 N -0.59 -13.52 3.07 -791.85 -2.43 -15.95 16 21 C 0.61 15.35 7.58 86.67 0.66 16.00 16 22 O -0.56 -17.36 15.99 -4.04 -0.06 -17.42 16 23 C -0.04 -0.85 6.75 41.36 0.28 -0.57 16 24 C -0.24 -3.02 11.21 67.76 0.76 -2.26 16 25 S 0.57 4.38 23.38 -56.49 -1.32 3.06 16 26 N -0.33 -5.26 12.49 37.02 0.46 -4.80 16 27 N -0.22 -4.27 8.66 -50.34 -0.44 -4.71 16 28 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.40 19.85 7.90 -92.71 -0.73 19.11 16 30 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 32 H 0.34 12.26 8.49 -89.70 -0.76 11.50 16 33 H 0.03 0.81 6.96 -2.39 -0.02 0.79 16 34 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.71 7.82 -2.39 -0.02 1.69 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.63 6.42 -2.39 -0.02 1.61 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.22 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -74.43 362.59 -0.85 -75.28 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.39 Total: 37.19 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 5.70 Total: 23.96 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -6.75 Total: -132.68 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.11 Total: -52.30 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.32 Total: 3.06 kcal Total: -74.43 -0.85 -75.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270244534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.722 kcal (2) G-P(sol) polarization free energy of solvation -74.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds