Wall clock time and date at job start Tue Mar 31 2020 22:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47022 * 270.00364 * 3 2 1 5 5 H 1.48498 * 109.46902 * 30.00527 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00464 * 3 2 1 7 7 C 1.38959 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99889 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99975 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99720 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46889 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99933 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47123 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.47589 * 295.00639 * 15 14 13 17 17 N 1.46500 * 109.47003 * 55.00204 * 15 14 13 18 18 C 1.34773 * 120.00509 * 204.99732 * 17 15 14 19 19 O 1.21620 * 119.99677 * 0.02562 * 18 17 15 20 20 C 1.47167 * 120.00655 * 180.02562 * 18 17 15 21 21 C 1.38244 * 128.48116 * 179.97438 * 20 18 17 22 22 N 1.31237 * 111.89293 * 179.97438 * 21 20 18 23 23 N 1.27337 * 120.03760 * 0.02562 * 22 21 20 24 24 S 1.56642 * 109.73924 * 359.69102 * 23 22 21 25 25 C 1.52996 * 109.47215 * 175.00127 * 15 14 13 26 26 C 1.53002 * 117.49888 * 111.25646 * 25 15 14 27 27 C 1.53000 * 117.50107 * 179.91408 * 25 15 14 28 28 H 0.97002 * 119.99826 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99752 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47518 * 60.00209 * 12 10 9 31 31 H 1.08998 * 109.47707 * 299.99784 * 12 10 9 32 32 H 1.00893 * 111.00416 * 303.95888 * 13 12 10 33 33 H 1.08997 * 109.46710 * 60.00264 * 14 13 12 34 34 H 1.08996 * 109.47191 * 300.00285 * 14 13 12 35 35 H 0.97006 * 119.99923 * 24.99965 * 17 15 14 36 36 H 1.08001 * 124.05519 * 0.03041 * 21 20 18 37 37 H 1.09002 * 115.54951 * 325.58620 * 25 15 14 38 38 H 1.09000 * 117.49996 * 215.00804 * 26 25 15 39 39 H 1.08999 * 117.49664 * 0.02562 * 26 25 15 40 40 H 1.09008 * 117.49673 * 359.97438 * 27 25 15 41 41 H 1.08999 * 117.49959 * 144.99502 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4400 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.4979 -7.2709 0.0005 15 6 2.5228 -8.4069 -0.0010 16 1 3.0873 -8.3858 -0.9331 17 7 3.4398 -8.2387 1.1291 18 6 4.6787 -8.7667 1.0761 19 8 5.0355 -9.3824 0.0898 20 6 5.5997 -8.5982 2.2115 21 6 6.8955 -9.0613 2.3441 22 7 7.4205 -8.7225 3.4981 23 7 6.7390 -8.0460 4.3344 24 16 5.3210 -7.7450 3.7410 25 6 1.7977 -9.7481 0.1259 26 6 1.8112 -10.6763 -1.0903 27 6 2.6543 -11.0157 0.1413 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6167 -4.9209 -0.8897 31 1 0.6173 -4.9206 0.8903 32 1 2.8326 -5.9125 -0.7824 33 1 0.8721 -7.3455 -0.8888 34 1 0.8740 -7.3450 0.8911 35 1 3.1553 -7.7473 1.9156 36 1 7.4139 -9.6325 1.5882 37 1 0.8993 -9.7403 0.7431 38 1 0.9216 -11.2791 -1.2733 39 1 2.3370 -10.3316 -1.9807 40 1 3.7346 -10.8941 0.0606 41 1 2.3196 -11.8418 0.7687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276545512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:20 Heat of formation + Delta-G solvation = 32.938355 kcal Electronic energy + Delta-G solvation = -26243.463832 eV Core-core repulsion = 22287.194888 eV Total energy + Delta-G solvation = -3956.268944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06633 -40.17507 -38.37973 -37.61114 -35.71272 -34.18316 -33.72913 -32.31560 -31.28483 -29.80347 -27.69481 -26.32691 -24.27376 -23.40510 -22.50057 -22.25694 -20.91091 -20.66404 -19.51140 -19.30301 -17.98081 -17.60133 -16.84638 -16.35930 -16.13937 -15.76879 -15.41679 -15.20792 -14.80892 -14.59681 -14.40248 -14.27928 -13.90345 -13.46440 -13.33222 -13.08966 -12.93230 -12.23713 -12.09600 -12.08053 -11.66021 -11.60699 -11.55076 -11.50407 -11.08002 -10.64995 -10.54328 -10.44937 -10.42806 -10.31198 -10.26494 -10.21607 -10.04502 -9.55855 -9.25042 -8.56922 -8.20489 -8.01681 -6.46757 -3.87664 -0.49385 0.58890 1.25875 1.74084 2.67351 2.75609 3.14482 3.23758 3.29447 3.63039 3.80419 3.84293 3.92444 4.18559 4.43809 4.50027 4.56053 4.68651 4.83416 4.88571 5.04562 5.13900 5.19716 5.22489 5.31993 5.43032 5.49361 5.67853 5.70295 5.74201 5.87340 5.93873 6.04619 6.17621 6.22415 7.02010 7.16375 7.40659 7.47638 7.50625 7.84082 8.00863 8.55470 9.12897 9.48628 9.99648 10.70838 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002791 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.882170 B =10030.201417 C =12093.159417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.050 3.950 15 C 0.181 3.819 16 H 0.093 0.907 17 N -0.692 5.692 18 C 0.607 3.393 19 O -0.522 6.522 20 C -0.286 4.286 21 C 0.071 3.929 22 N -0.255 5.255 23 N -0.261 5.261 24 S 0.440 5.560 25 C -0.172 4.172 26 C -0.168 4.168 27 C -0.182 4.182 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.352 0.648 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.214 0.786 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -20.971 3.297 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.080 4.080 15 C 0.076 3.924 16 H 0.111 0.889 17 N -0.342 5.342 18 C 0.390 3.610 19 O -0.400 6.400 20 C -0.427 4.427 21 C -0.096 4.096 22 N -0.119 5.119 23 N -0.242 5.242 24 S 0.574 5.426 25 C -0.191 4.191 26 C -0.206 4.206 27 C -0.219 4.219 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.171 0.829 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.231 0.769 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.869 -20.395 5.069 21.098 hybrid contribution -0.649 0.458 -1.844 2.008 sum 1.220 -19.937 3.225 20.233 Atomic orbital electron populations 1.69605 1.05947 1.28223 1.50464 1.25259 0.95627 0.99737 0.97221 0.85866 0.79284 0.80790 0.78422 1.20397 1.20886 1.19375 1.19699 0.93368 0.82219 1.47702 0.87928 1.41860 1.09196 1.04614 1.64211 1.19780 0.88390 0.84698 0.84700 1.90533 1.13723 1.87028 1.55465 1.21679 0.94264 0.90877 1.01364 1.60071 1.18821 0.99660 1.51607 1.22259 0.95077 0.88622 1.02033 1.20599 0.89586 0.92119 0.90051 0.88912 1.45677 1.12609 1.54920 1.21024 1.16390 0.80914 0.79194 0.84468 1.90771 1.75988 1.41544 1.31722 1.28057 1.01000 1.10378 1.03239 1.24442 0.90994 0.99147 0.95015 1.70700 1.28569 1.11162 1.01450 1.78844 1.04470 1.16055 1.24828 1.82787 1.19257 1.38150 1.02362 1.22653 1.01840 0.91157 1.03489 1.22936 1.02363 1.02683 0.92615 1.23287 1.00351 0.97418 1.00878 0.91829 0.77466 0.93698 0.89480 0.82887 0.93264 0.90156 0.75902 0.76914 0.87461 0.88856 0.88575 0.86456 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.67 5.29 -10.96 -0.06 -13.72 16 10 C 0.44 9.75 7.82 -10.99 -0.09 9.67 16 11 O -0.58 -15.12 15.78 5.55 0.09 -15.03 16 12 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 13 N -0.67 -9.14 5.85 -115.06 -0.67 -9.81 16 14 C 0.05 0.48 5.23 -3.82 -0.02 0.46 16 15 C 0.18 1.72 2.51 -67.93 -0.17 1.55 16 16 H 0.09 1.03 7.33 -51.93 -0.38 0.65 16 17 N -0.69 -6.83 4.78 -54.97 -0.26 -7.09 16 18 C 0.61 6.83 7.14 -12.64 -0.09 6.74 16 19 O -0.52 -6.99 14.00 5.26 0.07 -6.91 16 20 C -0.29 -2.97 6.81 -35.96 -0.25 -3.21 16 21 C 0.07 0.73 11.55 -17.80 -0.21 0.53 16 22 N -0.25 -3.08 11.54 30.36 0.35 -2.73 16 23 N -0.26 -3.14 12.51 60.35 0.75 -2.38 16 24 S 0.44 4.18 23.05 -107.50 -2.48 1.70 16 25 C -0.17 -1.40 5.36 -90.62 -0.49 -1.89 16 26 C -0.17 -1.36 10.18 -26.69 -0.27 -1.63 16 27 C -0.18 -1.64 9.73 -26.70 -0.26 -1.90 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.35 5.32 8.43 -39.30 -0.33 4.99 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.41 3.62 8.03 -40.82 -0.33 3.29 16 36 H 0.21 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.12 1.30 5.02 -51.92 -0.26 1.04 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -32.26 369.64 -7.97 -40.23 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -4.93 Total: 14.46 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.11 Total: 3.28 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.84 Total: -58.97 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.16 Total: -21.94 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.48 Total: 1.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.26 -7.97 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276545512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.167 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds