Wall clock time and date at job start Tue Mar 31 2020 22:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47022 * 270.00364 * 3 2 1 5 5 H 1.48498 * 109.46902 * 30.00527 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00464 * 3 2 1 7 7 C 1.38959 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99889 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99975 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99720 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46889 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99933 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47123 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.47589 * 295.00639 * 15 14 13 17 17 N 1.46500 * 109.47003 * 55.00204 * 15 14 13 18 18 C 1.34773 * 120.00509 * 204.99732 * 17 15 14 19 19 O 1.21620 * 119.99677 * 0.02562 * 18 17 15 20 20 C 1.47167 * 120.00655 * 180.02562 * 18 17 15 21 21 C 1.38244 * 128.48116 * 179.97438 * 20 18 17 22 22 N 1.31237 * 111.89293 * 179.97438 * 21 20 18 23 23 N 1.27337 * 120.03760 * 0.02562 * 22 21 20 24 24 S 1.56642 * 109.73924 * 359.69102 * 23 22 21 25 25 C 1.52996 * 109.47215 * 175.00127 * 15 14 13 26 26 C 1.53002 * 117.49888 * 111.25646 * 25 15 14 27 27 C 1.53000 * 117.50107 * 179.91408 * 25 15 14 28 28 H 0.97002 * 119.99826 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99752 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47518 * 60.00209 * 12 10 9 31 31 H 1.08998 * 109.47707 * 299.99784 * 12 10 9 32 32 H 1.00893 * 111.00416 * 303.95888 * 13 12 10 33 33 H 1.08997 * 109.46710 * 60.00264 * 14 13 12 34 34 H 1.08996 * 109.47191 * 300.00285 * 14 13 12 35 35 H 0.97006 * 119.99923 * 24.99965 * 17 15 14 36 36 H 1.08001 * 124.05519 * 0.03041 * 21 20 18 37 37 H 1.09002 * 115.54951 * 325.58620 * 25 15 14 38 38 H 1.09000 * 117.49996 * 215.00804 * 26 25 15 39 39 H 1.08999 * 117.49664 * 0.02562 * 26 25 15 40 40 H 1.09008 * 117.49673 * 359.97438 * 27 25 15 41 41 H 1.08999 * 117.49959 * 144.99502 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4400 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.4979 -7.2709 0.0005 15 6 2.5228 -8.4069 -0.0010 16 1 3.0873 -8.3858 -0.9331 17 7 3.4398 -8.2387 1.1291 18 6 4.6787 -8.7667 1.0761 19 8 5.0355 -9.3824 0.0898 20 6 5.5997 -8.5982 2.2115 21 6 6.8955 -9.0613 2.3441 22 7 7.4205 -8.7225 3.4981 23 7 6.7390 -8.0460 4.3344 24 16 5.3210 -7.7450 3.7410 25 6 1.7977 -9.7481 0.1259 26 6 1.8112 -10.6763 -1.0903 27 6 2.6543 -11.0157 0.1413 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6167 -4.9209 -0.8897 31 1 0.6173 -4.9206 0.8903 32 1 2.8326 -5.9125 -0.7824 33 1 0.8721 -7.3455 -0.8888 34 1 0.8740 -7.3450 0.8911 35 1 3.1553 -7.7473 1.9156 36 1 7.4139 -9.6325 1.5882 37 1 0.8993 -9.7403 0.7431 38 1 0.9216 -11.2791 -1.2733 39 1 2.3370 -10.3316 -1.9807 40 1 3.7346 -10.8941 0.0606 41 1 2.3196 -11.8418 0.7687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276545512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:19 Heat of formation + Delta-G solvation = 7.580079 kcal Electronic energy + Delta-G solvation = -26244.563450 eV Core-core repulsion = 22287.194888 eV Total energy + Delta-G solvation = -3957.368561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91747 -41.02441 -40.08361 -38.46773 -36.73168 -35.86332 -34.89739 -33.26106 -33.13892 -30.80028 -28.66440 -27.71396 -25.84065 -24.29424 -23.20277 -23.08356 -21.75572 -21.48718 -20.95051 -20.30927 -19.88374 -18.53871 -17.80394 -17.58467 -17.16820 -16.87083 -16.44490 -16.36745 -16.00679 -15.87120 -15.72076 -15.31798 -15.10166 -14.64084 -14.62979 -14.22715 -13.80707 -13.59348 -13.38877 -13.07477 -12.96424 -12.83170 -12.73445 -12.40511 -12.32259 -12.28606 -12.12515 -11.49122 -11.47303 -11.32501 -11.16257 -11.12673 -10.99655 -10.87578 -10.32431 -10.05506 -9.99033 -9.33520 -8.45679 -5.93525 -1.33845 -0.21608 0.42994 0.89250 1.38078 1.42469 1.54279 1.85134 1.91079 2.09317 2.29501 2.83044 2.96871 3.05678 3.22603 3.50895 3.63259 3.71726 3.75015 3.99602 4.15656 4.24477 4.31663 4.39665 4.49962 4.57258 4.57693 4.64485 4.74764 4.87601 4.93585 5.08213 5.29529 5.31146 5.42479 5.46374 5.87762 6.10191 6.33189 6.35047 6.57149 6.62534 7.00675 7.15194 7.59971 8.15531 8.71593 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002791 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.882170 B =10030.201417 C =12093.159417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.988 3.012 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.679 5.679 14 C 0.056 3.944 15 C 0.183 3.817 16 H 0.073 0.927 17 N -0.687 5.687 18 C 0.606 3.394 19 O -0.547 6.547 20 C -0.297 4.297 21 C 0.073 3.927 22 N -0.277 5.277 23 N -0.292 5.292 24 S 0.494 5.506 25 C -0.162 4.162 26 C -0.164 4.164 27 C -0.192 4.192 28 H 0.277 0.723 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.341 0.659 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.411 0.589 36 H 0.231 0.769 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 -21.469 3.561 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.311 5.311 14 C -0.073 4.073 15 C 0.078 3.922 16 H 0.092 0.908 17 N -0.336 5.336 18 C 0.390 3.610 19 O -0.427 6.427 20 C -0.439 4.439 21 C -0.095 4.095 22 N -0.139 5.139 23 N -0.273 5.273 24 S 0.628 5.372 25 C -0.182 4.182 26 C -0.202 4.202 27 C -0.229 4.229 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.055 -20.905 5.352 21.579 hybrid contribution -0.113 0.559 -1.942 2.024 sum -0.058 -20.347 3.411 20.631 Atomic orbital electron populations 1.69656 1.06702 1.29205 1.50469 1.25957 0.96486 1.02203 0.96426 0.85000 0.77957 0.77283 0.78565 1.19806 1.19578 1.19908 1.19625 0.92616 0.84163 1.49783 0.90516 1.41927 1.09342 1.04687 1.65169 1.20980 0.88272 0.86276 0.81987 1.90507 1.15979 1.87994 1.56579 1.21542 0.93843 0.87608 1.03585 1.60069 1.18933 1.00778 1.51338 1.22336 0.94943 0.86206 1.03817 1.20591 0.89358 0.93104 0.89105 0.90840 1.45682 1.12258 1.54405 1.21301 1.16475 0.81284 0.78952 0.84291 1.90764 1.76508 1.42719 1.32715 1.28083 1.01123 1.10983 1.03686 1.24745 0.91105 0.98830 0.94852 1.70734 1.29307 1.11892 1.02012 1.78664 1.05939 1.16956 1.25766 1.82504 1.17358 1.36341 1.00957 1.22639 1.01952 0.89820 1.03785 1.22990 1.02583 1.02592 0.92030 1.23223 0.99273 0.98396 1.02030 0.91348 0.76917 0.91439 0.86930 0.84114 0.91659 0.87947 0.75239 0.75245 0.85374 0.87109 0.89499 0.88714 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.28 13.05 21.67 0.28 -47.99 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 8 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -27.91 5.29 -306.98 -1.62 -29.54 16 10 C 0.44 19.24 7.82 87.66 0.69 19.92 16 11 O -0.62 -32.75 15.78 -3.06 -0.05 -32.80 16 12 C 0.07 1.91 6.17 85.56 0.53 2.44 16 13 N -0.68 -17.18 5.85 -517.93 -3.03 -20.21 16 14 C 0.06 0.90 5.23 86.30 0.45 1.35 16 15 C 0.18 3.14 2.51 44.99 0.11 3.26 16 16 H 0.07 1.59 7.33 -2.39 -0.02 1.57 16 17 N -0.69 -12.64 4.78 -446.08 -2.13 -14.77 16 18 C 0.61 13.39 7.14 86.59 0.62 14.01 16 19 O -0.55 -14.76 14.00 -4.09 -0.06 -14.82 16 20 C -0.30 -6.05 6.81 24.62 0.17 -5.88 16 21 C 0.07 1.48 11.55 84.78 0.98 2.46 16 22 N -0.28 -6.67 11.54 -57.87 -0.67 -7.34 16 23 N -0.29 -6.95 12.51 37.02 0.46 -6.49 16 24 S 0.49 8.95 23.05 -56.49 -1.30 7.65 16 25 C -0.16 -2.25 5.36 -10.79 -0.06 -2.31 16 26 C -0.16 -2.34 10.18 30.62 0.31 -2.03 16 27 C -0.19 -3.18 9.73 30.62 0.30 -2.89 16 28 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 29 H 0.40 18.21 7.90 -92.71 -0.73 17.48 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.34 10.00 8.43 -89.70 -0.76 9.24 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 6.55 8.03 -92.70 -0.74 5.80 16 36 H 0.23 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.13 1.30 8.11 -2.39 -0.02 1.28 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.40 8.05 -2.39 -0.02 1.38 16 40 H 0.09 2.08 5.02 -2.38 -0.01 2.07 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.68 369.64 -1.82 -72.50 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -1.11 Total: 36.87 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.37 Total: 12.71 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.71 Total: -126.34 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.11 Total: -47.62 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 8.95 SS G_CDS: -1.30 Total: 7.65 kcal Total: -70.68 -1.82 -72.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276545512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.078 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds