Wall clock time and date at job start Tue Mar 31 2020 22:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48498 * 109.47540 * 240.00417 * 3 2 1 5 5 H 1.48502 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47031 * 120.00091 * 3 2 1 7 7 C 1.38951 * 120.00476 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99994 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00074 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99969 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47041 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47218 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.47478 * 64.99626 * 15 14 13 17 17 N 1.46497 * 109.47141 * 304.99487 * 15 14 13 18 18 C 1.34782 * 120.00148 * 154.99996 * 17 15 14 19 19 O 1.21622 * 119.99653 * 0.02562 * 18 17 15 20 20 C 1.47171 * 120.00184 * 180.02562 * 18 17 15 21 21 C 1.38241 * 128.47609 * 179.97438 * 20 18 17 22 22 N 1.31242 * 111.88701 * 179.73439 * 21 20 18 23 23 N 1.27337 * 120.04085 * 0.24773 * 22 21 20 24 24 S 1.56636 * 109.73928 * 359.97438 * 23 22 21 25 25 C 1.53003 * 109.47101 * 184.99896 * 15 14 13 26 26 C 1.53000 * 117.49618 * 248.74733 * 25 15 14 27 27 C 1.53000 * 117.49907 * 180.08480 * 25 15 14 28 28 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99699 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47057 * 59.99680 * 12 10 9 31 31 H 1.08997 * 109.47291 * 299.99812 * 12 10 9 32 32 H 1.00903 * 111.00315 * 56.04580 * 13 12 10 33 33 H 1.08998 * 109.47328 * 59.99568 * 14 13 12 34 34 H 1.09004 * 109.46946 * 300.00200 * 14 13 12 35 35 H 0.97005 * 119.99940 * 335.00421 * 17 15 14 36 36 H 1.08002 * 124.05835 * 0.02562 * 21 20 18 37 37 H 1.08998 * 115.54979 * 34.40993 * 25 15 14 38 38 H 1.08993 * 117.50226 * 359.97438 * 26 25 15 39 39 H 1.08999 * 117.50135 * 145.02219 * 26 25 15 40 40 H 1.08999 * 117.50000 * 214.97603 * 27 25 15 41 41 H 1.09002 * 117.50104 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0028 15 6 2.5234 -8.4067 -0.0027 16 1 3.0886 -8.3860 0.9291 17 7 3.4395 -8.2380 -1.1334 18 6 4.6785 -8.7659 -1.0815 19 8 5.0359 -9.3827 -0.0961 20 6 5.5990 -8.5959 -2.2172 21 6 6.8951 -9.0579 -2.3504 22 7 7.4174 -8.7231 -3.5069 23 7 6.7351 -8.0465 -4.3426 24 16 5.3169 -7.7475 -3.7486 25 6 1.7983 -9.7480 -0.1296 26 6 1.8127 -10.6767 1.0862 27 6 2.6551 -11.0155 -0.1462 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3907 0.0002 30 1 0.6176 -4.9205 -0.8913 31 1 0.6170 -4.9209 0.8886 32 1 2.8335 -5.9127 0.7798 33 1 0.8738 -7.3447 -0.8930 34 1 0.8732 -7.3459 0.8869 35 1 3.1543 -7.7463 -1.9194 36 1 7.4140 -9.6299 -1.5954 37 1 0.8994 -9.7400 -0.7460 38 1 2.3391 -10.3323 1.9764 39 1 0.9236 -11.2800 1.2694 40 1 2.3197 -11.8415 -0.7734 41 1 3.7354 -10.8938 -0.0672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276545516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:23 Heat of formation + Delta-G solvation = 32.990007 kcal Electronic energy + Delta-G solvation = -26243.061790 eV Core-core repulsion = 22286.795086 eV Total energy + Delta-G solvation = -3956.266704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06607 -40.17434 -38.37794 -37.61005 -35.71203 -34.18237 -33.72789 -32.31602 -31.28429 -29.80284 -27.69447 -26.32599 -24.27285 -23.40503 -22.50086 -22.25627 -20.91086 -20.66385 -19.51148 -19.30156 -17.98001 -17.60077 -16.84617 -16.35921 -16.13860 -15.76840 -15.41652 -15.20752 -14.80892 -14.59345 -14.40343 -14.28119 -13.90472 -13.46512 -13.32936 -13.08852 -12.93270 -12.23595 -12.09532 -12.07885 -11.65993 -11.60537 -11.54851 -11.50313 -11.05772 -10.64947 -10.54367 -10.47961 -10.44489 -10.31209 -10.26012 -10.21636 -10.04457 -9.54785 -9.25002 -8.56840 -8.20429 -8.01587 -6.46526 -3.87586 -0.49377 0.58866 1.25864 1.74042 2.67345 2.75591 3.16865 3.23116 3.27304 3.63045 3.80383 3.84409 3.92534 4.18575 4.43791 4.50041 4.56096 4.68692 4.83424 4.88604 5.04612 5.13984 5.19751 5.22545 5.31985 5.43036 5.49394 5.67887 5.70361 5.74245 5.87404 5.93917 6.04647 6.17720 6.22467 7.02121 7.16379 7.40636 7.47635 7.50527 7.84067 8.00751 8.55599 9.12882 9.48673 9.99756 10.70996 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002790 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.692176 B =10032.047233 C =12093.906597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.050 3.950 15 C 0.181 3.819 16 H 0.093 0.907 17 N -0.692 5.692 18 C 0.607 3.393 19 O -0.522 6.522 20 C -0.285 4.285 21 C 0.071 3.929 22 N -0.255 5.255 23 N -0.261 5.261 24 S 0.439 5.561 25 C -0.172 4.172 26 C -0.168 4.168 27 C -0.182 4.182 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.352 0.648 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.406 0.594 36 H 0.214 0.786 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 -20.953 -3.292 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.301 5.301 14 C -0.080 4.080 15 C 0.076 3.924 16 H 0.111 0.889 17 N -0.342 5.342 18 C 0.390 3.610 19 O -0.400 6.400 20 C -0.427 4.427 21 C -0.096 4.096 22 N -0.119 5.119 23 N -0.242 5.242 24 S 0.574 5.426 25 C -0.191 4.191 26 C -0.206 4.206 27 C -0.219 4.219 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.241 0.759 36 H 0.231 0.769 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.839 -20.380 -5.064 21.080 hybrid contribution -0.632 0.460 1.838 1.997 sum 1.208 -19.921 -3.226 20.216 Atomic orbital electron populations 1.69594 1.05943 1.28341 1.50383 1.25255 0.95624 0.99731 0.97195 0.85927 0.78793 0.80442 0.79127 1.19843 1.20945 1.19895 1.19652 0.93345 0.82234 1.47835 0.87978 1.41853 1.09191 1.04603 1.64202 1.19780 0.88391 0.84697 0.84717 1.90533 1.13722 1.87029 1.55484 1.21675 0.94266 0.90879 1.01361 1.60075 1.18781 0.99661 1.51633 1.22260 0.95080 0.88624 1.02032 1.20599 0.89605 0.92117 0.90034 0.88912 1.45678 1.12624 1.54906 1.21024 1.16394 0.80915 0.79199 0.84459 1.90771 1.75973 1.41495 1.31781 1.28057 1.00936 1.10489 1.03187 1.24443 0.91043 0.99147 0.94960 1.70701 1.28593 1.11155 1.01435 1.78843 1.04446 1.16006 1.24899 1.82784 1.19193 1.38338 1.02250 1.22653 1.01833 0.91155 1.03494 1.22936 1.02367 1.02678 0.92613 1.23288 1.00359 0.97419 1.00875 0.91768 0.77462 0.89487 0.93695 0.82890 0.90158 0.93264 0.75901 0.76912 0.87463 0.88574 0.88857 0.89444 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.67 5.29 -10.96 -0.06 -13.72 16 10 C 0.44 9.75 7.82 -10.99 -0.09 9.67 16 11 O -0.58 -15.12 15.78 5.55 0.09 -15.04 16 12 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 13 N -0.67 -9.14 5.85 -115.06 -0.67 -9.82 16 14 C 0.05 0.48 5.23 -3.82 -0.02 0.46 16 15 C 0.18 1.72 2.51 -67.93 -0.17 1.55 16 16 H 0.09 1.03 7.33 -51.93 -0.38 0.65 16 17 N -0.69 -6.83 4.78 -54.97 -0.26 -7.09 16 18 C 0.61 6.83 7.14 -12.63 -0.09 6.74 16 19 O -0.52 -6.99 14.00 5.26 0.07 -6.91 16 20 C -0.29 -2.97 6.81 -35.96 -0.25 -3.21 16 21 C 0.07 0.73 11.55 -17.80 -0.21 0.53 16 22 N -0.25 -3.08 11.54 30.36 0.35 -2.73 16 23 N -0.26 -3.14 12.51 60.35 0.75 -2.38 16 24 S 0.44 4.18 23.05 -107.50 -2.48 1.70 16 25 C -0.17 -1.41 5.36 -90.62 -0.49 -1.89 16 26 C -0.17 -1.36 10.18 -26.69 -0.27 -1.63 16 27 C -0.18 -1.64 9.74 -26.69 -0.26 -1.90 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.35 5.32 8.43 -39.29 -0.33 4.99 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 3.62 8.03 -40.82 -0.33 3.29 16 36 H 0.21 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.12 1.30 5.01 -51.93 -0.26 1.04 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -32.24 369.64 -7.97 -40.21 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -4.93 Total: 14.51 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.11 Total: 3.26 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.84 Total: -58.99 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.16 Total: -21.95 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.48 Total: 1.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.24 -7.97 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276545516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.199 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds