Wall clock time and date at job start Tue Mar 31 2020 22:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48498 * 109.47540 * 240.00417 * 3 2 1 5 5 H 1.48502 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47031 * 120.00091 * 3 2 1 7 7 C 1.38951 * 120.00476 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00036 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99994 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00074 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99969 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47041 * 179.97438 * 12 10 9 14 14 C 1.46903 * 111.00177 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47218 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.47478 * 64.99626 * 15 14 13 17 17 N 1.46497 * 109.47141 * 304.99487 * 15 14 13 18 18 C 1.34782 * 120.00148 * 154.99996 * 17 15 14 19 19 O 1.21622 * 119.99653 * 0.02562 * 18 17 15 20 20 C 1.47171 * 120.00184 * 180.02562 * 18 17 15 21 21 C 1.38241 * 128.47609 * 179.97438 * 20 18 17 22 22 N 1.31242 * 111.88701 * 179.73439 * 21 20 18 23 23 N 1.27337 * 120.04085 * 0.24773 * 22 21 20 24 24 S 1.56636 * 109.73928 * 359.97438 * 23 22 21 25 25 C 1.53003 * 109.47101 * 184.99896 * 15 14 13 26 26 C 1.53000 * 117.49618 * 248.74733 * 25 15 14 27 27 C 1.53000 * 117.49907 * 180.08480 * 25 15 14 28 28 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99699 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47057 * 59.99680 * 12 10 9 31 31 H 1.08997 * 109.47291 * 299.99812 * 12 10 9 32 32 H 1.00903 * 111.00315 * 56.04580 * 13 12 10 33 33 H 1.08998 * 109.47328 * 59.99568 * 14 13 12 34 34 H 1.09004 * 109.46946 * 300.00200 * 14 13 12 35 35 H 0.97005 * 119.99940 * 335.00421 * 17 15 14 36 36 H 1.08002 * 124.05835 * 0.02562 * 21 20 18 37 37 H 1.08998 * 115.54979 * 34.40993 * 25 15 14 38 38 H 1.08993 * 117.50226 * 359.97438 * 26 25 15 39 39 H 1.08999 * 117.50135 * 145.02219 * 26 25 15 40 40 H 1.08999 * 117.50000 * 214.97603 * 27 25 15 41 41 H 1.09002 * 117.50104 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0028 15 6 2.5234 -8.4067 -0.0027 16 1 3.0886 -8.3860 0.9291 17 7 3.4395 -8.2380 -1.1334 18 6 4.6785 -8.7659 -1.0815 19 8 5.0359 -9.3827 -0.0961 20 6 5.5990 -8.5959 -2.2172 21 6 6.8951 -9.0579 -2.3504 22 7 7.4174 -8.7231 -3.5069 23 7 6.7351 -8.0465 -4.3426 24 16 5.3169 -7.7475 -3.7486 25 6 1.7983 -9.7480 -0.1296 26 6 1.8127 -10.6767 1.0862 27 6 2.6551 -11.0155 -0.1462 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3907 0.0002 30 1 0.6176 -4.9205 -0.8913 31 1 0.6170 -4.9209 0.8886 32 1 2.8335 -5.9127 0.7798 33 1 0.8738 -7.3447 -0.8930 34 1 0.8732 -7.3459 0.8869 35 1 3.1543 -7.7463 -1.9194 36 1 7.4140 -9.6299 -1.5954 37 1 0.8994 -9.7400 -0.7460 38 1 2.3391 -10.3323 1.9764 39 1 0.9236 -11.2800 1.2694 40 1 2.3197 -11.8415 -0.7734 41 1 3.7354 -10.8938 -0.0672 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276545516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:22 Heat of formation + Delta-G solvation = 7.651818 kcal Electronic energy + Delta-G solvation = -26244.160536 eV Core-core repulsion = 22286.795086 eV Total energy + Delta-G solvation = -3957.365450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91694 -41.02371 -40.08203 -38.46705 -36.73146 -35.86209 -34.89702 -33.26078 -33.13908 -30.79994 -28.66388 -27.71317 -25.83996 -24.29417 -23.20275 -23.08396 -21.75559 -21.48704 -20.94959 -20.30914 -19.88276 -18.53813 -17.80345 -17.58406 -17.16793 -16.86992 -16.44467 -16.36571 -16.00649 -15.87437 -15.72091 -15.31766 -15.10130 -14.64118 -14.62717 -14.22671 -13.80720 -13.58795 -13.38592 -13.07253 -12.96285 -12.83172 -12.73103 -12.41955 -12.32289 -12.28686 -12.12713 -11.48558 -11.47144 -11.32582 -11.16251 -11.12600 -10.99712 -10.87495 -10.32364 -10.05478 -9.99104 -9.33553 -8.45452 -5.93483 -1.33813 -0.21601 0.43017 0.89228 1.39989 1.42416 1.52383 1.85098 1.91090 2.09437 2.29566 2.83050 2.96861 3.05673 3.22731 3.50936 3.63256 3.71741 3.75020 3.99596 4.15640 4.24481 4.31655 4.39664 4.49950 4.57248 4.57698 4.64481 4.74744 4.87616 4.93576 5.08220 5.29517 5.31161 5.42262 5.46402 5.87766 6.10153 6.33145 6.35026 6.57154 6.62605 7.00659 7.15105 7.59994 8.15560 8.71594 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002790 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.692176 B =10032.047233 C =12093.906597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.679 5.679 14 C 0.056 3.944 15 C 0.183 3.817 16 H 0.073 0.927 17 N -0.687 5.687 18 C 0.606 3.394 19 O -0.547 6.547 20 C -0.298 4.298 21 C 0.073 3.927 22 N -0.277 5.277 23 N -0.292 5.292 24 S 0.494 5.506 25 C -0.162 4.162 26 C -0.164 4.164 27 C -0.192 4.192 28 H 0.277 0.723 29 H 0.397 0.603 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.341 0.659 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.231 0.769 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -21.459 -3.571 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.311 5.311 14 C -0.073 4.073 15 C 0.078 3.922 16 H 0.092 0.908 17 N -0.336 5.336 18 C 0.390 3.610 19 O -0.427 6.427 20 C -0.439 4.439 21 C -0.095 4.095 22 N -0.139 5.139 23 N -0.273 5.273 24 S 0.628 5.372 25 C -0.182 4.182 26 C -0.202 4.202 27 C -0.229 4.229 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.049 -20.899 -5.363 21.577 hybrid contribution -0.102 0.560 1.940 2.022 sum -0.053 -20.339 -3.424 20.625 Atomic orbital electron populations 1.69647 1.06705 1.29288 1.50394 1.25954 0.96484 1.02204 0.96396 0.85065 0.77835 0.77045 0.78877 1.19787 1.19543 1.19895 1.19596 0.92635 0.84175 1.49898 0.90492 1.41922 1.09337 1.04679 1.65162 1.20980 0.88276 0.86275 0.82002 1.90507 1.15972 1.87995 1.56592 1.21539 0.93846 0.87613 1.03580 1.60073 1.18891 1.00780 1.51364 1.22337 0.94947 0.86208 1.03815 1.20591 0.89377 0.93100 0.89090 0.90839 1.45683 1.12273 1.54393 1.21301 1.16479 0.81284 0.78956 0.84284 1.90765 1.76492 1.42669 1.32774 1.28083 1.01060 1.11097 1.03638 1.24746 0.91156 0.98830 0.94797 1.70735 1.29330 1.11884 1.01995 1.78663 1.05916 1.16908 1.25840 1.82501 1.17291 1.36521 1.00841 1.22639 1.01946 0.89818 1.03789 1.22990 1.02586 1.02589 0.92028 1.23224 0.99282 0.98397 1.02028 0.91332 0.76919 0.86941 0.91437 0.84115 0.87949 0.91658 0.75238 0.75244 0.85377 0.89497 0.87110 0.88368 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.31 13.05 21.66 0.28 -48.03 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 8 H 0.08 4.56 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -27.91 5.29 -306.98 -1.62 -29.53 16 10 C 0.44 19.23 7.82 87.66 0.69 19.92 16 11 O -0.62 -32.74 15.78 -3.07 -0.05 -32.79 16 12 C 0.07 1.91 6.17 85.56 0.53 2.44 16 13 N -0.68 -17.19 5.85 -517.95 -3.03 -20.22 16 14 C 0.06 0.90 5.23 86.30 0.45 1.35 16 15 C 0.18 3.14 2.51 44.99 0.11 3.26 16 16 H 0.07 1.59 7.33 -2.39 -0.02 1.57 16 17 N -0.69 -12.64 4.78 -446.06 -2.13 -14.77 16 18 C 0.61 13.39 7.14 86.59 0.62 14.01 16 19 O -0.55 -14.76 14.00 -4.10 -0.06 -14.82 16 20 C -0.30 -6.05 6.81 24.62 0.17 -5.88 16 21 C 0.07 1.48 11.55 84.78 0.98 2.46 16 22 N -0.28 -6.67 11.54 -57.87 -0.67 -7.33 16 23 N -0.29 -6.95 12.51 37.02 0.46 -6.49 16 24 S 0.49 8.94 23.05 -56.49 -1.30 7.64 16 25 C -0.16 -2.25 5.36 -10.79 -0.06 -2.31 16 26 C -0.16 -2.34 10.18 30.62 0.31 -2.03 16 27 C -0.19 -3.19 9.74 30.62 0.30 -2.89 16 28 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.40 18.22 7.90 -92.71 -0.73 17.48 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.34 10.00 8.43 -89.69 -0.76 9.24 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.41 6.55 8.03 -92.70 -0.74 5.80 16 36 H 0.23 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.13 1.30 8.11 -2.39 -0.02 1.28 16 38 H 0.09 1.40 8.05 -2.39 -0.02 1.38 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 2.08 5.01 -2.39 -0.01 2.07 16 Total: -1.00 -70.62 369.64 -1.82 -72.44 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -1.11 Total: 37.03 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.37 Total: 12.65 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.71 Total: -126.37 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.11 Total: -47.60 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -1.30 Total: 7.64 kcal Total: -70.62 -1.82 -72.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276545516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.091 kcal (2) G-P(sol) polarization free energy of solvation -70.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds