Wall clock time and date at job start Tue Mar 31 2020 22:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99796 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 119.99892 * 3 2 1 7 7 C 1.38948 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99462 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99881 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99764 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00492 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47430 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99568 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46557 * 180.02562 * 14 13 12 16 16 H 1.08993 * 112.85329 * 45.33130 * 15 14 13 17 17 C 1.53784 * 113.61105 * 176.52945 * 15 14 13 18 18 C 1.53780 * 87.08183 * 139.97753 * 17 15 14 19 19 H 1.08998 * 113.61972 * 220.01842 * 18 17 15 20 20 N 1.46505 * 113.61582 * 89.19782 * 18 17 15 21 21 C 1.34775 * 120.00169 * 154.99955 * 20 18 17 22 22 O 1.21619 * 119.99977 * 0.02562 * 21 20 18 23 23 C 1.47164 * 119.99716 * 179.97438 * 21 20 18 24 24 C 1.38251 * 128.47172 * 179.70156 * 23 21 20 25 25 N 1.31240 * 111.88533 * 179.85213 * 24 23 21 26 26 N 1.27335 * 120.04204 * 0.49049 * 25 24 23 27 27 S 1.56638 * 109.73979 * 359.71867 * 26 25 24 28 28 C 1.53780 * 113.61175 * 274.13361 * 15 14 13 29 29 H 0.97001 * 120.00078 * 179.97438 * 1 2 3 30 30 H 0.96992 * 120.00064 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46952 * 300.00339 * 12 10 9 32 32 H 1.09000 * 109.46834 * 59.99909 * 12 10 9 33 33 H 1.00893 * 111.00096 * 303.94905 * 13 12 10 34 34 H 1.09000 * 109.47034 * 299.99751 * 14 13 12 35 35 H 1.08996 * 109.47536 * 60.00329 * 14 13 12 36 36 H 1.08997 * 113.61213 * 254.52597 * 17 15 14 37 37 H 1.09003 * 113.61608 * 25.43267 * 17 15 14 38 38 H 0.96997 * 119.99434 * 335.00065 * 20 18 17 39 39 H 1.07998 * 124.05974 * 0.02562 * 24 23 21 40 40 H 1.09000 * 113.61556 * 334.56780 * 28 15 14 41 41 H 1.08996 * 113.61788 * 105.47295 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.4982 -7.2708 0.0003 15 6 2.5232 -8.4068 0.0002 16 1 3.3310 -8.2481 0.7145 17 6 1.8916 -9.8063 0.0854 18 6 2.9503 -10.2601 -0.9334 19 1 2.5651 -10.9470 -1.6869 20 7 4.1937 -10.7303 -0.3176 21 6 4.9868 -11.5974 -0.9777 22 8 4.6704 -11.9891 -2.0848 23 6 6.2361 -12.0692 -0.3593 24 6 7.1684 -12.9529 -0.8703 25 7 8.1677 -13.1433 -0.0411 26 7 8.1846 -12.5479 1.0843 27 16 6.9096 -11.6492 1.2265 28 6 3.0111 -8.7959 -1.4053 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6175 -4.9205 0.8913 32 1 0.6169 -4.9209 -0.8886 33 1 2.8327 -5.9124 -0.7815 34 1 0.8737 -7.3455 0.8906 35 1 0.8729 -7.3451 -0.8894 36 1 1.9982 -10.2746 1.0639 37 1 0.8716 -9.8491 -0.2966 38 1 4.4462 -10.4176 0.5652 39 1 7.0858 -13.4274 -1.8369 40 1 2.2978 -8.5619 -2.1955 41 1 4.0203 -8.4497 -1.6285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276939564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:57 Heat of formation + Delta-G solvation = 26.938862 kcal Electronic energy + Delta-G solvation = -25205.880552 eV Core-core repulsion = 21249.351451 eV Total energy + Delta-G solvation = -3956.529101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39409 -40.64568 -38.93232 -38.32431 -35.46156 -34.27410 -33.67012 -32.49430 -31.10784 -28.91037 -27.92561 -26.14785 -25.57646 -24.11613 -23.39742 -22.12445 -21.29058 -19.96719 -19.78924 -19.41950 -17.98458 -17.92792 -16.84835 -16.47791 -16.43034 -15.82651 -15.55919 -15.36838 -15.08573 -14.82898 -14.56399 -14.24996 -13.96581 -13.68967 -13.31799 -13.24903 -13.12220 -12.82420 -12.57219 -12.49634 -11.91582 -11.68377 -11.24241 -11.16917 -10.95342 -10.90353 -10.82155 -10.65600 -10.64914 -10.44880 -10.41100 -10.21957 -9.88541 -9.61108 -9.56650 -8.55266 -8.16534 -8.05118 -6.77353 -3.90611 -0.83423 0.23855 0.92150 1.42496 2.33286 2.40331 3.29604 3.33688 3.46642 3.53959 3.82030 3.94966 4.03680 4.11420 4.17187 4.25353 4.38807 4.49142 4.66592 4.95826 5.02762 5.15615 5.21473 5.30217 5.32935 5.36933 5.43773 5.54707 5.62147 5.72020 5.79818 5.84296 5.84743 5.99620 6.18476 6.75234 7.08656 7.09588 7.45209 7.55864 7.78855 8.06067 8.58042 8.77722 9.45500 9.85534 10.66059 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.001714 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.650150 B =16335.394560 C =17280.832512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.010 4.010 3 Si 1.092 2.908 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.382 4.382 8 H 0.099 0.901 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.050 3.950 13 N -0.668 5.668 14 C 0.068 3.932 15 C -0.107 4.107 16 H 0.100 0.900 17 C -0.138 4.138 18 C 0.119 3.881 19 H 0.108 0.892 20 N -0.701 5.701 21 C 0.606 3.394 22 O -0.513 6.513 23 C -0.292 4.292 24 C 0.077 3.923 25 N -0.251 5.251 26 N -0.252 5.252 27 S 0.429 5.571 28 C -0.150 4.150 29 H 0.261 0.739 30 H 0.376 0.624 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.349 0.651 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.402 0.598 39 H 0.217 0.783 40 H 0.093 0.907 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 -26.138 1.004 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.212 4.212 3 Si 0.917 3.083 4 H -0.210 1.210 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.512 4.512 8 H 0.117 0.883 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.083 4.083 13 N -0.300 5.300 14 C -0.062 4.062 15 C -0.126 4.126 16 H 0.119 0.881 17 C -0.177 4.177 18 C 0.014 3.986 19 H 0.126 0.874 20 N -0.352 5.352 21 C 0.389 3.611 22 O -0.389 6.389 23 C -0.433 4.433 24 C -0.090 4.090 25 N -0.115 5.115 26 N -0.234 5.234 27 S 0.564 5.436 28 C -0.189 4.189 29 H 0.072 0.928 30 H 0.208 0.792 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.233 0.767 40 H 0.111 0.889 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.142 -24.564 2.498 25.443 hybrid contribution -1.253 -1.859 -1.780 2.863 sum 4.889 -26.423 0.718 26.881 Atomic orbital electron populations 1.70904 1.06510 1.29365 1.47207 1.26518 0.96553 1.02657 0.95485 0.83130 0.74434 0.73618 0.77081 1.21026 1.20408 1.20977 1.20532 0.94670 0.83871 1.52102 0.88336 1.41942 1.08186 1.05577 1.65675 1.19747 0.88428 0.84490 0.84514 1.90525 1.13692 1.86934 1.54928 1.21669 0.94429 0.91094 1.01063 1.60080 1.18810 0.99918 1.51229 1.21952 0.95092 0.88707 1.00407 1.22656 0.98915 0.93331 0.97709 0.88148 1.23355 0.98811 0.96029 0.99481 1.21977 0.83606 0.96241 0.96743 0.87417 1.45538 1.22990 1.45706 1.20987 1.16431 0.81029 0.78813 0.84780 1.90870 1.72293 1.57178 1.18558 1.28045 1.04327 1.08754 1.02146 1.24513 0.87234 0.95618 1.01602 1.70724 1.23446 1.19739 0.97637 1.78915 1.18158 1.10946 1.15356 1.82705 1.11706 1.36808 1.12341 1.23572 1.02884 0.94888 0.97521 0.92784 0.79151 0.89679 0.94018 0.83158 0.90955 0.95293 0.90559 0.88279 0.76296 0.76673 0.88869 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 13.68 55.50 0.76 -24.30 16 2 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 3 Si 1.09 24.11 29.92 -169.99 -5.09 19.03 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -10.70 9.68 -14.93 -0.14 -10.85 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.58 -14.35 5.28 -10.97 -0.06 -14.41 16 10 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 11 O -0.58 -15.62 15.78 5.54 0.09 -15.53 16 12 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 13 N -0.67 -10.00 6.13 -115.05 -0.70 -10.70 16 14 C 0.07 0.70 5.51 -3.82 -0.02 0.68 16 15 C -0.11 -0.86 3.77 -89.80 -0.34 -1.20 16 16 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 17 C -0.14 -0.80 7.39 -25.92 -0.19 -0.99 16 18 C 0.12 0.83 4.33 -67.02 -0.29 0.54 16 19 H 0.11 0.84 7.46 -51.93 -0.39 0.45 16 20 N -0.70 -4.58 5.26 -54.08 -0.28 -4.87 16 21 C 0.61 5.09 7.80 -12.64 -0.10 4.99 16 22 O -0.51 -5.96 16.58 5.26 0.09 -5.88 16 23 C -0.29 -2.08 6.81 -35.95 -0.25 -2.32 16 24 C 0.08 0.57 11.55 -17.80 -0.21 0.37 16 25 N -0.25 -2.32 11.54 30.36 0.35 -1.97 16 26 N -0.25 -2.26 12.51 60.35 0.75 -1.50 16 27 S 0.43 2.50 23.05 -107.50 -2.48 0.02 16 28 C -0.15 -1.20 7.44 -25.83 -0.19 -1.40 16 29 H 0.26 6.96 6.78 -40.82 -0.28 6.68 16 30 H 0.38 8.61 6.73 -40.82 -0.27 8.33 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.35 5.50 8.43 -39.30 -0.33 5.17 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.28 7.88 -51.93 -0.41 -0.13 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.40 1.82 8.13 -40.82 -0.33 1.49 16 39 H 0.22 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -35.39 370.32 -7.90 -43.30 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.97 Total: 10.73 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.94 Total: 0.50 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.82 Total: -57.74 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.17 Total: -21.41 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.09 Total: 19.03 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.48 Total: 0.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.39 -7.90 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276939564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.236 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds