Wall clock time and date at job start Tue Mar 31 2020 22:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99796 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 119.99892 * 3 2 1 7 7 C 1.38948 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99462 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99881 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99764 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00492 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47430 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99568 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46557 * 180.02562 * 14 13 12 16 16 H 1.08993 * 112.85329 * 45.33130 * 15 14 13 17 17 C 1.53784 * 113.61105 * 176.52945 * 15 14 13 18 18 C 1.53780 * 87.08183 * 139.97753 * 17 15 14 19 19 H 1.08998 * 113.61972 * 220.01842 * 18 17 15 20 20 N 1.46505 * 113.61582 * 89.19782 * 18 17 15 21 21 C 1.34775 * 120.00169 * 154.99955 * 20 18 17 22 22 O 1.21619 * 119.99977 * 0.02562 * 21 20 18 23 23 C 1.47164 * 119.99716 * 179.97438 * 21 20 18 24 24 C 1.38251 * 128.47172 * 179.70156 * 23 21 20 25 25 N 1.31240 * 111.88533 * 179.85213 * 24 23 21 26 26 N 1.27335 * 120.04204 * 0.49049 * 25 24 23 27 27 S 1.56638 * 109.73979 * 359.71867 * 26 25 24 28 28 C 1.53780 * 113.61175 * 274.13361 * 15 14 13 29 29 H 0.97001 * 120.00078 * 179.97438 * 1 2 3 30 30 H 0.96992 * 120.00064 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46952 * 300.00339 * 12 10 9 32 32 H 1.09000 * 109.46834 * 59.99909 * 12 10 9 33 33 H 1.00893 * 111.00096 * 303.94905 * 13 12 10 34 34 H 1.09000 * 109.47034 * 299.99751 * 14 13 12 35 35 H 1.08996 * 109.47536 * 60.00329 * 14 13 12 36 36 H 1.08997 * 113.61213 * 254.52597 * 17 15 14 37 37 H 1.09003 * 113.61608 * 25.43267 * 17 15 14 38 38 H 0.96997 * 119.99434 * 335.00065 * 20 18 17 39 39 H 1.07998 * 124.05974 * 0.02562 * 24 23 21 40 40 H 1.09000 * 113.61556 * 334.56780 * 28 15 14 41 41 H 1.08996 * 113.61788 * 105.47295 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.4982 -7.2708 0.0003 15 6 2.5232 -8.4068 0.0002 16 1 3.3310 -8.2481 0.7145 17 6 1.8916 -9.8063 0.0854 18 6 2.9503 -10.2601 -0.9334 19 1 2.5651 -10.9470 -1.6869 20 7 4.1937 -10.7303 -0.3176 21 6 4.9868 -11.5974 -0.9777 22 8 4.6704 -11.9891 -2.0848 23 6 6.2361 -12.0692 -0.3593 24 6 7.1684 -12.9529 -0.8703 25 7 8.1677 -13.1433 -0.0411 26 7 8.1846 -12.5479 1.0843 27 16 6.9096 -11.6492 1.2265 28 6 3.0111 -8.7959 -1.4053 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6175 -4.9205 0.8913 32 1 0.6169 -4.9209 -0.8886 33 1 2.8327 -5.9124 -0.7815 34 1 0.8737 -7.3455 0.8906 35 1 0.8729 -7.3451 -0.8894 36 1 1.9982 -10.2746 1.0639 37 1 0.8716 -9.8491 -0.2966 38 1 4.4462 -10.4176 0.5652 39 1 7.0858 -13.4274 -1.8369 40 1 2.2978 -8.5619 -2.1955 41 1 4.0203 -8.4497 -1.6285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276939564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:56 Heat of formation + Delta-G solvation = -1.644321 kcal Electronic energy + Delta-G solvation = -25207.120012 eV Core-core repulsion = 21249.351451 eV Total energy + Delta-G solvation = -3957.768561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99342 -41.27823 -40.31606 -39.48842 -36.76702 -36.02912 -34.49282 -33.16733 -33.04861 -29.92890 -28.68552 -27.09453 -26.63029 -25.47253 -24.32452 -22.88610 -21.90196 -21.52608 -20.48328 -20.15946 -19.96068 -18.61852 -18.21928 -17.28663 -17.05546 -16.99720 -16.81003 -16.24379 -16.05149 -15.69519 -15.66909 -15.52380 -15.25326 -15.03769 -14.50084 -14.23146 -13.87297 -13.78535 -13.39677 -13.31476 -13.13980 -13.01882 -12.78281 -12.61713 -11.91668 -11.89313 -11.87682 -11.54972 -11.52147 -11.47197 -11.26540 -11.23619 -11.09351 -10.97251 -10.40292 -10.21287 -10.10795 -9.34494 -8.92360 -6.06423 -1.41474 -0.29316 0.36711 0.82522 1.52934 1.55082 1.73806 1.78888 1.83035 2.01315 2.41074 2.83308 2.91129 3.16987 3.39407 3.49185 3.54671 3.62035 3.72907 3.88516 3.96195 4.15239 4.36334 4.46037 4.49188 4.53338 4.65879 4.73799 4.82110 4.85171 4.91229 5.07279 5.16129 5.19428 5.56509 5.60678 5.95164 6.03458 6.19434 6.38842 6.51695 6.58652 6.75014 6.85927 7.44851 7.93204 8.55415 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.001714 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.650150 B =16335.394560 C =17280.832512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.043 4.043 3 Si 1.133 2.867 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.411 4.411 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.440 3.560 11 O -0.619 6.619 12 C 0.065 3.935 13 N -0.683 5.683 14 C 0.068 3.932 15 C -0.106 4.106 16 H 0.095 0.905 17 C -0.119 4.119 18 C 0.119 3.881 19 H 0.101 0.899 20 N -0.691 5.691 21 C 0.609 3.391 22 O -0.550 6.550 23 C -0.304 4.304 24 C 0.077 3.923 25 N -0.278 5.278 26 N -0.289 5.289 27 S 0.504 5.496 28 C -0.153 4.153 29 H 0.260 0.740 30 H 0.385 0.615 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.342 0.658 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.413 0.587 39 H 0.231 0.769 40 H 0.095 0.905 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -26.757 1.767 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.241 4.241 3 Si 0.953 3.047 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.091 0.909 9 N -0.226 5.226 10 C 0.228 3.772 11 O -0.504 6.504 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.060 4.060 15 C -0.125 4.125 16 H 0.113 0.887 17 C -0.157 4.157 18 C 0.014 3.986 19 H 0.120 0.880 20 N -0.342 5.342 21 C 0.393 3.607 22 O -0.428 6.428 23 C -0.445 4.445 24 C -0.091 4.091 25 N -0.140 5.140 26 N -0.271 5.271 27 S 0.639 5.361 28 C -0.192 4.192 29 H 0.070 0.930 30 H 0.219 0.781 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.250 0.750 39 H 0.247 0.753 40 H 0.114 0.886 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.069 -25.213 3.298 25.928 hybrid contribution -0.944 -1.696 -1.980 2.773 sum 4.125 -26.909 1.318 27.255 Atomic orbital electron populations 1.70971 1.06960 1.29508 1.48120 1.27810 0.96717 1.05326 0.94237 0.82634 0.73816 0.70354 0.77901 1.19871 1.19741 1.19834 1.20514 0.93895 0.85731 1.53854 0.90945 1.42005 1.08632 1.05521 1.66483 1.20966 0.88335 0.86091 0.81823 1.90495 1.15949 1.87911 1.56095 1.21548 0.94119 0.88028 1.03095 1.60115 1.19076 1.01183 1.51156 1.22085 0.95619 0.86889 1.01395 1.22617 0.98582 0.93822 0.97449 0.88652 1.23293 0.98813 0.93687 0.99932 1.21964 0.84034 0.95326 0.97251 0.88048 1.45491 1.22638 1.44879 1.21235 1.16534 0.81232 0.78618 0.84328 1.90852 1.73218 1.58624 1.20150 1.27991 1.04067 1.09177 1.03272 1.24779 0.86838 0.95511 1.01958 1.70770 1.24468 1.20746 0.98040 1.78682 1.20259 1.12319 1.15797 1.82358 1.09299 1.34202 1.10238 1.23593 1.02058 0.95714 0.97798 0.92958 0.78098 0.87600 0.91661 0.84021 0.89980 0.94051 0.88890 0.86922 0.75019 0.75330 0.88625 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 13.68 21.66 0.30 -50.33 16 2 C -0.04 -2.30 5.50 84.93 0.47 -1.83 16 3 Si 1.13 48.11 29.92 68.60 2.05 50.17 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.41 -23.31 9.68 84.04 0.81 -22.50 16 8 H 0.07 4.42 7.16 -2.92 -0.02 4.40 16 9 N -0.59 -29.39 5.28 -306.99 -1.62 -31.01 16 10 C 0.44 20.41 7.82 87.66 0.69 21.09 16 11 O -0.62 -33.94 15.78 -3.07 -0.05 -33.98 16 12 C 0.06 2.05 6.17 85.56 0.53 2.58 16 13 N -0.68 -19.28 6.13 -517.92 -3.17 -22.45 16 14 C 0.07 1.23 5.51 86.30 0.48 1.70 16 15 C -0.11 -1.45 3.77 -10.27 -0.04 -1.49 16 16 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 17 C -0.12 -0.99 7.39 31.12 0.23 -0.76 16 18 C 0.12 1.43 4.33 45.58 0.20 1.63 16 19 H 0.10 1.43 7.46 -2.39 -0.02 1.41 16 20 N -0.69 -7.91 5.26 -443.27 -2.33 -10.24 16 21 C 0.61 9.68 7.80 86.59 0.68 10.36 16 22 O -0.55 -12.64 16.58 -4.09 -0.07 -12.71 16 23 C -0.30 -4.05 6.81 24.62 0.17 -3.88 16 24 C 0.08 1.11 11.55 84.78 0.98 2.09 16 25 N -0.28 -5.06 11.54 -57.86 -0.67 -5.73 16 26 N -0.29 -4.99 12.51 37.02 0.46 -4.53 16 27 S 0.50 5.12 23.05 -56.49 -1.30 3.82 16 28 C -0.15 -2.25 7.44 31.18 0.23 -2.01 16 29 H 0.26 13.81 6.78 -92.71 -0.63 13.18 16 30 H 0.38 17.57 6.73 -92.71 -0.62 16.94 16 31 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.34 10.49 8.43 -89.70 -0.76 9.73 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.04 0.67 7.88 -2.39 -0.02 0.65 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 0.72 8.10 -2.39 -0.02 0.70 16 38 H 0.41 2.83 8.13 -92.71 -0.75 2.07 16 39 H 0.23 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.10 1.36 7.92 -2.39 -0.02 1.34 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.56 370.32 -1.87 -79.43 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.88 Total: 30.59 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.41 Total: 6.98 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -7.04 Total: -124.29 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.12 Total: -46.69 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.17 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -1.30 Total: 3.82 kcal Total: -77.56 -1.87 -79.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276939564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.781 kcal (2) G-P(sol) polarization free energy of solvation -77.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds