Wall clock time and date at job start Tue Mar 31 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48499 * 109.47271 * 269.99993 * 3 2 1 5 5 H 1.48502 * 109.47069 * 30.00076 * 3 2 1 6 6 H 1.48499 * 109.47466 * 149.99935 * 3 2 1 7 7 C 1.38802 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99919 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00049 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47208 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99671 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99817 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99555 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47028 * 174.95516 * 14 13 11 16 16 N 1.46893 * 115.54895 * 325.03389 * 15 14 13 17 17 C 1.46908 * 111.00221 * 279.36424 * 16 15 14 18 18 C 1.50696 * 109.47152 * 174.96104 * 17 16 15 19 19 C 1.38227 * 119.59091 * 95.00447 * 18 17 16 20 20 C 1.38591 * 119.19262 * 179.97438 * 19 18 17 21 21 C 1.38881 * 118.39597 * 0.25026 * 20 19 18 22 22 F 1.35098 * 120.44146 * 179.74629 * 21 20 19 23 23 C 1.38422 * 119.11326 * 359.52798 * 21 20 19 24 24 N 1.31846 * 119.58778 * 275.02002 * 18 17 16 25 25 C 1.52999 * 117.51971 * 110.73612 * 15 14 13 26 26 C 1.53003 * 60.00133 * 107.47939 * 25 15 14 27 27 H 0.96997 * 119.99877 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47183 * 59.99899 * 10 9 7 29 29 H 1.08999 * 109.47383 * 299.99980 * 10 9 7 30 30 H 0.97002 * 120.00175 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47788 * 54.95546 * 14 13 11 32 32 H 1.09001 * 109.47341 * 294.94866 * 14 13 11 33 33 H 1.00904 * 111.00234 * 155.41584 * 16 15 14 34 34 H 1.09003 * 109.46672 * 54.95957 * 17 16 15 35 35 H 1.08998 * 109.46913 * 294.96569 * 17 16 15 36 36 H 1.08003 * 120.40201 * 0.02562 * 19 18 17 37 37 H 1.08004 * 120.80347 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.63930 * 180.21106 * 23 21 20 39 39 H 1.09000 * 117.50053 * 214.97238 * 25 15 14 40 40 H 1.08999 * 117.49786 * 359.97438 * 25 15 14 41 41 H 1.09002 * 117.49518 * 252.50973 * 26 25 15 42 42 H 1.08993 * 117.51573 * 107.47959 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7281 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3028 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8443 -6.3431 -0.0033 14 6 2.3305 -7.7150 -0.0034 15 6 3.4972 -8.6965 -0.1321 16 7 4.6137 -8.2466 -0.9741 17 6 4.3162 -8.4536 -2.3978 18 6 5.4263 -7.8695 -3.2330 19 6 6.4555 -8.6841 -3.6664 20 6 7.4718 -8.1384 -4.4345 21 6 7.4175 -6.7837 -4.7356 22 9 8.3890 -6.2078 -5.4771 23 6 6.3523 -6.0324 -4.2698 24 7 5.4038 -6.5877 -3.5410 25 6 3.8340 -9.5581 1.0865 26 6 3.1665 -10.1904 -0.1364 27 1 -0.4850 0.8400 0.0004 28 1 3.1252 -3.7317 0.8874 29 1 3.1238 -3.7310 -0.8925 30 1 3.8011 -6.1834 -0.0043 31 1 1.6495 -7.8480 -0.8440 32 1 1.7982 -7.9038 0.9288 33 1 5.4722 -8.7082 -0.7133 34 1 3.3761 -7.9619 -2.6477 35 1 4.2327 -9.5214 -2.5999 36 1 6.4670 -9.7332 -3.4102 37 1 8.2888 -8.7508 -4.7866 38 1 6.2997 -4.9790 -4.5019 39 1 4.8840 -9.7910 1.2636 40 1 3.2247 -9.4255 1.9805 41 1 2.1179 -10.4740 -0.0470 42 1 3.7772 -10.8392 -0.7642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277007287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:30 Heat of formation + Delta-G solvation = -40.881040 kcal Electronic energy + Delta-G solvation = -25812.081512 eV Core-core repulsion = 21832.691557 eV Total energy + Delta-G solvation = -3979.389955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.01675 -41.25351 -40.65955 -39.39228 -35.23371 -34.79364 -34.57104 -33.49700 -31.39283 -31.20502 -27.83639 -27.23229 -26.68425 -24.91207 -23.56539 -22.71567 -21.60251 -20.85988 -19.72586 -18.69139 -18.33013 -17.78780 -17.66188 -17.35754 -16.87257 -16.83935 -16.60164 -16.21571 -16.14853 -15.54971 -15.24336 -15.01131 -14.88490 -14.59017 -14.51167 -14.29455 -14.20449 -14.11039 -13.63366 -13.38098 -13.28501 -13.15226 -12.88211 -12.61451 -12.52118 -12.33992 -11.83132 -11.69168 -11.13408 -11.07501 -10.94245 -10.88793 -10.52976 -10.26748 -9.97765 -9.92666 -9.39746 -8.64754 -8.33546 -6.11225 -0.16589 0.11411 1.28327 1.42710 1.47599 1.58934 1.68425 2.25808 2.30067 2.50129 2.84219 2.95424 3.00142 3.10132 3.34081 3.36524 3.62059 3.73999 3.78172 3.83649 3.88731 3.95845 4.12835 4.31220 4.32309 4.45696 4.53554 4.61964 4.68162 4.71058 4.75870 4.80464 4.86218 4.88642 4.95392 5.04326 5.24132 5.42588 5.50473 5.59703 5.91194 6.21021 6.41075 6.64474 6.89632 7.07410 7.33695 8.75864 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.002986 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.366070 B = 9373.275266 C =12228.055621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.080 0.920 9 S -0.147 6.147 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.572 6.572 13 N -0.695 5.695 14 C 0.168 3.832 15 C 0.029 3.971 16 N -0.647 5.647 17 C 0.118 3.882 18 C 0.110 3.890 19 C -0.123 4.123 20 C -0.103 4.103 21 C 0.034 3.966 22 F -0.138 7.138 23 C 0.061 3.939 24 N -0.470 5.470 25 C -0.157 4.157 26 C -0.186 4.186 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.418 0.582 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.359 0.641 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.166 0.834 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.437 -26.588 -5.541 33.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.098 0.902 9 S 0.080 5.920 10 C -0.277 4.277 11 C 0.317 3.683 12 O -0.451 6.451 13 N -0.348 5.348 14 C 0.044 3.956 15 C -0.064 4.064 16 N -0.279 5.279 17 C -0.011 4.011 18 C -0.028 4.028 19 C -0.143 4.143 20 C -0.129 4.129 21 C 0.013 3.987 22 F -0.117 7.117 23 C -0.098 4.098 24 N -0.179 5.179 25 C -0.194 4.194 26 C -0.225 4.225 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.255 0.745 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.199 0.801 37 H 0.194 0.806 38 H 0.183 0.817 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.476 -25.652 -5.272 30.940 hybrid contribution 2.692 0.435 -0.672 2.808 sum 19.167 -25.218 -5.943 32.228 Atomic orbital electron populations 1.70186 1.07935 1.28592 1.48040 1.26127 0.95990 1.03263 0.93714 0.84954 0.78204 0.76002 0.78816 1.19307 1.20066 1.18268 1.23203 0.95275 0.92144 1.58873 0.90217 1.85474 1.10464 0.99034 1.97007 1.23321 1.03406 0.94853 1.06155 1.19996 0.86204 0.86693 0.75374 1.90666 1.17308 1.86149 1.50995 1.45537 1.10463 1.04517 1.74276 1.20748 0.94187 0.79598 1.01106 1.21541 0.93823 0.90365 1.00646 1.59786 1.04087 1.62684 1.01390 1.20695 0.94946 0.99263 0.86208 1.21484 0.96116 0.89027 0.96210 1.22241 0.92347 1.03010 0.96727 1.22001 1.00870 0.92613 0.97418 1.19021 0.88926 0.93738 0.97052 1.91513 1.60859 1.84940 1.74344 1.23069 0.89682 1.01609 0.95396 1.67570 1.25657 1.13874 1.10761 1.23430 1.03081 1.00586 0.92330 1.23614 1.03015 0.94223 1.01687 0.91970 0.87733 0.88110 0.74456 0.92884 0.91557 0.81983 0.91549 0.89848 0.80112 0.80629 0.81729 0.86521 0.88110 0.88211 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.37 13.22 21.65 0.29 -57.08 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 44.98 29.55 68.60 2.03 47.01 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.55 -32.58 9.50 67.96 0.65 -31.93 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.13 -5.50 6.16 71.24 0.44 -5.06 16 11 C 0.53 21.47 7.85 87.66 0.69 22.16 16 12 O -0.57 -28.01 15.86 -3.01 -0.05 -28.06 16 13 N -0.69 -20.07 5.40 -463.06 -2.50 -22.57 16 14 C 0.17 3.95 5.74 86.38 0.50 4.45 16 15 C 0.03 0.40 2.13 3.53 0.01 0.41 16 16 N -0.65 -8.36 5.58 -474.13 -2.65 -11.00 16 17 C 0.12 1.61 5.78 85.55 0.49 2.10 16 18 C 0.11 1.74 6.34 42.55 0.27 2.01 16 19 C -0.12 -1.12 9.72 22.35 0.22 -0.90 16 20 C -0.10 -1.09 10.16 22.51 0.23 -0.86 16 21 C 0.03 0.58 7.35 22.47 0.17 0.74 16 22 F -0.14 -2.54 17.28 44.97 0.78 -1.76 16 23 C 0.06 1.25 11.17 84.73 0.95 2.20 16 24 N -0.47 -10.69 10.27 -183.72 -1.89 -12.58 16 25 C -0.16 -1.51 9.87 30.59 0.30 -1.21 16 26 C -0.19 -1.65 9.66 30.60 0.30 -1.35 16 27 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 29 H 0.10 4.17 8.14 -2.40 -0.02 4.15 16 30 H 0.42 10.60 7.75 -92.71 -0.72 9.88 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.61 7.91 -2.39 -0.02 1.59 16 33 H 0.36 2.96 8.54 -89.69 -0.77 2.19 16 34 H 0.07 1.36 8.01 -2.39 -0.02 1.34 16 35 H 0.08 0.61 7.52 -2.39 -0.02 0.59 16 36 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 37 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 38 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.12 0.71 8.07 -2.39 -0.02 0.69 16 40 H 0.10 1.11 8.05 -2.39 -0.02 1.09 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.12 0.57 7.86 -2.39 -0.02 0.55 16 Total: -1.00 -82.13 382.54 0.09 -82.04 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.42 Total: 19.71 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.66 Total: -5.99 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -6.75 Total: -103.23 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.05 Total: -28.06 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -82.13 0.09 -82.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277007287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.162 kcal (2) G-P(sol) polarization free energy of solvation -82.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds