Wall clock time and date at job start Tue Mar 31 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.32938 * 2 1 4 4 C 1.54908 * 110.37266 * 237.76124 * 2 1 3 5 5 C 1.55150 * 101.58490 * 204.15607 * 4 2 1 6 6 H 1.09003 * 110.71819 * 277.13554 * 5 4 2 7 7 N 1.46501 * 110.72081 * 153.86466 * 5 4 2 8 8 C 1.34774 * 119.99943 * 154.99822 * 7 5 4 9 9 O 1.21289 * 120.00161 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00067 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.47226 * 179.97438 * 10 8 7 12 12 C 1.76203 * 100.00058 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.38795 * 120.00122 * 180.02562 * 12 11 10 15 15 N 1.31629 * 120.00276 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00205 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46865 * 59.99594 * 16 14 12 18 18 H 1.48497 * 109.47704 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47184 * 300.00221 * 16 14 12 20 20 C 1.54324 * 102.94580 * 35.49594 * 5 4 2 21 21 N 1.47020 * 107.26966 * 337.81096 * 20 5 4 22 22 C 1.34780 * 125.64565 * 178.97359 * 21 20 5 23 23 O 1.21555 * 119.99789 * 179.97438 * 22 21 20 24 24 C 1.47866 * 120.00067 * 359.96007 * 22 21 20 25 25 N 1.34551 * 126.04889 * 359.68533 * 24 22 21 26 26 C 1.30863 * 107.26977 * 179.89582 * 25 24 22 27 27 N 1.34593 * 107.62504 * 0.36636 * 26 25 24 28 28 H 0.97004 * 125.74758 * 179.79892 * 27 26 25 29 29 N 1.28843 * 108.50106 * 359.77090 * 27 26 25 30 30 H 1.09002 * 109.47153 * 182.23844 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.24034 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.24016 * 1 2 3 33 33 H 1.09006 * 110.99972 * 322.22487 * 4 2 1 34 34 H 1.08999 * 111.00546 * 86.07017 * 4 2 1 35 35 H 0.96998 * 120.00077 * 334.99673 * 7 5 4 36 36 H 1.08995 * 109.47152 * 299.99757 * 10 8 7 37 37 H 1.08999 * 109.47087 * 59.99682 * 10 8 7 38 38 H 0.96998 * 120.00596 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.87905 * 97.22990 * 20 5 4 40 40 H 1.08996 * 109.88065 * 218.23781 * 20 5 4 41 41 H 1.07997 * 126.19324 * 180.13226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2283 5 6 3.4778 -1.1990 -0.7352 6 1 4.1945 -0.3893 -0.8724 7 7 3.9250 -2.4115 -1.4253 8 6 5.2420 -2.6706 -1.5470 9 8 6.0569 -1.8999 -1.0856 10 6 5.7021 -3.9181 -2.2563 11 16 7.5110 -3.9805 -2.2552 12 6 7.7655 -5.4931 -3.1223 13 1 6.9182 -6.0657 -3.4695 14 6 9.0549 -5.9493 -3.3583 15 7 10.0877 -5.2517 -2.9348 16 14 9.3248 -7.5532 -4.2770 17 1 8.7255 -7.4543 -5.6322 18 1 10.7814 -7.8152 -4.3984 19 1 8.6818 -8.6649 -3.5315 20 6 3.2494 -1.4775 0.7654 21 7 2.0431 -0.7395 1.1676 22 6 1.4972 -0.7386 2.3999 23 8 0.4942 -0.0881 2.6198 24 6 2.1182 -1.5293 3.4842 25 7 3.2199 -2.2940 3.3754 26 6 3.4437 -2.8225 4.5515 27 7 2.4770 -2.3911 5.3827 28 1 2.3893 -2.6254 6.3200 29 7 1.6881 -1.6141 4.7240 30 1 -0.3633 -1.0269 0.0401 31 1 -0.3633 0.4787 -0.9094 32 1 -0.3634 0.5482 0.8692 33 1 1.4512 -1.6467 -1.4424 34 1 2.1399 -0.1243 -2.1002 35 1 3.2733 -3.0278 -1.7945 36 1 5.3076 -4.7947 -1.7424 37 1 5.3399 -3.9061 -3.2843 38 1 10.9889 -5.5706 -3.0994 39 1 3.1014 -2.5455 0.9259 40 1 4.1076 -1.1317 1.3414 41 1 4.2549 -3.4878 4.8078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281174170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:44 Heat of formation + Delta-G solvation = 30.122681 kcal Electronic energy + Delta-G solvation = -26436.021118 eV Core-core repulsion = 22479.630077 eV Total energy + Delta-G solvation = -3956.391041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.78887 -40.52624 -39.12005 -37.48070 -34.24168 -33.96291 -32.43558 -32.15672 -31.45898 -30.70255 -28.44431 -26.10544 -25.50775 -25.14743 -23.24622 -22.47197 -21.29048 -20.44657 -19.73975 -18.73956 -17.87314 -17.15621 -16.89721 -16.61047 -16.28042 -16.14005 -15.43179 -14.86504 -14.83225 -14.80582 -14.20186 -13.97992 -13.75617 -13.64946 -13.18498 -12.80890 -12.64732 -12.49328 -12.47734 -12.28164 -12.04119 -11.59691 -11.43583 -11.10573 -11.05158 -11.04627 -10.98430 -10.77282 -10.73992 -10.17824 -10.07944 -9.83133 -9.43590 -9.07529 -8.99611 -8.83126 -8.24646 -6.50436 -6.22266 -3.92756 1.05745 1.79015 2.10232 2.65160 3.01009 3.05029 3.10861 3.22738 3.26835 3.29846 3.61514 3.78863 4.14832 4.19920 4.34523 4.38420 4.51808 4.70660 4.96064 5.03838 5.11904 5.12885 5.19854 5.40138 5.51190 5.56802 5.59894 5.61387 5.82795 5.85164 5.87609 5.90428 5.95506 6.01357 6.13653 6.27324 6.35934 6.58125 7.15309 7.56703 7.58600 7.66269 7.91818 8.34314 8.57796 9.23033 10.85048 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002464 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.219841 B =11358.737298 C =12684.087926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.085 0.915 4 C -0.137 4.137 5 C 0.135 3.865 6 H 0.108 0.892 7 N -0.728 5.728 8 C 0.534 3.466 9 O -0.513 6.513 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.099 3.901 21 N -0.596 5.596 22 C 0.633 3.367 23 O -0.518 6.518 24 C 0.148 3.852 25 N -0.476 5.476 26 C 0.201 3.799 27 N -0.401 5.401 28 H 0.452 0.548 29 N -0.251 5.251 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.269 0.731 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 5.978 11.974 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.103 0.897 4 C -0.175 4.175 5 C 0.028 3.972 6 H 0.126 0.874 7 N -0.382 5.382 8 C 0.321 3.679 9 O -0.387 6.387 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.025 4.025 21 N -0.330 5.330 22 C 0.417 3.583 23 O -0.392 6.392 24 C -0.133 4.133 25 N -0.202 5.202 26 C -0.097 4.097 27 N -0.124 5.124 28 H 0.299 0.701 29 N -0.091 5.091 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -18.022 7.977 12.701 23.446 hybrid contribution -0.708 -2.785 -0.450 2.909 sum -18.730 5.192 12.251 22.975 Atomic orbital electron populations 1.22162 0.93350 1.03047 1.03557 1.21953 0.95584 0.95702 0.83095 0.89716 1.23207 0.95460 1.01320 0.97555 1.21881 0.95877 0.89069 0.90341 0.87406 1.45932 1.07639 1.24809 1.59848 1.20349 0.81510 0.87181 0.78881 1.90714 1.52639 1.48358 1.46946 1.23531 1.07189 0.97211 1.02489 1.85395 0.91782 1.31043 1.74974 1.22829 0.95101 1.08317 1.42192 0.90987 1.24981 0.94960 0.97954 0.95642 1.70002 0.98646 1.37944 1.43715 0.86237 0.77321 0.82110 0.79903 1.19948 1.20832 1.19954 1.22619 0.86890 0.97757 0.95277 1.48124 1.28474 1.48140 1.08306 1.15782 0.82639 0.80206 0.79672 1.90785 1.24261 1.42852 1.81259 1.23706 0.94743 1.02502 0.92313 1.71517 1.14905 1.11405 1.22339 1.26774 0.96183 1.00927 0.85793 1.45298 1.19449 1.33408 1.14271 0.70085 1.74334 1.17311 1.11197 1.06283 0.92484 0.91634 0.89608 0.89735 0.88749 0.76534 0.89158 0.89177 0.92130 0.89864 0.89693 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.59 37.16 0.32 -1.16 16 2 C 0.14 1.29 3.77 -66.42 -0.25 1.04 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.14 -1.08 6.13 -24.59 -0.15 -1.23 16 5 C 0.14 1.48 3.32 -66.10 -0.22 1.26 16 6 H 0.11 1.35 7.55 -51.93 -0.39 0.95 16 7 N -0.73 -8.83 5.10 -52.03 -0.27 -9.09 16 8 C 0.53 9.30 7.85 -10.99 -0.09 9.21 16 9 O -0.51 -10.98 15.51 5.55 0.09 -10.89 16 10 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 11 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 12 C -0.54 -14.96 9.50 30.94 0.29 -14.66 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 16 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 C 0.10 1.16 5.28 -3.07 -0.02 1.15 16 21 N -0.60 -6.89 3.24 -164.14 -0.53 -7.42 16 22 C 0.63 8.59 7.64 -12.32 -0.09 8.49 16 23 O -0.52 -8.02 14.80 5.32 0.08 -7.94 16 24 C 0.15 1.88 7.80 -156.35 -1.22 0.66 16 25 N -0.48 -5.39 8.86 -12.36 -0.11 -5.50 16 26 C 0.20 1.40 13.14 -90.48 -1.19 0.21 16 27 N -0.40 -2.61 6.93 29.56 0.20 -2.41 16 28 H 0.45 0.89 8.96 -190.21 -1.71 -0.82 16 29 N -0.25 -2.86 12.30 32.07 0.39 -2.47 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.96 6.09 -51.93 -0.32 0.65 16 33 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.40 3.72 8.56 -40.82 -0.35 3.37 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.08 1.04 7.51 -51.93 -0.39 0.65 16 40 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 41 H 0.23 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -38.65 363.46 -10.12 -48.77 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.47 Total: 0.00 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.49 Total: 4.24 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.43 Total: -51.93 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.16 Total: -18.83 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.65 -10.12 -48.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.897 kcal (2) G-P(sol) polarization free energy of solvation -38.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds