Wall clock time and date at job start Tue Mar 31 2020 23:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.32938 * 2 1 4 4 C 1.54908 * 110.37266 * 237.76124 * 2 1 3 5 5 C 1.55150 * 101.58490 * 204.15607 * 4 2 1 6 6 H 1.09003 * 110.71819 * 277.13554 * 5 4 2 7 7 N 1.46501 * 110.72081 * 153.86466 * 5 4 2 8 8 C 1.34774 * 119.99943 * 154.99822 * 7 5 4 9 9 O 1.21289 * 120.00161 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00067 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.47226 * 179.97438 * 10 8 7 12 12 C 1.76203 * 100.00058 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00022 * 359.97438 * 12 11 10 14 14 C 1.38795 * 120.00122 * 180.02562 * 12 11 10 15 15 N 1.31629 * 120.00276 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00205 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46865 * 59.99594 * 16 14 12 18 18 H 1.48497 * 109.47704 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47184 * 300.00221 * 16 14 12 20 20 C 1.54324 * 102.94580 * 35.49594 * 5 4 2 21 21 N 1.47020 * 107.26966 * 337.81096 * 20 5 4 22 22 C 1.34780 * 125.64565 * 178.97359 * 21 20 5 23 23 O 1.21555 * 119.99789 * 179.97438 * 22 21 20 24 24 C 1.47866 * 120.00067 * 359.96007 * 22 21 20 25 25 N 1.34551 * 126.04889 * 359.68533 * 24 22 21 26 26 C 1.30863 * 107.26977 * 179.89582 * 25 24 22 27 27 N 1.34593 * 107.62504 * 0.36636 * 26 25 24 28 28 H 0.97004 * 125.74758 * 179.79892 * 27 26 25 29 29 N 1.28843 * 108.50106 * 359.77090 * 27 26 25 30 30 H 1.09002 * 109.47153 * 182.23844 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.24034 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.24016 * 1 2 3 33 33 H 1.09006 * 110.99972 * 322.22487 * 4 2 1 34 34 H 1.08999 * 111.00546 * 86.07017 * 4 2 1 35 35 H 0.96998 * 120.00077 * 334.99673 * 7 5 4 36 36 H 1.08995 * 109.47152 * 299.99757 * 10 8 7 37 37 H 1.08999 * 109.47087 * 59.99682 * 10 8 7 38 38 H 0.96998 * 120.00596 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.87905 * 97.22990 * 20 5 4 40 40 H 1.08996 * 109.88065 * 218.23781 * 20 5 4 41 41 H 1.07997 * 126.19324 * 180.13226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2283 5 6 3.4778 -1.1990 -0.7352 6 1 4.1945 -0.3893 -0.8724 7 7 3.9250 -2.4115 -1.4253 8 6 5.2420 -2.6706 -1.5470 9 8 6.0569 -1.8999 -1.0856 10 6 5.7021 -3.9181 -2.2563 11 16 7.5110 -3.9805 -2.2552 12 6 7.7655 -5.4931 -3.1223 13 1 6.9182 -6.0657 -3.4695 14 6 9.0549 -5.9493 -3.3583 15 7 10.0877 -5.2517 -2.9348 16 14 9.3248 -7.5532 -4.2770 17 1 8.7255 -7.4543 -5.6322 18 1 10.7814 -7.8152 -4.3984 19 1 8.6818 -8.6649 -3.5315 20 6 3.2494 -1.4775 0.7654 21 7 2.0431 -0.7395 1.1676 22 6 1.4972 -0.7386 2.3999 23 8 0.4942 -0.0881 2.6198 24 6 2.1182 -1.5293 3.4842 25 7 3.2199 -2.2940 3.3754 26 6 3.4437 -2.8225 4.5515 27 7 2.4770 -2.3911 5.3827 28 1 2.3893 -2.6254 6.3200 29 7 1.6881 -1.6141 4.7240 30 1 -0.3633 -1.0269 0.0401 31 1 -0.3633 0.4787 -0.9094 32 1 -0.3634 0.5482 0.8692 33 1 1.4512 -1.6467 -1.4424 34 1 2.1399 -0.1243 -2.1002 35 1 3.2733 -3.0278 -1.7945 36 1 5.3076 -4.7947 -1.7424 37 1 5.3399 -3.9061 -3.2843 38 1 10.9889 -5.5706 -3.0994 39 1 3.1014 -2.5455 0.9259 40 1 4.1076 -1.1317 1.3414 41 1 4.2549 -3.4878 4.8078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281174170.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:43 Heat of formation + Delta-G solvation = 1.429275 kcal Electronic energy + Delta-G solvation = -26437.265357 eV Core-core repulsion = 22479.630077 eV Total energy + Delta-G solvation = -3957.635280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.50314 -41.49647 -40.38878 -38.54082 -35.37686 -34.75254 -34.54016 -32.96191 -32.20626 -31.91488 -29.72815 -27.61224 -26.94056 -26.01159 -23.90655 -23.44986 -22.12411 -21.68320 -20.55290 -19.80486 -19.47547 -18.15265 -17.79345 -17.63237 -17.36684 -17.20961 -16.83714 -16.41232 -16.19277 -15.78117 -15.62989 -15.04466 -14.78238 -14.62044 -14.52730 -14.36247 -13.79055 -13.48643 -13.24065 -13.18376 -13.12442 -13.07374 -12.83776 -12.63724 -12.52202 -12.23020 -11.90747 -11.76260 -11.68832 -11.52840 -11.13137 -11.08996 -10.90074 -10.83555 -10.21633 -10.13942 -9.78664 -8.60588 -8.30509 -6.07436 0.22774 1.10075 1.28352 1.37985 1.46438 1.50864 1.60273 1.66146 2.02303 2.16899 2.29941 2.35172 2.94336 3.03583 3.34281 3.40861 3.53090 3.58042 3.94145 3.99413 4.03834 4.19620 4.23165 4.35350 4.38737 4.59047 4.66310 4.75335 4.81143 4.89709 4.94802 4.97967 5.15235 5.17433 5.23815 5.46043 5.47898 5.51452 5.90441 6.20818 6.23809 6.54413 6.76965 7.05141 7.11096 7.29478 8.78230 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002464 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.219841 B =11358.737298 C =12684.087926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.131 3.869 3 H 0.090 0.910 4 C -0.118 4.118 5 C 0.135 3.865 6 H 0.094 0.906 7 N -0.700 5.700 8 C 0.539 3.461 9 O -0.559 6.559 10 C -0.130 4.130 11 S -0.148 6.148 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.111 3.889 21 N -0.592 5.592 22 C 0.625 3.375 23 O -0.547 6.547 24 C 0.121 3.879 25 N -0.510 5.510 26 C 0.217 3.783 27 N -0.381 5.381 28 H 0.472 0.528 29 N -0.275 5.275 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.419 0.581 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.270 0.730 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 4.329 11.182 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.108 0.892 4 C -0.156 4.156 5 C 0.028 3.972 6 H 0.112 0.888 7 N -0.354 5.354 8 C 0.325 3.675 9 O -0.437 6.437 10 C -0.281 4.281 11 S 0.079 5.921 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.014 4.014 21 N -0.326 5.326 22 C 0.410 3.590 23 O -0.423 6.423 24 C -0.158 4.158 25 N -0.237 5.237 26 C -0.080 4.080 27 N -0.106 5.106 28 H 0.323 0.677 29 N -0.117 5.117 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.257 0.743 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -19.576 6.311 11.920 23.772 hybrid contribution -0.319 -2.240 -0.075 2.264 sum -19.894 4.072 11.845 23.509 Atomic orbital electron populations 1.22065 0.92855 1.02596 1.03729 1.22202 0.95995 0.96087 0.82791 0.89219 1.23189 0.92850 1.02156 0.97434 1.21913 0.97432 0.87878 0.89928 0.88811 1.45603 1.06038 1.25293 1.58494 1.20051 0.82802 0.86166 0.78459 1.90711 1.54287 1.49600 1.49054 1.23372 1.01215 0.99073 1.04448 1.85571 0.99425 1.31713 1.75422 1.23182 0.95788 1.08400 1.41993 0.89907 1.26086 0.94596 1.01918 0.96481 1.70171 0.99172 1.40118 1.45323 0.85045 0.77321 0.77173 0.78714 1.18743 1.20586 1.18665 1.22391 0.86254 0.97320 0.95405 1.48177 1.28093 1.47854 1.08450 1.16062 0.82477 0.80107 0.80378 1.90758 1.25512 1.44218 1.81861 1.23625 0.95818 1.03767 0.92617 1.71472 1.15034 1.12427 1.24765 1.27589 0.96221 0.99714 0.84491 1.45266 1.18390 1.31893 1.15056 0.67692 1.74234 1.18702 1.12411 1.06310 0.92960 0.88967 0.92088 0.87983 0.86316 0.74309 0.87186 0.87032 0.92066 0.90315 0.91913 0.70744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.59 71.98 0.62 -1.97 16 2 C 0.13 2.26 3.77 45.47 0.17 2.43 16 3 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.12 -1.52 6.13 31.98 0.20 -1.33 16 5 C 0.13 2.76 3.32 46.18 0.15 2.91 16 6 H 0.09 2.29 7.55 -2.39 -0.02 2.27 16 7 N -0.70 -15.44 5.10 -436.92 -2.23 -17.67 16 8 C 0.54 18.21 7.85 87.66 0.69 18.89 16 9 O -0.56 -24.23 15.51 -3.06 -0.05 -24.28 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.36 16 11 S -0.15 -7.95 20.57 -56.49 -1.16 -9.12 16 12 C -0.55 -30.31 9.50 67.95 0.65 -29.66 16 13 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 14 C 0.01 0.78 5.49 84.86 0.47 1.25 16 15 N -0.91 -55.04 13.22 21.65 0.29 -54.75 16 16 Si 1.00 42.61 29.55 68.60 2.03 44.64 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 C 0.11 2.58 5.28 86.73 0.46 3.03 16 21 N -0.59 -13.62 3.24 -791.50 -2.57 -16.19 16 22 C 0.62 17.42 7.64 86.79 0.66 18.08 16 23 O -0.55 -17.58 14.80 -3.89 -0.06 -17.64 16 24 C 0.12 3.14 7.80 137.13 1.07 4.21 16 25 N -0.51 -11.39 8.86 -193.03 -1.71 -13.10 16 26 C 0.22 2.66 13.14 180.30 2.37 5.03 16 27 N -0.38 -4.45 6.93 -60.38 -0.42 -4.87 16 28 H 0.47 0.97 8.96 -219.79 -1.97 -1.00 16 29 N -0.27 -6.24 12.30 -52.44 -0.65 -6.89 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.37 6.09 -2.38 -0.01 1.35 16 33 H 0.10 1.03 7.92 -2.38 -0.02 1.01 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.42 6.31 8.56 -92.71 -0.79 5.52 16 36 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.08 1.92 7.51 -2.39 -0.02 1.90 16 40 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 41 H 0.28 0.41 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -88.52 363.46 -0.25 -88.77 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -1.66 Total: 12.57 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.94 Total: 18.51 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -7.28 Total: -113.46 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.10 Total: -41.92 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.12 kcal Total: -88.52 -0.25 -88.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281174170.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.202 kcal (2) G-P(sol) polarization free energy of solvation -88.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds